MGE detailed information
MGE type: Prophage MGE length: 94835 bp
Accession: NZ_CP026878 Location: 1564097..1658931 Organism: Shigella dysenteriae strain 07-3308 Replicon: chromosome
Accession: NZ_CP026878 Location: 1564097..1658931 Organism: Shigella dysenteriae strain 07-3308 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P62_RS08665 () | 1560348..1561013 | - | 666 | WP_000847882.1 | UPF0149 family protein YecA | - |
| C1P62_RS08685 () | 1561663..1562211 | - | 549 | WP_001160187.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| C1P62_RS08690 () | 1562268..1564100 | - | 1833 | WP_001283422.1 | excinuclease ABC subunit UvrC | - |
| C1P62_RS08695 () | 1564097..1564753 | - | 657 | WP_000611328.1 | Response regulator UvrY | VF |
| C1P62_RS08700 () | 1565049..1565225 | + | 177 | WP_000590344.1 | hypothetical protein | - |
| C1P62_RS08705 () | 1565212..1565436 | + | 225 | WP_000106474.1 | DUF2594 family protein | - |
| C1P62_RS08710 () | 1565504..1565677 | - | 174 | Protein_1659 | transcriptional regulator SdiA | - |
| C1P62_RS08720 () | 1566446..1567000 | - | 555 | Protein_1661 | transcriptional regulator SdiA | - |
| C1P62_RS08725 () | 1567230..1567982 | - | 753 | WP_001272979.1 | Arginine transport ATP-binding protein ArtM | VF |
| C1P62_RS08730 () | 1567979..1568647 | - | 669 | WP_001158223.1 | cystine ABC transporter permease | - |
| C1P62_RS08735 () | 1568662..1569648 | - | 987 | WP_001128217.1 | D-cysteine desulfhydrase | - |
| C1P62_RS08740 () | 1569753..1570553 | - | 801 | WP_024259540.1 | L-cystine-binding protein FliY | VF |
| C1P62_RS08745 () | 1570641..1571192 | - | 552 | WP_001362553.1 | Regulator of sigma S factor FliZ | VF |
| C1P62_RS08750 () | 1571238..1571957 | - | 720 | WP_001087458.1 | RNA polymerase sigma factor FliA | VF |
| C1P62_RS08755 () | 1572275..1572604 | - | 330 | Protein_1668 | Flagellin | VF |
| C1P62_RS08760 () | 1572664..1573361 | + | 698 | Protein_1669 | IS1 family transposase | - |
| C1P62_RS08765 () | 1573379..1574716 | - | 1338 | Protein_1670 | flagellin FliC | - |
| C1P62_RS08770 () | 1574982..1576379 | + | 1398 | WP_000146756.1 | Flagellar hook-associated protein 2 | VF |
| C1P62_RS08775 () | 1576404..1576814 | + | 411 | WP_000270670.1 | Flagellar secretion chaperone FliS | VF |
| C1P62_RS08780 () | 1576814..1577179 | + | 366 | Protein_1673 | Flagellar protein FliT | VF |
| C1P62_RS08785 () | 1577257..1578744 | + | 1488 | WP_001245709.1 | alpha-amylase | - |
| C1P62_RS08790 () | 1578778..1579191 | - | 414 | WP_001295642.1 | lipoprotein | - |
| C1P62_RS08795 () | 1579378..1580583 | + | 1206 | WP_000118917.1 | selenium metabolism membrane protein YedE/FdhT | - |
| C1P62_RS08800 () | 1580580..1580813 | + | 234 | WP_000790504.1 | sulfurtransferase-like selenium metabolism protein YedF | - |
| C1P62_RS08805 () | 1580922..1581593 | + | 672 | WP_000334642.1 | SOS response-associated peptidase | - |
| C1P62_RS08810 () | 1581718..1582412 | + | 695 | WP_087786203.1 | IS1 family transposase IS1N | Transposase |
| C1P62_RS08820 () | 1582557..1583251 | + | 695 | WP_134801736.1 | IS1 family transposase IS1N | Transposase |
| C1P62_RS08825 () | 1583266..1584221 | + | 956 | Protein_1681 | late control protein | - |
| C1P62_RS08830 () | 1584227..1584352 | + | 126 | Protein_1682 | prophage tail fiber N-terminal domain-containing protein | - |
| C1P62_RS08835 () | 1584445..1585673 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| C1P62_RS08840 () | 1585686..1587894 | - | 2209 | Protein_1684 | inverse autotransporter beta domain-containing protein | - |
| C1P62_RS08850 () | 1588383..1589180 | - | 798 | WP_005023745.1 | DgsA anti-repressor MtfA | - |
| C1P62_RS08860 () | 1589372..1589479 | - | 108 | Protein_1686 | integrase | - |
| C1P62_RS08865 () | 1589536..1590230 | + | 695 | WP_134801557.1 | IS1 family transposase IS1N | Transposase |
| C1P62_RS08870 () | 1590227..1590448 | - | 222 | Protein_1688 | integrase | - |
| C1P62_RS08880 () | 1591681..1591794 | + | 114 | WP_000111993.1 | tail protein | - |
| C1P62_RS08885 () | 1591797..1592342 | + | 546 | WP_134806257.1 | tail fiber assembly protein | - |
| C1P62_RS08890 () | 1592366..1593399 | + | 1034 | Protein_1692 | prophage tail fiber N-terminal domain-containing protein | - |
| C1P62_RS08895 () | 1593392..1593547 | + | 156 | Protein_1693 | DUF4376 domain-containing protein | - |
| C1P62_RS25610 () | 1593547..1593726 | + | 180 | WP_001039884.1 | hypothetical protein | - |
| C1P62_RS25615 () | 1593727..1593903 | - | 177 | WP_000114005.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| C1P62_RS08905 () | 1593942..1595170 | + | 1229 | WP_134801774.1 | IS3 family transposase ISSd1 | Transposase |
| C1P62_RS08910 () | 1595143..1596634 | - | 1492 | Protein_1697 | E3 ubiquitin-protein ligase ipaH3 | VF |
| C1P62_RS08915 () | 1596666..1597093 | - | 428 | Protein_1698 | IS1 family transposase IS1N | Transposase |
| C1P62_RS08925 () | 1598444..1598695 | - | 252 | Protein_1700 | IS1 family transposase IS1N | Transposase |
| C1P62_RS08930 () | 1599059..1599727 | - | 669 | WP_000239883.1 | class I SAM-dependent methyltransferase | - |
| C1P62_RS08935 () | 1599784..1600053 | + | 270 | Protein_1702 | tail fiber assembly protein | - |
| C1P62_RS08945 () | 1600547..1601272 | - | 726 | WP_011378644.1 | hypothetical protein ; Integrase | Integrase |
| C1P62_RS25320 () | 1601187..1601564 | - | 378 | WP_023600695.1 | hypothetical protein | - |
| C1P62_RS08955 () | 1601641..1602334 | + | 694 | Protein_1705 | IS1 family transposase | - |
| C1P62_RS08960 () | 1602349..1602621 | - | 273 | Protein_1706 | leucine-rich repeat domain-containing protein | - |
| C1P62_RS08965 () | 1602668..1603365 | + | 698 | Protein_1707 | IS1 family transposase | - |
| C1P62_RS08975 () | 1604194..1604430 | + | 237 | Protein_1709 | Transcriptional regulatory protein RcsA | VF |
| C1P62_RS08980 () | 1604474..1604662 | - | 189 | WP_000867217.1 | protein DsrB | - |
| C1P62_RS08985 () | 1604811..1605038 | + | 228 | WP_000844800.1 | peroxide/acid resistance protein YodD | - |
| C1P62_RS08990 () | 1605336..1606151 | + | 816 | WP_000491523.1 | mannosyl-3-phosphoglycerate phosphatase-related protein | - |
| C1P62_RS08995 () | 1606148..1607824 | - | 1677 | WP_000431441.1 | cellulose biosynthesis regulator YedQ | - |
| C1P62_RS09000 () | 1608013..1608195 | - | 183 | WP_000009307.1 | DUF2158 domain-containing protein | - |
| C1P62_RS09005 () | 1608274..1609191 | - | 918 | WP_000922683.1 | DUF808 domain-containing protein | - |
| C1P62_RS09010 () | 1609364..1610284 | + | 921 | WP_001212213.1 | drug/metabolite exporter YedA | - |
| C1P62_RS09015 () | 1610273..1610743 | - | 471 | WP_000785996.1 | VSPR family DNA mismatch endonuclease | - |
| C1P62_RS09020 () | 1610724..1612142 | - | 1419 | WP_001157258.1 | DNA-cytosine methyltransferase | - |
| C1P62_RS09025 () | 1612209..1612893 | - | 685 | Protein_1719 | phosphohydrolase | - |
| C1P62_RS09030 () | 1612933..1613298 | - | 366 | WP_078164536.1 | permease | - |
| C1P62_RS25620 () | 1613313..1613459 | - | 147 | WP_171764078.1 | hypothetical protein | - |
| C1P62_RS09040 () | 1613439..1614133 | + | 695 | WP_134801557.1 | IS1 family transposase IS1N | Transposase |
| C1P62_RS09045 () | 1614108..1614758 | - | 651 | WP_005020386.1 | putative transcriptional regulatory protein YedW | VF |
| C1P62_RS09050 () | 1614891..1615199 | + | 309 | Protein_1724 | hydroxyisourate hydrolase | - |
| C1P62_RS09055 () | 1615257..1615951 | + | 695 | WP_134801777.1 | IS1 family transposase IS1N | Transposase |
| C1P62_RS09060 () | 1615956..1616078 | + | 123 | Protein_1726 | hydroxyisourate hydrolase | - |
| C1P62_RS09065 () | 1616177..1617181 | + | 1005 | WP_000740096.1 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| C1P62_RS09070 () | 1617182..1617817 | + | 636 | WP_001240091.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| C1P62_RS09075 () | 1618074..1618724 | + | 651 | WP_001007762.1 | metal-binding protein ZinT | - |
| C1P62_RS09085 () | 1619076..1619769 | + | 694 | Protein_1730 | IS1 family transposase | - |
| C1P62_RS09090 () | 1620402..1621570 | + | 1169 | WP_134801779.1 | IS3 family transposase ISLad1 | Transposase |
| C1P62_RS09105 () | 1622330..1623445 | + | 1116 | WP_005020367.1 | Elloramycin glycosyltransferase ElmGT | VF |
| C1P62_RS09110 () | 1623585..1627244 | + | 3660 | WP_011378643.1 | Multidrug efflux ATP-binding/permease protein | VF |
| C1P62_RS09115 () | 1627348..1628576 | + | 1229 | Protein_1734 | Enterochelin esterase | VF |
| C1P62_RS09120 () | 1628661..1629617 | + | 957 | WP_000271275.1 | Ferri-bacillibactin esterase BesA | VF |
| C1P62_RS09125 () | 1629662..1631838 | - | 2177 | Protein_1736 | Ferrienterobactin receptor | VF |
| C1P62_RS09135 () | 1631932..1632625 | + | 694 | Protein_1737 | IS1 family transposase | - |
| C1P62_RS09140 () | 1633337..1634565 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| C1P62_RS09145 () | 1634576..1635684 | - | 1109 | Protein_1739 | IS3 family transposase ISSd1 | Transposase |
| C1P62_RS09150 () | 1635782..1636045 | + | 264 | WP_078164616.1 | phospholipase | - |
| C1P62_RS09155 () | 1636178..1636645 | + | 468 | WP_000668907.1 | hypothetical protein | - |
| C1P62_RS09160 () | 1637076..1637559 | + | 484 | Protein_1742 | hypothetical protein | - |
| C1P62_RS09165 () | 1637679..1637852 | + | 174 | WP_000088742.1 | DUF905 family protein | - |
| C1P62_RS09175 () | 1637953..1638773 | + | 821 | Protein_1744 | DUF945 domain-containing protein | - |
| C1P62_RS09185 () | 1639053..1639526 | + | 474 | WP_001313575.1 | antirestriction protein | - |
| C1P62_RS09190 () | 1639542..1639994 | + | 453 | WP_134806258.1 | RadC family protein | - |
| C1P62_RS09195 () | 1640063..1640284 | + | 222 | WP_000692331.1 | DUF987 domain-containing protein | - |
| C1P62_RS09200 () | 1640303..1640947 | + | 645 | WP_000086764.1 | hypothetical protein | - |
| C1P62_RS09205 () | 1640997..1641374 | + | 378 | WP_001285603.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| C1P62_RS09210 () | 1641421..1641795 | + | 375 | WP_001094433.1 | toxin | Toxin Detail |
| C1P62_RS09215 () | 1641792..1642283 | + | 492 | WP_000976859.1 | hypothetical protein | - |
| C1P62_RS09220 () | 1642295..1642492 | + | 198 | WP_000839257.1 | DUF957 domain-containing protein | - |
| C1P62_RS09225 () | 1642589..1643431 | + | 843 | WP_005020348.1 | DUF4942 domain-containing protein | - |
| C1P62_RS09235 () | 1643902..1644840 | + | 939 | WP_000351336.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| C1P62_RS09240 () | 1644895..1645632 | + | 738 | WP_000283663.1 | zinc-binding phosphatase | - |
| C1P62_RS09245 () | 1645656..1646210 | + | 555 | WP_001001927.1 | molecular chaperone YcdY | - |
| C1P62_RS09250 () | 1646312..1646803 | + | 492 | WP_001300785.1 | DUF1097 domain-containing protein | - |
| C1P62_RS09255 () | 1646855..1647550 | - | 696 | Protein_1758 | IS1 family transposase IS1N | Transposase |
| C1P62_RS09265 () | 1647642..1648475 | - | 834 | WP_001189330.1 | Curli production assembly/transport component CsgG | VF |
| C1P62_RS09270 () | 1648502..1648918 | - | 417 | WP_001264087.1 | Curli production assembly/transport component CsgF | VF |
| C1P62_RS09275 () | 1648943..1649332 | - | 390 | WP_000833289.1 | Curli production assembly/transport component CsgE | VF |
| C1P62_RS09280 () | 1649337..1649732 | - | 396 | Protein_1762 | CsgBAC operon transcriptional regulatory protein | VF |
| C1P62_RS09285 () | 1649791..1650367 | + | 577 | Protein_1763 | IS1 family transposase | - |
| C1P62_RS09290 () | 1650384..1651081 | - | 698 | Protein_1764 | IS1 family transposase | - |
| C1P62_RS09295 () | 1651138..1651260 | + | 123 | Protein_1765 | IS1 family transposase | - |
| C1P62_RS09305 () | 1651560..1652889 | + | 1330 | Protein_1766 | hypothetical protein | - |
| C1P62_RS09310 () | 1653038..1654546 | - | 1509 | WP_001018473.1 | sodium/proline symporter PutP | - |
| C1P62_RS25325 () | 1654705..1654857 | - | 153 | WP_001004556.1 | hypothetical protein | - |
| C1P62_RS09320 () | 1654969..1658931 | + | 3963 | Protein_1769 | trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase | - |
| C1P62_RS09325 () | 1658971..1659609 | - | 639 | WP_005020332.1 | HTH-type transcriptional regulator RutR | - |
| C1P62_RS09330 () | 1659898..1660988 | + | 1091 | Protein_1771 | pyrimidine utilization protein A | - |
| C1P62_RS09335 () | 1660988..1661680 | + | 693 | Protein_1772 | peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB | - |
| C1P62_RS09340 () | 1661692..1662078 | + | 387 | WP_001126780.1 | pyrimidine utilization protein C | - |
| C1P62_RS09345 () | 1662086..1662757 | + | 672 | Protein_1774 | pyrimidine utilization protein D | - |
| C1P62_RS09350 () | 1662770..1663360 | + | 591 | WP_001001203.1 | malonic semialdehyde reductase | - |
| C1P62_RS09355 () | 1663371..1663865 | + | 495 | WP_001028095.1 | pyrimidine utilization flavin reductase protein F | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|