Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2295948..2296182 | Replicon | chromosome |
| Accession | NZ_CP026846 | ||
| Organism | Shigella boydii strain 59-2708 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2296078..2296181 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2295948..2296182 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P57_RS11455 | 2292504..2293166 | - | 663 | WP_000944257.1 | exodeoxyribonuclease X | - |
| C1P57_RS11460 | 2293190..2293846 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| C1P57_RS11465 | 2293948..2294178 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C1P57_RS11470 | 2294317..2294691 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C1P57_RS11475 | 2294695..2295566 | + | 872 | Protein_2218 | copper homeostasis membrane protein CopD | - |
| C1P57_RS11480 | 2295579..2295920 | + | 342 | WP_134795701.1 | YebY family protein | - |
| - | 2295948..2296182 | - | 235 | - | - | Antitoxin |
| - | 2296078..2296181 | + | 104 | - | - | Toxin |
| C1P57_RS11485 | 2296313..2297389 | - | 1077 | WP_134795702.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| C1P57_RS11495 | 2297606..2298762 | + | 1157 | WP_086020934.1 | IS3-like element IS600 family transposase | - |
| C1P57_RS11500 | 2298787..2298903 | - | 117 | WP_284541181.1 | excisionase | - |
| C1P57_RS11505 | 2299014..2299202 | - | 189 | WP_000276806.1 | DUF1187 family protein | - |
| - | 2299018..2299196 | + | 179 | NuclAT_0 | - | - |
| - | 2299018..2299196 | + | 179 | NuclAT_0 | - | - |
| - | 2299018..2299196 | + | 179 | NuclAT_0 | - | - |
| - | 2299018..2299196 | + | 179 | NuclAT_0 | - | - |
| C1P57_RS11510 | 2299242..2299481 | - | 240 | WP_000932577.1 | hypothetical protein | - |
| C1P57_RS11515 | 2299660..2300816 | + | 1157 | WP_134795703.1 | IS3-like element IS600 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 | 2295579..2340233 | 44654 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T96437 NZ_CP026846:2296078-2296181 [Shigella boydii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT96437 NZ_CP026846:c2296182-2295948 [Shigella boydii]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCAGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCAGTTTTTTTAT
