MGE detailed information
MGE type: Prophage MGE length: 70797 bp
Accession: NZ_CP026832 Location: 1944979..2015775 Organism: Shigella dysenteriae strain ATCC 49346 Replicon: chromosome
Accession: NZ_CP026832 Location: 1944979..2015775 Organism: Shigella dysenteriae strain ATCC 49346 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5B81_RS10045 () | 1940806..1941702 | - | 897 | Protein_1919 | IS4 family transposase | - |
| C5B81_RS10050 () | 1941826..1944501 | - | 2676 | WP_000301691.1 | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | - |
| C5B81_RS26665 () | 1944895..1944948 | + | 54 | WP_211180492.1 | protein YchT | - |
| C5B81_RS10055 () | 1944979..1945626 | + | 648 | WP_000616554.1 | NAAT family transporter YchE | - |
| C5B81_RS10060 () | 1945753..1946450 | + | 698 | WP_284513010.1 | IS1 family transposase IS1X2 | Transposase |
| C5B81_RS10065 () | 1946499..1947158 | + | 660 | Protein_1924 | AIDA-I family autotransporter YfaL | - |
| C5B81_RS10070 () | 1947214..1947911 | + | 698 | WP_094106546.1 | IS1 family transposase IS1X2 | Transposase |
| C5B81_RS25945 () | 1948022..1948183 | - | 162 | WP_005005702.1 | hypothetical protein | - |
| C5B81_RS10080 () | 1948602..1950233 | + | 1632 | WP_001297114.1 | oligopeptide ABC transporter substrate-binding protein OppA | - |
| C5B81_RS10085 () | 1950319..1951239 | + | 921 | WP_000911111.1 | oligopeptide ABC transporter permease OppB | - |
| C5B81_RS10090 () | 1951254..1952162 | + | 909 | WP_000979650.1 | oligopeptide ABC transporter permease OppC | - |
| C5B81_RS10095 () | 1952174..1953187 | + | 1014 | WP_000110967.1 | Oligopeptide transport ATP-binding protein OppD | VF |
| C5B81_RS10100 () | 1953184..1954188 | + | 1005 | WP_000994889.1 | Oligopeptide transport ATP-binding protein OppF | VF |
| C5B81_RS10105 () | 1954241..1954570 | - | 330 | WP_000366959.1 | HI1450 family dsDNA-mimic protein | - |
| C5B81_RS10110 () | 1954605..1956064 | - | 1460 | Protein_1933 | cardiolipin synthase | - |
| C5B81_RS10115 () | 1956206..1956379 | + | 174 | WP_001309467.1 | YciY family protein | - |
| C5B81_RS10120 () | 1956434..1957687 | - | 1254 | WP_005031395.1 | voltage-gated potassium channel protein | - |
| C5B81_RS10125 () | 1957987..1958283 | - | 297 | WP_000967595.1 | YciI family protein | - |
| C5B81_RS10130 () | 1958498..1959226 | + | 729 | WP_162281807.1 | Protein TonB | VF |
| C5B81_RS10135 () | 1959266..1959664 | - | 399 | WP_000108160.1 | acyl-CoA thioester hydrolase YciA | - |
| C5B81_RS10140 () | 1959769..1960308 | - | 540 | WP_000808667.1 | septation protein A | - |
| C5B81_RS10145 () | 1960338..1961081 | - | 744 | WP_000028541.1 | YciC family protein | - |
| C5B81_RS10150 () | 1961109..1961198 | - | 90 | Protein_1941 | YkgJ family cysteine cluster protein | - |
| C5B81_RS10155 () | 1961438..1962076 | + | 639 | WP_000737224.1 | outer membrane protein OmpW | - |
| C5B81_RS10160 () | 1962122..1963252 | - | 1131 | WP_000113688.1 | hypothetical protein ; Integrase | Integrase |
| C5B81_RS10165 () | 1963230..1963478 | - | 249 | WP_000113189.1 | excisionase | - |
| C5B81_RS10170 () | 1963543..1966017 | - | 2475 | WP_000048473.1 | exonuclease | - |
| C5B81_RS10175 () | 1966113..1966301 | - | 189 | WP_000199480.1 | DUF1482 family protein | - |
| C5B81_RS10180 () | 1966298..1966456 | - | 159 | WP_032335657.1 | cell division inhibition protein DicB | - |
| C5B81_RS10190 () | 1967795..1968169 | - | 375 | WP_005031383.1 | hypothetical protein | - |
| C5B81_RS10195 () | 1968181..1968333 | - | 153 | WP_000379596.1 | DUF1391 family protein | - |
| C5B81_RS10200 () | 1968523..1968930 | - | 408 | WP_001003379.1 | helix-turn-helix domain-containing protein | - |
| C5B81_RS10205 () | 1969008..1969235 | + | 228 | WP_000476986.1 | Cro/CI family transcriptional regulator | - |
| C5B81_RS10210 () | 1969219..1969770 | + | 552 | WP_000705383.1 | toxin YdaT family protein | - |
| C5B81_RS10215 () | 1969742..1970782 | + | 1041 | WP_134801093.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| C5B81_RS10220 () | 1970775..1971236 | + | 462 | WP_000139457.1 | replication protein P | - |
| C5B81_RS10225 () | 1971270..1972040 | + | 771 | WP_000450707.1 | DUF1627 domain-containing protein | - |
| C5B81_RS10230 () | 1972056..1972448 | + | 393 | WP_001141099.1 | DUF977 family protein | - |
| C5B81_RS10235 () | 1972445..1972741 | + | 297 | WP_001266130.1 | DUF4406 domain-containing protein | - |
| C5B81_RS10240 () | 1972738..1973199 | + | 462 | WP_001209470.1 | sigma-E factor regulatory protein RseB domain-containing protein | - |
| C5B81_RS10245 () | 1973177..1973533 | + | 357 | WP_000403782.1 | hypothetical protein | - |
| C5B81_RS10250 () | 1973629..1973811 | + | 183 | WP_001224665.1 | hypothetical protein | - |
| C5B81_RS26115 () | 1973804..1973980 | + | 177 | WP_000753053.1 | hypothetical protein | - |
| C5B81_RS10255 () | 1973977..1974336 | + | 360 | WP_001289986.1 | hypothetical protein | - |
| C5B81_RS10260 () | 1974337..1974552 | + | 216 | WP_000510389.1 | hypothetical protein | - |
| C5B81_RS10265 () | 1974554..1974772 | + | 219 | WP_001142588.1 | DUF4014 family protein | - |
| C5B81_RS10270 () | 1974774..1975037 | + | 264 | WP_000224216.1 | hypothetical protein | - |
| C5B81_RS10275 () | 1975048..1975215 | + | 168 | WP_000207997.1 | hypothetical protein | - |
| C5B81_RS10280 () | 1975415..1976643 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| C5B81_RS10285 () | 1976628..1976891 | + | 264 | WP_242412557.1 | hypothetical protein | - |
| - | 1977113..1977171 | - | 59 | - | - | Antitoxin Detail |
| C5B81_RS10290 () | 1977183..1977338 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| C5B81_RS10295 () | 1977555..1977806 | + | 252 | WP_000980988.1 | protein Rem | - |
| C5B81_RS10300 () | 1977873..1978151 | + | 279 | WP_032335658.1 | hypothetical protein | - |
| C5B81_RS10305 () | 1978153..1979199 | + | 1047 | WP_001265091.1 | DUF968 domain-containing protein | - |
| C5B81_RS10310 () | 1979212..1979586 | + | 375 | WP_000904094.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C5B81_RS10315 () | 1979583..1980404 | + | 822 | WP_000762933.1 | antitermination protein | - |
| C5B81_RS10320 () | 1980631..1980871 | + | 241 | Protein_1976 | hypothetical protein | - |
| C5B81_RS10325 () | 1980979..1982037 | + | 1059 | WP_134801094.1 | site-specific DNA-methyltransferase | - |
| C5B81_RS10340 () | 1982327..1982437 | + | 111 | WP_046891796.1 | DUF3927 family protein | - |
| C5B81_RS26670 () | 1982990..1983115 | - | 126 | Protein_1979 | hypothetical protein | - |
| C5B81_RS10350 () | 1983186..1983521 | - | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| C5B81_RS10355 () | 1983781..1985637 | + | 1857 | WP_000874316.1 | SASA family carbohydrate esterase | - |
| C5B81_RS10360 () | 1985784..1987011 | + | 1228 | WP_284529794.1 | IS3 family transposase IS2 | Transposase |
| C5B81_RS10365 () | 1987123..1987338 | + | 216 | WP_000284510.1 | class II holin family protein | - |
| C5B81_RS10370 () | 1987343..1987687 | + | 345 | WP_000193262.1 | YdfR family protein | - |
| C5B81_RS10375 () | 1987653..1987925 | - | 273 | WP_000369850.1 | hypothetical protein | - |
| C5B81_RS10380 () | 1988031..1988564 | + | 534 | WP_000992072.1 | lysozyme | - |
| C5B81_RS26120 () | 1988863..1989330 | + | 468 | WP_001082562.1 | lysis protein | - |
| C5B81_RS10395 () | 1989772..1990320 | + | 549 | WP_000867569.1 | terminase small subunit | - |
| C5B81_RS10400 () | 1990292..1992220 | + | 1929 | WP_024259718.1 | phage terminase large subunit family protein | - |
| C5B81_RS10405 () | 1992204..1992410 | + | 207 | WP_000259002.1 | gpW family head-tail joining protein | - |
| C5B81_RS10410 () | 1992407..1993998 | + | 1592 | Protein_1991 | phage portal protein | - |
| C5B81_RS10415 () | 1993988..1995493 | + | 1506 | Protein_1992 | S49 family peptidase | - |
| C5B81_RS10420 () | 1995530..1995877 | + | 348 | WP_000256833.1 | head decoration protein | - |
| C5B81_RS10425 () | 1995935..1996963 | + | 1029 | WP_000522588.1 | major capsid protein | - |
| C5B81_RS10430 () | 1997015..1997398 | + | 384 | WP_000201502.1 | DNA-packaging protein FI | - |
| C5B81_RS10435 () | 1997391..1997744 | + | 354 | WP_134801095.1 | head-tail joining protein | - |
| C5B81_RS10440 () | 1997760..1998293 | + | 534 | WP_000974980.1 | phage tail protein | - |
| C5B81_RS10445 () | 1998290..1998685 | + | 396 | WP_000683079.1 | phage minor tail U family protein | - |
| C5B81_RS10450 () | 1998687..1999298 | + | 612 | Protein_1999 | Ig domain-containing protein | - |
| C5B81_RS10455 () | 1999312..1999743 | + | 432 | WP_000479095.1 | phage minor tail protein G | - |
| C5B81_RS10460 () | 1999770..2000183 | + | 414 | WP_000533402.1 | phage tail assembly protein T | - |
| C5B81_RS10465 () | 2000164..2002646 | + | 2483 | Protein_2002 | phage tail tape measure protein | - |
| C5B81_RS10470 () | 2002643..2002972 | + | 330 | WP_000847332.1 | phage tail protein | - |
| C5B81_RS10475 () | 2002972..2003670 | + | 699 | WP_001152648.1 | phage minor tail protein L | - |
| C5B81_RS10480 () | 2003675..2004418 | + | 744 | WP_000140710.1 | C40 family peptidase | - |
| C5B81_RS10485 () | 2004415..2004957 | + | 543 | WP_000847633.1 | tail assembly protein | - |
| C5B81_RS10490 () | 2005030..2005326 | + | 297 | WP_134800674.1 | hypothetical protein | - |
| C5B81_RS10495 () | 2005434..2008913 | + | 3480 | WP_000515473.1 | host specificity protein J | - |
| C5B81_RS10500 () | 2008981..2009580 | + | 600 | WP_001228225.1 | Outer membrane protein X | VF |
| C5B81_RS10505 () | 2009645..2012620 | + | 2976 | WP_119178572.1 | phage tail protein | - |
| C5B81_RS10510 () | 2012632..2013204 | + | 573 | WP_001294928.1 | tail fiber assembly protein | - |
| C5B81_RS10520 () | 2013259..2013927 | - | 669 | WP_000240999.1 | class I SAM-dependent methyltransferase | - |
| C5B81_RS10525 () | 2013984..2014252 | + | 269 | Protein_2013 | tail fiber assembly protein | - |
| C5B81_RS26125 () | 2014367..2014537 | + | 171 | WP_000251936.1 | hypothetical protein | - |
| C5B81_RS10530 () | 2014842..2014967 | + | 126 | Protein_2015 | OmpW family outer membrane protein | - |
| C5B81_RS10535 () | 2015078..2015775 | + | 698 | WP_094096780.1 | IS1 family transposase IS1X2 | Transposase |
| C5B81_RS10540 () | 2016019..2016825 | - | 807 | WP_000443080.1 | tryptophan synthase subunit alpha | - |
| C5B81_RS10545 () | 2016825..2018018 | - | 1194 | WP_000209505.1 | tryptophan synthase subunit beta | - |
| C5B81_RS10550 () | 2018030..2019386 | - | 1357 | Protein_2019 | bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|