MGE detailed information
MGE type: Prophage MGE length: 57105 bp
Accession: NZ_CP026834 Location: 83360..140464 Organism: Shigella dysenteriae strain ATCC 49347 Replicon: chromosome
Accession: NZ_CP026834 Location: 83360..140464 Organism: Shigella dysenteriae strain ATCC 49347 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5B83_RS00380 () | 78555..79559 | + | 1005 | WP_000994889.1 | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF | - |
| C5B83_RS00385 () | 79612..79941 | - | 330 | WP_000366959.1 | HI1450 family dsDNA-mimic protein | - |
| C5B83_RS00390 () | 79976..81436 | - | 1461 | WP_000214508.1 | cardiolipin synthase | - |
| C5B83_RS00395 () | 81579..81752 | + | 174 | WP_001309467.1 | YciY family protein | - |
| C5B83_RS00400 () | 81807..83060 | - | 1254 | WP_005031395.1 | voltage-gated potassium channel protein | - |
| C5B83_RS00405 () | 83360..83656 | - | 297 | WP_000967595.1 | YciI family protein | - |
| C5B83_RS00410 () | 83871..84599 | + | 729 | WP_171764168.1 | TonB system transport protein TonB | - |
| C5B83_RS00415 () | 84639..85037 | - | 399 | WP_000108160.1 | acyl-CoA thioester hydrolase YciA | - |
| C5B83_RS00420 () | 85142..85681 | - | 540 | WP_000808667.1 | septation protein A | - |
| C5B83_RS00425 () | 85711..86454 | - | 744 | WP_000028541.1 | YciC family protein | - |
| C5B83_RS00430 () | 86482..86571 | - | 90 | Protein_82 | YkgJ family cysteine cluster protein | - |
| C5B83_RS00435 () | 86811..87449 | + | 639 | WP_000737224.1 | outer membrane protein OmpW | - |
| C5B83_RS00440 () | 87493..88623 | - | 1131 | WP_000113688.1 | hypothetical protein ; Integrase | Integrase |
| C5B83_RS00445 () | 88601..88849 | - | 249 | WP_000113189.1 | excisionase | - |
| C5B83_RS00450 () | 88914..91388 | - | 2475 | WP_073816805.1 | exonuclease | - |
| C5B83_RS00455 () | 91484..91672 | - | 189 | WP_000199480.1 | DUF1482 family protein | - |
| C5B83_RS26340 () | 91669..91962 | - | 294 | WP_012601940.1 | cell division inhibition protein DicB | - |
| C5B83_RS00465 () | 92390..92764 | - | 375 | WP_005031383.1 | hypothetical protein | - |
| C5B83_RS00470 () | 92776..92928 | - | 153 | WP_000379596.1 | DUF1391 family protein | - |
| C5B83_RS00475 () | 93118..93525 | - | 408 | WP_001003379.1 | helix-turn-helix domain-containing protein | - |
| C5B83_RS00480 () | 93603..93830 | + | 228 | WP_000476986.1 | Cro/CI family transcriptional regulator | - |
| C5B83_RS00485 () | 93814..94365 | + | 552 | WP_000705383.1 | toxin YdaT family protein | - |
| C5B83_RS00490 () | 94337..95377 | + | 1041 | WP_000020541.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| C5B83_RS00495 () | 95370..95831 | + | 462 | WP_000139457.1 | replication protein P | - |
| C5B83_RS00500 () | 95865..96635 | + | 771 | WP_000450707.1 | DUF1627 domain-containing protein | - |
| C5B83_RS00505 () | 96651..97043 | + | 393 | WP_001141099.1 | DUF977 family protein | - |
| C5B83_RS00510 () | 97040..97336 | + | 297 | WP_001266130.1 | DUF4406 domain-containing protein | - |
| C5B83_RS00515 () | 97333..97794 | + | 462 | WP_001209470.1 | sigma-E factor regulatory protein RseB domain-containing protein | - |
| C5B83_RS00520 () | 97772..98128 | + | 357 | WP_000403782.1 | hypothetical protein | - |
| C5B83_RS00525 () | 98224..98406 | + | 183 | WP_001224665.1 | hypothetical protein | - |
| C5B83_RS25465 () | 98399..98575 | + | 177 | WP_000753053.1 | hypothetical protein | - |
| C5B83_RS00530 () | 98572..98931 | + | 360 | WP_001289986.1 | hypothetical protein | - |
| C5B83_RS00535 () | 98932..99147 | + | 216 | WP_000510387.1 | hypothetical protein | - |
| C5B83_RS00540 () | 99149..99367 | + | 219 | WP_001142588.1 | DUF4014 family protein | - |
| C5B83_RS00545 () | 99369..99632 | + | 264 | WP_000224216.1 | hypothetical protein | - |
| C5B83_RS00550 () | 99643..99810 | + | 168 | WP_000207997.1 | hypothetical protein | - |
| C5B83_RS00555 () | 100010..101238 | + | 1229 | WP_167544911.1 | IS3 family transposase IS2 | Transposase |
| C5B83_RS00560 () | 101223..101486 | + | 264 | WP_242412557.1 | hypothetical protein | - |
| - | 101708..101766 | - | 59 | - | - | Antitoxin Detail |
| C5B83_RS00565 () | 101778..101933 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| C5B83_RS00570 () | 102150..102401 | + | 252 | WP_000980988.1 | protein Rem | - |
| C5B83_RS00575 () | 102468..102746 | + | 279 | WP_032335658.1 | hypothetical protein | - |
| C5B83_RS00580 () | 102748..103794 | + | 1047 | WP_001265091.1 | DUF968 domain-containing protein | - |
| C5B83_RS00585 () | 103807..104181 | + | 375 | WP_073817556.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C5B83_RS00590 () | 104178..104999 | + | 822 | WP_000762933.1 | antitermination protein | - |
| C5B83_RS00595 () | 105226..105466 | + | 241 | Protein_116 | hypothetical protein | - |
| C5B83_RS00600 () | 105574..106632 | + | 1059 | WP_000935541.1 | site-specific DNA-methyltransferase | - |
| C5B83_RS00615 () | 106922..107032 | + | 111 | WP_046891796.1 | DUF3927 family protein | - |
| C5B83_RS25765 () | 107585..107710 | - | 126 | Protein_119 | hypothetical protein | - |
| C5B83_RS00625 () | 107781..108116 | - | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| C5B83_RS00630 () | 108376..110232 | + | 1857 | WP_000874316.1 | SASA family carbohydrate esterase | - |
| C5B83_RS00635 () | 110379..111607 | + | 1229 | WP_171764164.1 | IS3 family transposase IS2 | Transposase |
| C5B83_RS00640 () | 111719..111934 | + | 216 | WP_000284510.1 | class II holin family protein | - |
| C5B83_RS00645 () | 111939..112283 | + | 345 | WP_000193262.1 | YdfR family protein | - |
| C5B83_RS00650 () | 112249..112521 | - | 273 | WP_000369850.1 | hypothetical protein | - |
| C5B83_RS00655 () | 112627..113160 | + | 534 | WP_000992072.1 | lysozyme | - |
| C5B83_RS25470 () | 113459..113926 | + | 468 | WP_001082562.1 | lysis protein | - |
| C5B83_RS00670 () | 114368..114916 | + | 549 | WP_000867569.1 | terminase small subunit | - |
| C5B83_RS00675 () | 114888..116816 | + | 1929 | WP_024259736.1 | phage terminase large subunit family protein | - |
| C5B83_RS00680 () | 116800..117006 | + | 207 | WP_000259002.1 | gpW family head-tail joining protein | - |
| C5B83_RS00685 () | 117003..118595 | + | 1593 | WP_000831760.1 | phage portal protein | - |
| C5B83_RS00690 () | 118585..120090 | + | 1506 | WP_073817292.1 | S49 family peptidase | - |
| C5B83_RS00695 () | 120127..120474 | + | 348 | WP_000256823.1 | head decoration protein | - |
| C5B83_RS00700 () | 120532..121560 | + | 1029 | WP_000522661.1 | major capsid protein | - |
| C5B83_RS00705 () | 121612..121995 | + | 384 | WP_000201502.1 | DNA-packaging protein FI | - |
| C5B83_RS00710 () | 121988..122341 | + | 354 | WP_001204568.1 | head-tail joining protein | - |
| C5B83_RS00715 () | 122357..122890 | + | 534 | WP_000974980.1 | phage tail protein | - |
| C5B83_RS00720 () | 122887..123282 | + | 396 | WP_000683079.1 | phage minor tail U family protein | - |
| C5B83_RS00725 () | 123284..123895 | + | 612 | Protein_139 | Ig domain-containing protein | - |
| C5B83_RS00730 () | 123909..124340 | + | 432 | WP_000479095.1 | phage minor tail protein G | - |
| C5B83_RS00735 () | 124367..124780 | + | 414 | WP_000533402.1 | phage tail assembly protein T | - |
| C5B83_RS00740 () | 124761..127334 | + | 2574 | WP_046891712.1 | phage tail tape measure protein | - |
| C5B83_RS00745 () | 127331..127660 | + | 330 | WP_000847332.1 | phage tail protein | - |
| C5B83_RS00750 () | 127660..128358 | + | 699 | WP_001152648.1 | phage minor tail protein L | - |
| C5B83_RS00755 () | 128363..129106 | + | 744 | WP_000140704.1 | C40 family peptidase | - |
| C5B83_RS00760 () | 129103..129645 | + | 543 | WP_000847633.1 | tail assembly protein | - |
| C5B83_RS25350 () | 129718..130056 | + | 339 | WP_153933134.1 | hypothetical protein | - |
| C5B83_RS00770 () | 130123..133602 | + | 3480 | WP_129592827.1 | host specificity protein J | - |
| C5B83_RS00775 () | 133670..134269 | + | 600 | WP_001228225.1 | Outer membrane protein X | VF |
| C5B83_RS00780 () | 134334..137309 | + | 2976 | WP_129592828.1 | phage tail protein | - |
| C5B83_RS00785 () | 137321..137893 | + | 573 | WP_001294928.1 | tail fiber assembly protein | - |
| C5B83_RS00795 () | 137948..138616 | - | 669 | WP_000240999.1 | class I SAM-dependent methyltransferase | - |
| C5B83_RS00800 () | 138673..138941 | + | 269 | Protein_153 | tail fiber assembly protein | - |
| C5B83_RS25475 () | 139056..139226 | + | 171 | WP_000251936.1 | hypothetical protein | - |
| C5B83_RS00805 () | 139531..139656 | + | 126 | Protein_155 | OmpW family outer membrane protein | - |
| C5B83_RS00810 () | 139767..140464 | + | 698 | WP_094106546.1 | IS1 family transposase IS1X2 | Transposase |
| C5B83_RS00815 () | 140708..141514 | - | 807 | WP_000443080.1 | tryptophan synthase subunit alpha | - |
| C5B83_RS00820 () | 141514..142707 | - | 1194 | WP_073817177.1 | tryptophan synthase subunit beta | - |
| C5B83_RS00825 () | 142719..144080 | - | 1362 | WP_000983895.1 | bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|