MGE detailed information
MGE type: Prophage MGE length: 20810 bp
Accession: NZ_CP026846 Location: 1907103..1927912 Organism: Shigella boydii strain 59-2708 Replicon: chromosome
Accession: NZ_CP026846 Location: 1907103..1927912 Organism: Shigella boydii strain 59-2708 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P57_RS09370 (1902202) | 1902202..1903117 | + | 916 | Protein_1822 | glycine betaine ABC transporter substrate-binding protein OsmF | - |
| C1P57_RS09375 (1903124) | 1903124..1904238 | + | 1115 | Protein_1823 | glycine betaine ABC transporter permease YehY | - |
| C1P57_RS09380 (1904231) | 1904231..1905157 | + | 927 | WP_000569361.1 | glycine betaine ABC transporter ATP binding protein YehX | - |
| C1P57_RS09385 (1905162) | 1905162..1905893 | + | 732 | WP_000783120.1 | glycine betaine ABC transporter permease YehW | - |
| C1P57_RS09390 (1905874) | 1905874..1905981 | - | 108 | WP_001216963.1 | protein YohO | - |
| C1P57_RS09395 (1906041) | 1906041..1906742 | - | 702 | WP_029208330.1 | HTH-type transcriptional regulator MlrA | - |
| C1P57_RS09400 (1906763) | 1906763..1907798 | - | 1036 | Protein_1828 | site-specific integrase | - |
| C1P57_RS09405 (1907823) | 1907823..1908005 | - | 183 | WP_134795662.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P57_RS09410 (1908021) | 1908021..1909177 | + | 1157 | WP_086020934.1 | IS3 family transposase ISSd1 | Transposase |
| C1P57_RS09415 (1909269) | 1909269..1909856 | + | 588 | Protein_1831 | DNA replication protein | - |
| C1P57_RS09420 (1909846) | 1909846..1911282 | + | 1437 | WP_134795663.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| C1P57_RS09425 (1911359) | 1911359..1911799 | + | 441 | WP_000736913.1 | recombination protein NinB | - |
| C1P57_RS09430 (1911796) | 1911796..1912323 | + | 528 | WP_000153280.1 | phage N-6-adenine-methyltransferase | - |
| C1P57_RS09435 (1912320) | 1912320..1912496 | + | 177 | WP_078167352.1 | NinE family protein | - |
| C1P57_RS09440 (1912538) | 1912538..1912846 | - | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| C1P57_RS09445 (1912836) | 1912836..1913165 | - | 330 | WP_024258354.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C1P57_RS09450 (1913372) | 1913372..1913758 | - | 387 | Protein_1838 | TerL protein | - |
| C1P57_RS09455 (1913761) | 1913761..1914318 | - | 558 | WP_078167353.1 | terminase small subunit | - |
| C1P57_RS09460 (1914420) | 1914420..1914677 | - | 258 | WP_078167354.1 | hypothetical protein | - |
| C1P57_RS09465 (1914674) | 1914674..1915171 | - | 498 | WP_078167355.1 | KilA-N domain-containing protein | - |
| C1P57_RS24710 (1915377) | 1915377..1915844 | - | 468 | WP_078167356.1 | lysis protein | - |
| C1P57_RS09475 (1915841) | 1915841..1916338 | - | 498 | WP_134795664.1 | lysozyme RrrD | - |
| C1P57_RS09480 (1916338) | 1916338..1916553 | - | 216 | WP_077123425.1 | class II holin family protein | - |
| C1P57_RS09495 (1917086) | 1917086..1917460 | - | 375 | Protein_1845 | antitermination protein | - |
| C1P57_RS09505 (1918704) | 1918704..1919123 | + | 420 | Protein_1847 | amino acid permease | - |
| C1P57_RS09510 (1919124) | 1919124..1920032 | - | 909 | WP_078167258.1 | LysR family transcriptional regulator | - |
| C1P57_RS09515 (1920132) | 1920132..1920722 | + | 591 | WP_001190385.1 | NAD(P)H oxidoreductase | - |
| C1P57_RS09520 (1920804) | 1920804..1921544 | - | 741 | WP_000111044.1 | pyruvate formate lyase 1-activating protein | - |
| C1P57_RS09525 (1921736) | 1921736..1924018 | - | 2283 | WP_001292813.1 | formate C-acetyltransferase | - |
| C1P57_RS09530 (1924073) | 1924073..1924930 | - | 858 | WP_000642546.1 | formate transporter FocA | - |
| C1P57_RS09535 (1925336) | 1925336..1927096 | - | 1761 | WP_078167257.1 | 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO | - |
| C1P57_RS09540 (1927226) | 1927226..1927917 | + | 692 | Protein_1854 | DUF421 domain-containing protein | - |
| C1P57_RS09545 (1928116) | 1928116..1929204 | + | 1089 | WP_078167256.1 | 3-phosphoserine/phosphohydroxythreonine transaminase | - |
| C1P57_RS09550 (1929275) | 1929275..1930558 | + | 1284 | WP_078167255.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| C1P57_RS09555 (1930684) | 1930684..1932029 | + | 1346 | Protein_1857 | IS4-like element IS4 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|