MGE detailed information
MGE type: Prophage MGE length: 87918 bp
Accession: NZ_CP026805 Location: 982432..1070349 Organism: Shigella dysenteriae strain 2017C-4522 Replicon: chromosome
Accession: NZ_CP026805 Location: 982432..1070349 Organism: Shigella dysenteriae strain 2017C-4522 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P73_RS05540 () | 977958..978227 | + | 270 | WP_000187358.1 | flagellar biosynthesis protein FliQ | - |
| C1P73_RS05545 () | 978236..979017 | + | 782 | Protein_1081 | flagellar biosynthetic protein FliR | - |
| C1P73_RS05555 () | 980093..980700 | + | 608 | Protein_1083 | transcriptional regulator RcsA | - |
| C1P73_RS05560 () | 980744..980932 | - | 189 | WP_000867217.1 | protein DsrB | - |
| C1P73_RS05565 () | 981095..981322 | + | 228 | WP_000844800.1 | peroxide/acid resistance protein YodD | - |
| C1P73_RS05570 () | 981620..982435 | + | 816 | WP_000491513.1 | mannosyl-3-phosphoglycerate phosphatase-related protein | - |
| C1P73_RS05575 () | 982432..984126 | - | 1695 | WP_077897541.1 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
| C1P73_RS05580 () | 984297..984479 | - | 183 | WP_000009307.1 | DUF2158 domain-containing protein | - |
| C1P73_RS05585 () | 984558..985475 | - | 918 | WP_129592878.1 | DUF808 domain-containing protein | - |
| C1P73_RS05590 () | 985648..986567 | + | 920 | Protein_1090 | drug/metabolite exporter YedA | - |
| C1P73_RS05595 () | 986556..987026 | - | 471 | WP_000786008.1 | VSPR family DNA mismatch endonuclease | - |
| C1P73_RS05600 () | 987007..988425 | - | 1419 | WP_001157235.1 | DNA-cytosine methyltransferase | - |
| C1P73_RS05605 () | 988492..989187 | - | 696 | WP_000365569.1 | phosphohydrolase | - |
| C1P73_RS05610 () | 989227..989508 | - | 282 | WP_001297704.1 | cell division protein DrpB | - |
| C1P73_RS05615 () | 990159..990737 | + | 579 | Protein_1095 | porin | - |
| C1P73_RS05625 () | 992071..992568 | + | 498 | Protein_1097 | porin | - |
| C1P73_RS05630 () | 992678..993375 | + | 698 | WP_094106546.1 | IS1 family transposase IS1X2 | Transposase |
| C1P73_RS25420 () | 993422..993790 | - | 369 | WP_284513933.1 | hypothetical protein | - |
| C1P73_RS25015 () | 993937..994056 | + | 120 | Protein_1100 | protein deglycase HchA | - |
| C1P73_RS05650 () | 994825..995565 | + | 741 | Protein_1102 | protein deglycase HchA | - |
| C1P73_RS05655 () | 995673..997031 | - | 1359 | WP_000826750.1 | two-component system sensor histidine kinase HprS | - |
| C1P73_RS05660 () | 997031..997702 | - | 672 | WP_001339045.1 | Sensor histidine kinase RcsC | VF |
| C1P73_RS05665 () | 997835..998248 | + | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| C1P73_RS05670 () | 998357..999361 | + | 1005 | WP_000740102.1 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| C1P73_RS05675 () | 999362..999997 | + | 636 | WP_001241113.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| C1P73_RS05680 () | 1000254..1000904 | + | 651 | WP_162281804.1 | metal-binding protein ZinT | - |
| C1P73_RS05685 () | 1001122..1002278 | + | 1157 | WP_094096479.1 | IS3 family transposase IS600 | Transposase |
| C1P73_RS05690 () | 1002514..1002609 | + | 96 | Protein_1110 | cytochrome B | - |
| C1P73_RS05700 () | 1003973..1004380 | + | 408 | Protein_1112 | cytochrome b | - |
| C1P73_RS05705 () | 1005281..1006449 | + | 1169 | WP_134800684.1 | IS3 family transposase ISLad1 | Transposase |
| C1P73_RS05715 () | 1006609..1006878 | - | 270 | Protein_1114 | tail fiber assembly protein | - |
| C1P73_RS05720 () | 1006935..1007483 | + | 549 | Protein_1115 | class I SAM-dependent methyltransferase | - |
| C1P73_RS05730 () | 1008248..1008379 | + | 132 | Protein_1117 | methyltransferase | - |
| C1P73_RS05740 () | 1009471..1011113 | + | 1643 | Protein_1119 | hypothetical protein | VF |
| C1P73_RS05750 () | 1011293..1011916 | - | 624 | WP_000551126.1 | DUF4376 domain-containing protein | - |
| C1P73_RS05755 () | 1011867..1013135 | - | 1269 | Protein_1121 | prophage tail fiber N-terminal domain-containing protein | - |
| C1P73_RS05760 () | 1013159..1013704 | - | 546 | WP_000902849.1 | tail fiber assembly protein | - |
| C1P73_RS25430 () | 1013707..1013775 | - | 69 | Protein_1123 | phage tail protein | - |
| C1P73_RS05765 () | 1013831..1014528 | + | 698 | WP_134795416.1 | IS1 family transposase IS1R | Transposase |
| C1P73_RS05770 () | 1014544..1015472 | + | 929 | Protein_1125 | IS3 family transposase IS600 | Transposase |
| C1P73_RS05780 () | 1015522..1016271 | - | 750 | Protein_1126 | hypothetical protein | - |
| C1P73_RS05785 () | 1016273..1016551 | - | 279 | WP_000929754.1 | hypothetical protein | - |
| C1P73_RS05795 () | 1016719..1016874 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 1016886..1016944 | + | 59 | - | - | Antitoxin Detail |
| C1P73_RS05810 () | 1017525..1017941 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| C1P73_RS05815 () | 1018053..1018274 | + | 222 | WP_134796774.1 | transposase | - |
| C1P73_RS05820 () | 1018271..1018432 | + | 162 | WP_000171090.1 | IS66 family transposase ISEc8 | Transposase |
| C1P73_RS05825 () | 1018429..1018776 | + | 348 | WP_000612610.1 | IS66 family transposase ISKpn24 | Transposase |
| C1P73_RS05830 () | 1018825..1020363 | + | 1539 | WP_000099181.1 | IS66 family transposase ISEc22 | Transposase |
| C1P73_RS05835 () | 1020413..1020868 | - | 456 | WP_000335375.1 | ead/Ea22-like family protein | - |
| C1P73_RS05840 () | 1020855..1021160 | - | 306 | WP_001266147.1 | DUF4406 domain-containing protein | - |
| C1P73_RS05845 () | 1021157..1021579 | - | 423 | WP_001151146.1 | DUF977 family protein | - |
| C1P73_RS05850 () | 1021620..1022690 | - | 1071 | WP_024259707.1 | hypothetical protein | - |
| C1P73_RS05855 () | 1022762..1023187 | - | 426 | WP_000693856.1 | toxin YdaT family protein | - |
| C1P73_RS05860 () | 1023184..1023453 | - | 270 | WP_001117462.1 | helix-turn-helix domain-containing protein | - |
| C1P73_RS05865 () | 1023469..1023705 | + | 237 | Protein_1140 | IS3 family transposase ISSd1 | Transposase |
| C1P73_RS05870 () | 1023761..1024458 | + | 698 | WP_134795416.1 | IS1 family transposase IS1R | Transposase |
| C1P73_RS05875 () | 1024474..1025402 | + | 929 | Protein_1142 | IS3 family transposase IS600 | Transposase |
| C1P73_RS05880 () | 1025443..1026035 | + | 593 | Protein_1143 | hypothetical protein ; Integrase | Integrase |
| C1P73_RS05890 () | 1026246..1027043 | + | 798 | WP_001302302.1 | DgsA anti-repressor MtfA | - |
| C1P73_RS05900 () | 1027533..1033794 | + | 6262 | Protein_1145 | Ig-like domain-containing protein | - |
| C1P73_RS05905 () | 1033859..1035015 | + | 1157 | WP_094112617.1 | IS3 family transposase IS600 | Transposase |
| C1P73_RS05910 () | 1035058..1036782 | + | 1725 | Protein_1147 | Ig-like domain-containing protein | - |
| C1P73_RS05915 () | 1037044..1037214 | - | 171 | Protein_1148 | lipopolysaccharide heptosyltransferase family protein | - |
| C1P73_RS05920 () | 1037681..1037682 | - | 2 | WP_284521009.1 | IS1 family transposase IS1X2 | Transposase |
| C1P73_RS05925 () | 1037981..1038196 | - | 216 | Protein_1150 | lipopolysaccharide heptosyltransferase family protein | - |
| C1P73_RS05935 () | 1039288..1040604 | + | 1317 | Protein_1152 | shikimate transporter | - |
| C1P73_RS05940 () | 1040706..1042159 | + | 1454 | Protein_1153 | AMP nucleosidase | - |
| C1P73_RS05945 () | 1042502..1042870 | + | 369 | Protein_1154 | transcriptional regulatory protein YeeN | VF |
| C1P73_RS05950 () | 1042927..1043624 | + | 698 | WP_226342157.1 | IS1 family transposase IS1X2 | Transposase |
| C1P73_RS05955 () | 1043639..1044007 | + | 369 | Protein_1156 | transcriptional regulatory protein YeeN | VF |
| C1P73_RS05965 () | 1044634..1045485 | - | 852 | Protein_1157 | toxic metabolite efflux MATE transporter YeeO | - |
| C1P73_RS05970 () | 1045541..1046238 | + | 698 | WP_226342157.1 | IS1 family transposase IS1X2 | Transposase |
| C1P73_RS05975 () | 1046254..1046895 | - | 642 | Protein_1159 | toxic metabolite efflux MATE transporter YeeO | - |
| C1P73_RS05985 () | 1047169..1048119 | - | 951 | WP_001010986.1 | HTH-type transcriptional regulator Cbl | - |
| C1P73_RS05990 () | 1048221..1049138 | - | 918 | WP_001011482.1 | nitrogen assimilation transcriptional regulator NAC | - |
| C1P73_RS06000 () | 1049597..1050532 | - | 936 | WP_134800685.1 | L,D-transpeptidase | - |
| C1P73_RS06005 () | 1050594..1051673 | - | 1080 | WP_001166156.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| C1P73_RS06010 () | 1051685..1052428 | - | 744 | WP_005042779.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| C1P73_RS06015 () | 1052425..1052970 | - | 546 | WP_000973150.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| C1P73_RS25435 () | 1053122..1053295 | - | 174 | Protein_1166 | cobalamin biosynthesis protein | - |
| C1P73_RS25440 () | 1053274..1053462 | - | 189 | Protein_1167 | IS4 family transposase | - |
| C1P73_RS06035 () | 1054839..1056067 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| C1P73_RS06045 () | 1056149..1057171 | + | 1023 | WP_000255950.1 | IS21 family transposase IS100kyp | Transposase |
| C1P73_RS06050 () | 1057168..1057644 | + | 477 | Protein_1171 | IS21 family transposase IS100 | Transposase |
| C1P73_RS06055 () | 1057699..1058912 | + | 1214 | WP_167544914.1 | IS3 family transposase IS629 | Transposase |
| C1P73_RS06060 () | 1058952..1059263 | + | 312 | Protein_1173 | IS21 family transposase IS100kyp | Transposase |
| C1P73_RS06070 () | 1059453..1059719 | + | 267 | WP_064717141.1 | EutP/PduV family microcompartment system protein | - |
| C1P73_RS06075 () | 1059820..1060149 | - | 330 | WP_000450409.1 | DUF496 family protein | - |
| C1P73_RS06080 () | 1060321..1061379 | - | 1059 | WP_001200876.1 | FUSC family protein | - |
| C1P73_RS06085 () | 1061577..1062050 | - | 474 | WP_001105385.1 | DNA gyrase inhibitor SbmC | - |
| C1P73_RS06090 () | 1062168..1063334 | - | 1167 | Protein_1178 | serine-type D-Ala-D-Ala carboxypeptidase DacD | - |
| C1P73_RS25025 () | 1063261..1063419 | + | 159 | WP_001302630.1 | hypothetical protein | - |
| C1P73_RS06095 () | 1063543..1064970 | + | 1428 | WP_000980542.1 | exodeoxyribonuclease I | - |
| C1P73_RS06100 () | 1065013..1065240 | - | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| C1P73_RS06105 () | 1065254..1066311 | - | 1058 | Protein_1182 | thiosulfate utilization transporter TsuA/YeeE | - |
| C1P73_RS06110 () | 1066490..1067848 | - | 1359 | WP_000019197.1 | putrescine/proton symporter PlaP | - |
| C1P73_RS06115 () | 1067838..1067900 | - | 63 | WP_010723108.1 | membrane protein YoeI | - |
| C1P73_RS06120 () | 1068115..1068267 | - | 153 | Protein_1185 | LysR family transcriptional regulator | - |
| C1P73_RS06125 () | 1069167..1069168 | - | 2 | WP_171765932.1 | IS3 family transposase IS2 | Transposase |
| C1P73_RS06130 () | 1069652..1070349 | + | 698 | WP_252988923.1 | IS1 family transposase IS1X2 | Transposase |
| C1P73_RS06135 () | 1070366..1071157 | - | 792 | Protein_1188 | LysR substrate-binding domain-containing protein | - |
| C1P73_RS06140 () | 1071203..1072027 | - | 825 | WP_000754737.1 | SDR family oxidoreductase | - |
| C1P73_RS06145 () | 1072110..1072364 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| C1P73_RS06150 () | 1072361..1072612 | - | 252 | WP_001259255.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| C1P73_RS06165 () | 1073082..1073981 | + | 900 | WP_000131769.1 | ATP phosphoribosyltransferase | - |
| C1P73_RS06170 () | 1073987..1075291 | + | 1305 | WP_001345878.1 | histidinol dehydrogenase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|