MGE detailed information
MGE type: Prophage MGE length: 44655 bp
Accession: NZ_CP026846 Location: 2295579..2340233 Organism: Shigella boydii strain 59-2708 Replicon: chromosome
Accession: NZ_CP026846 Location: 2295579..2340233 Organism: Shigella boydii strain 59-2708 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P57_RS11455 () | 2292504..2293166 | - | 663 | WP_000944257.1 | exodeoxyribonuclease X | - |
| C1P57_RS11460 () | 2293190..2293846 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| C1P57_RS11465 () | 2293948..2294178 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C1P57_RS11470 () | 2294317..2294691 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C1P57_RS11475 () | 2294695..2295566 | + | 872 | Protein_2218 | copper homeostasis membrane protein CopD | - |
| C1P57_RS11480 () | 2295579..2295920 | + | 342 | WP_134795701.1 | YebY family protein | - |
| - | 2295948..2296182 | - | 235 | - | - | Antitoxin Detail |
| - | 2296078..2296181 | + | 104 | - | - | Toxin Detail |
| C1P57_RS11485 () | 2296313..2297389 | - | 1077 | WP_134795702.1 | hypothetical protein ; Integrase | Integrase |
| C1P57_RS11495 () | 2297606..2298762 | + | 1157 | WP_086020934.1 | IS3 family transposase ISSd1 | Transposase |
| C1P57_RS11500 () | 2298787..2298903 | - | 117 | WP_284541181.1 | excisionase | - |
| C1P57_RS11505 () | 2299014..2299202 | - | 189 | WP_000276806.1 | DUF1187 family protein | - |
| - () | 2299018..2299196 | + | 179 | NuclAT_0 | - | - |
| - () | 2299018..2299196 | + | 179 | NuclAT_0 | - | - |
| - () | 2299018..2299196 | + | 179 | NuclAT_0 | - | - |
| - () | 2299018..2299196 | + | 179 | NuclAT_0 | - | - |
| C1P57_RS11510 () | 2299242..2299481 | - | 240 | WP_000932577.1 | hypothetical protein | - |
| C1P57_RS11515 () | 2299660..2300816 | + | 1157 | WP_134795703.1 | IS3 family transposase ISSd1 | Transposase |
| C1P57_RS11520 () | 2300858..2301364 | + | 507 | Protein_2226 | IS4 family transposase ISSfl1 | Transposase |
| C1P57_RS11525 () | 2301411..2301593 | + | 183 | WP_001224662.1 | hypothetical protein | - |
| C1P57_RS24745 () | 2301586..2301762 | + | 177 | WP_000753060.1 | hypothetical protein | - |
| C1P57_RS25230 () | 2301759..2302087 | + | 329 | Protein_2229 | hypothetical protein | - |
| C1P57_RS11540 () | 2302386..2302673 | - | 288 | WP_000090004.1 | hypothetical protein | - |
| C1P57_RS11545 () | 2303001..2303549 | + | 549 | WP_004992711.1 | ORF6N domain-containing protein | - |
| C1P57_RS11550 () | 2303819..2303974 | + | 156 | WP_086021052.1 | Hok/Gef family protein | - |
| C1P57_RS11555 () | 2304224..2304511 | + | 288 | WP_000687440.1 | hypothetical protein | - |
| C1P57_RS11560 () | 2304550..2305149 | + | 600 | WP_000940340.1 | DUF1367 family protein | - |
| C1P57_RS11565 () | 2305149..2305439 | + | 291 | WP_000228032.1 | DUF1364 domain-containing protein | - |
| C1P57_RS11570 () | 2305436..2305990 | + | 555 | WP_000640130.1 | DUF1133 family protein | - |
| C1P57_RS24750 () | 2305987..2306106 | + | 120 | WP_004977456.1 | ash family protein | - |
| C1P57_RS11575 () | 2306260..2306817 | + | 558 | WP_000218024.1 | ORF6N domain-containing protein | - |
| C1P57_RS11610 () | 2308014..2308229 | + | 216 | WP_000284485.1 | class II holin family protein | - |
| C1P57_RS11615 () | 2308229..2308726 | + | 498 | WP_000075178.1 | lysozyme RrrD | - |
| C1P57_RS24755 () | 2308723..2309187 | + | 465 | WP_171764985.1 | lysis system i-spanin subunit Rz | - |
| C1P57_RS25235 () | 2309325..2309431 | + | 107 | Protein_2242 | hypothetical protein | - |
| C1P57_RS11630 () | 2310660..2311225 | + | 566 | Protein_2244 | phage tail protein | - |
| C1P57_RS11635 () | 2311176..2311799 | + | 624 | WP_134795697.1 | DUF4376 domain-containing protein | - |
| C1P57_RS11645 () | 2311979..2313685 | - | 1707 | WP_000936821.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| C1P57_RS11655 () | 2314436..2315092 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C1P57_RS11660 () | 2315093..2315284 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C1P57_RS11665 () | 2315389..2315625 | - | 237 | WP_001295499.1 | YebV family protein | - |
| C1P57_RS11670 () | 2315741..2317180 | - | 1440 | Protein_2250 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C1P57_RS11675 () | 2317260..2319893 | - | 2634 | WP_004992636.1 | hypothetical protein | VF |
| C1P57_RS11680 () | 2319862..2321144 | - | 1283 | Protein_2252 | membrane integrity lipid transport subunit YebS | - |
| C1P57_RS11685 () | 2321274..2321771 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| C1P57_RS11690 () | 2321868..2322566 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| C1P57_RS11695 () | 2322586..2324634 | + | 2049 | WP_078167035.1 | carboxy terminal-processing peptidase | - |
| C1P57_RS11700 () | 2324826..2325707 | + | 882 | WP_000984517.1 | protease HtpX | - |
| C1P57_RS11705 () | 2325753..2327125 | - | 1373 | Protein_2257 | MFS transporter | - |
| C1P57_RS11710 () | 2327302..2328093 | + | 792 | WP_072770458.1 | DNA-binding transcriptional regulator KdgR | - |
| C1P57_RS11715 () | 2328237..2328476 | - | 240 | WP_001211011.1 | YobH family protein | - |
| C1P57_RS11720 () | 2328635..2328778 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| C1P57_RS11725 () | 2328853..2329140 | + | 288 | WP_134795705.1 | YebO family protein | - |
| C1P57_RS11730 () | 2329810..2329953 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| C1P57_RS11735 () | 2329966..2330175 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| C1P57_RS11740 () | 2330341..2331143 | + | 803 | Protein_2264 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| C1P57_RS11745 () | 2331140..2331706 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| C1P57_RS11750 () | 2332135..2332593 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| C1P57_RS11755 () | 2332647..2333498 | - | 852 | WP_134795706.1 | PTS mannose transporter subunit IID | - |
| C1P57_RS11760 () | 2333511..2334311 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| C1P57_RS11765 () | 2334374..2335345 | - | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
| C1P57_RS25575 () | 2335662..2335820 | + | 159 | WP_274542039.1 | protein YoaL | - |
| C1P57_RS11770 () | 2335808..2337364 | + | 1557 | WP_000394983.1 | CNNM family cation transport protein YoaE | - |
| C1P57_RS11775 () | 2337368..2338897 | - | 1530 | WP_134795707.1 | putative cyclic di-GMP phosphodiesterase PdeD | VF |
| C1P57_RS11785 () | 2340024..2340233 | - | 210 | Protein_2274 | cyclic diguanylate phosphodiesterase | - |
| C1P57_RS11790 () | 2340364..2341728 | - | 1365 | WP_000624283.1 | L-serine ammonia-lyase | - |
| C1P57_RS11795 () | 2341912..2342490 | - | 579 | WP_000456732.1 | CoA pyrophosphatase | - |
| C1P57_RS11800 () | 2342494..2343855 | - | 1362 | WP_000855019.1 | aminodeoxychorismate synthase component 1 | - |
| C1P57_RS11805 () | 2343929..2344108 | + | 180 | WP_000457334.1 | YoaH family protein | - |
| C1P57_RS11810 () | 2344228..2344526 | - | 299 | Protein_2279 | DUF1889 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|