MGE detailed information
MGE type: Prophage MGE length: 42379 bp
Accession: NZ_CP026803 Location: 975751..1018129 Organism: Shigella flexneri strain 89-141 Replicon: chromosome
Accession: NZ_CP026803 Location: 975751..1018129 Organism: Shigella flexneri strain 89-141 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P88_RS04875 (972009) | 972009..972611 | + | 603 | WP_005075977.1 | lipopolysaccharide core heptose(II)-phosphate phosphatase Ais | - |
| C1P88_RS04880 (972650) | 972650..973075 | - | 426 | WP_001249889.1 | nucleoside triphosphatase NudI | - |
| C1P88_RS04885 (973354) | 973354..973896 | + | 543 | WP_000717009.1 | YfaZ family outer membrane protein | - |
| C1P88_RS04890 (973983) | 973983..975185 | + | 1203 | WP_000921659.1 | nicotinamide mononucleotide deamidase-related protein YfaY | - |
| C1P88_RS04895 (975249) | 975249..975710 | + | 462 | Protein_938 | aldolase/citrate lyase family protein | - |
| C1P88_RS04900 (975751) | 975751..975987 | - | 237 | Protein_939 | hypothetical protein | VF |
| C1P88_RS04905 (975991) | 975991..976890 | - | 900 | WP_000140526.1 | Recombination-promoting nuclease RpnA | VF |
| C1P88_RS04910 (977083) | 977083..978273 | - | 1191 | WP_134799659.1 | anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC | - |
| C1P88_RS04915 (978270) | 978270..979529 | - | 1260 | WP_001209897.1 | glycerol-3-phosphate dehydrogenase subunit GlpB | - |
| C1P88_RS04920 (979519) | 979519..981147 | - | 1629 | WP_000857257.1 | anaerobic glycerol-3-phosphate dehydrogenase subunit A | - |
| C1P88_RS04925 (981420) | 981420..982778 | + | 1359 | WP_000948706.1 | glycerol-3-phosphate transporter | - |
| C1P88_RS04930 (982783) | 982783..983859 | + | 1077 | WP_000768975.1 | glycerophosphodiester phosphodiesterase | - |
| C1P88_RS04935 (983901) | 983901..984143 | - | 243 | Protein_946 | LysR family transcriptional regulator | - |
| C1P88_RS25260 (984138) | 984138..984242 | + | 105 | Protein_947 | hypothetical protein | - |
| C1P88_RS04940 (984322) | 984322..984972 | + | 651 | WP_000301039.1 | lipopolysaccharide kinase InaA | - |
| C1P88_RS04945 (985026) | 985026..985280 | - | 255 | WP_000135039.1 | ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE | - |
| C1P88_RS04950 (985280) | 985280..986410 | - | 1131 | WP_000332036.1 | class Ia ribonucleoside-diphosphate reductase subunit beta | - |
| C1P88_RS25265 (986409) | 986409..986444 | + | 36 | WP_211180501.1 | protein YoaM | - |
| C1P88_RS04955 (986644) | 986644..988929 | - | 2286 | WP_001075180.1 | class 1a ribonucleoside-diphosphate reductase subunit alpha | - |
| C1P88_RS04975 (991120) | 991120..994706 | + | 3587 | Protein_954 | AIDA-I family autotransporter adhesin YfaL/EhaC | - |
| C1P88_RS04980 (994834) | 994834..995556 | - | 723 | WP_000990752.1 | bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase | - |
| C1P88_RS04985 (995703) | 995703..998330 | + | 2628 | WP_001281242.1 | DNA topoisomerase (ATP-hydrolyzing) subunit A | - |
| C1P88_RS04990 (998479) | 998479..1000167 | + | 1689 | WP_000012287.1 | DUF2138 domain-containing protein | - |
| C1P88_RS04995 (1000164) | 1000164..1000500 | + | 337 | Protein_958 | DUF1175 family protein | - |
| C1P88_RS05000 (1000513) | 1000513..1001859 | - | 1347 | WP_005076505.1 | IS4 family transposase IS4 | Transposase |
| C1P88_RS05005 (1001930) | 1001930..1002121 | - | 192 | Protein_960 | site-specific integrase | - |
| C1P88_RS05010 (1002196) | 1002196..1003364 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| C1P88_RS05015 (1003372) | 1003372..1003791 | - | 420 | Protein_962 | Rha family transcriptional regulator | - |
| C1P88_RS05020 (1003866) | 1003866..1004552 | - | 687 | WP_000218236.1 | P22AR C-terminal domain-containing protein | - |
| C1P88_RS05025 (1004871) | 1004871..1005200 | + | 330 | WP_024258354.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C1P88_RS05030 (1005190) | 1005190..1005498 | + | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| C1P88_RS05035 (1005540) | 1005540..1005716 | - | 177 | WP_001254255.1 | NinE family protein | - |
| C1P88_RS05040 (1005713) | 1005713..1006159 | - | 447 | WP_000811308.1 | recombination protein NinB | - |
| C1P88_RS05045 (1006116) | 1006116..1006412 | - | 297 | WP_000049341.1 | hypothetical protein | - |
| C1P88_RS25270 (1006423) | 1006423..1006518 | - | 96 | Protein_969 | hypothetical protein | - |
| C1P88_RS25275 (1007853) | 1007853..1007966 | + | 114 | Protein_971 | DUF4376 domain-containing protein | - |
| C1P88_RS05065 (1008146) | 1008146..1009909 | - | 1764 | WP_000801167.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| C1P88_RS05070 (1010001) | 1010001..1010087 | + | 87 | Protein_973 | transposase | - |
| C1P88_RS05075 (1010097) | 1010097..1010177 | - | 81 | Protein_974 | hypothetical protein | - |
| C1P88_RS05080 (1010388) | 1010388..1010477 | + | 90 | Protein_975 | DUF1175 family protein | - |
| C1P88_RS05085 (1010501) | 1010501..1012189 | + | 1689 | Protein_976 | MG2 domain-containing protein | - |
| C1P88_RS05090 (1012255) | 1012255..1013423 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| C1P88_RS05095 (1013420) | 1013420..1014979 | + | 1560 | WP_005075894.1 | alpha-2-macroglobulin family protein | - |
| C1P88_RS24805 (1014976) | 1014976..1015698 | + | 723 | WP_005075892.1 | hypothetical protein | - |
| C1P88_RS05100 (1015699) | 1015699..1017348 | + | 1650 | WP_001104543.1 | YfaQ family protein | - |
| C1P88_RS05105 (1017353) | 1017353..1018129 | + | 777 | WP_001225855.1 | YfaP family protein | - |
| C1P88_RS05110 (1018404) | 1018404..1021253 | + | 2850 | WP_000876013.1 | two-component system sensor histidine kinase RcsC | - |
| C1P88_RS05115 (1021453) | 1021453..1022103 | - | 651 | WP_001061917.1 | response regulator transcription factor RcsB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|