MGE detailed information
MGE type: Prophage MGE length: 56351 bp
Accession: NZ_CP026803 Location: 3019877..3076227 Organism: Shigella flexneri strain 89-141 Replicon: chromosome
Accession: NZ_CP026803 Location: 3019877..3076227 Organism: Shigella flexneri strain 89-141 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P88_RS25030 (3015107) | 3015107..3015310 | - | 204 | WP_023517632.1 | hypothetical protein | - |
| C1P88_RS15930 (3015388) | 3015388..3016482 | + | 1095 | WP_000413677.1 | D-alanine--D-alanine ligase | - |
| C1P88_RS15935 (3016506) | 3016506..3016718 | - | 213 | WP_001599861.1 | DUF2754 domain-containing protein | - |
| C1P88_RS15940 (3016978) | 3016978..3017286 | + | 309 | WP_000763148.1 | YaiY family protein | - |
| C1P88_RS15945 (3017345) | 3017345..3018439 | - | 1095 | WP_000092044.1 | surface-exposed outer membrane lipoprotein YaiW | - |
| C1P88_RS15950 (3018452) | 3018452..3019672 | - | 1221 | WP_005072807.1 | peptide antibiotic transporter SbmA | - |
| C1P88_RS15955 (3020024) | 3020024..3021181 | + | 1158 | WP_000830761.1 | D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH | - |
| C1P88_RS15960 (3021182) | 3021182..3021685 | - | 504 | WP_134799716.1 | helix-turn-helix domain-containing protein | - |
| C1P88_RS15965 (3021773) | 3021773..3022300 | - | 528 | Protein_3056 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| C1P88_RS15975 (3023531) | 3023531..3023776 | - | 246 | Protein_3058 | hypothetical protein | - |
| C1P88_RS15980 (3023859) | 3023859..3025087 | + | 1229 | WP_171763483.1 | IS3 family transposase IS2 | Transposase |
| C1P88_RS15985 (3025099) | 3025099..3025506 | - | 408 | Protein_3060 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| C1P88_RS15990 (3026033) | 3026033..3027007 | + | 975 | WP_001295337.1 | porphobilinogen synthase | - |
| C1P88_RS15995 (3027113) | 3027113..3027964 | - | 852 | WP_000004018.1 | taurine dioxygenase | - |
| C1P88_RS16000 (3027979) | 3027979..3028789 | - | 811 | Protein_3063 | taurine ABC transporter permease TauC | - |
| C1P88_RS16005 (3028786) | 3028786..3029553 | - | 768 | WP_000939365.1 | Taurine import ATP-binding protein TauB | VF |
| C1P88_RS16010 (3029566) | 3029566..3030492 | - | 927 | WP_044136799.1 | taurine ABC transporter substrate-binding protein | - |
| C1P88_RS16015 (3030759) | 3030759..3030962 | - | 204 | Protein_3066 | hypothetical protein | - |
| C1P88_RS16025 (3032207) | 3032207..3032755 | + | 549 | Protein_3068 | IS91 family transposase ISTha3 | Transposase |
| C1P88_RS16035 (3032960) | 3032960..3034213 | - | 1254 | WP_000893267.1 | glutamate-5-semialdehyde dehydrogenase | - |
| C1P88_RS16040 (3034225) | 3034225..3035328 | - | 1104 | WP_001285288.1 | glutamate 5-kinase | - |
| C1P88_RS16045 (3035616) | 3035616..3036672 | + | 1057 | Protein_3071 | Outer membrane pore protein E | VF |
| C1P88_RS16050 (3036711) | 3036711..3037112 | - | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| - (3037830) | 3037830..3037910 | - | 81 | NuclAT_8 | - | - |
| - (3037830) | 3037830..3037910 | - | 81 | NuclAT_8 | - | - |
| - (3037830) | 3037830..3037910 | - | 81 | NuclAT_8 | - | - |
| - (3037830) | 3037830..3037910 | - | 81 | NuclAT_8 | - | - |
| C1P88_RS16055 (3037170) | 3037170..3038414 | - | 1245 | WP_000189559.1 | esterase FrsA | - |
| C1P88_RS16060 (3038506) | 3038506..3038964 | - | 459 | WP_001291993.1 | xanthine phosphoribosyltransferase | - |
| C1P88_RS16065 (3039226) | 3039226..3040683 | + | 1458 | WP_001293009.1 | cytosol nonspecific dipeptidase | - |
| C1P88_RS16070 (3040740) | 3040740..3041300 | - | 561 | Protein_3076 | peptide chain release factor H | - |
| C1P88_RS16075 (3041416) | 3041416..3042459 | - | 1044 | WP_005072768.1 | RNA ligase RtcB family protein | - |
| C1P88_RS16080 (3042705) | 3042705..3043157 | - | 453 | WP_001059864.1 | GNAT family N-acetyltransferase | - |
| C1P88_RS16085 (3043167) | 3043167..3043565 | - | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| C1P88_RS16090 (3043568) | 3043568..3043861 | - | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| C1P88_RS16095 (3043913) | 3043913..3044968 | - | 1056 | WP_001226172.1 | DNA polymerase IV | - |
| C1P88_RS16100 (3045039) | 3045039..3045824 | - | 786 | WP_000207553.1 | Chemotaxis protein LafU | VF |
| C1P88_RS16105 (3045796) | 3045796..3047508 | + | 1713 | Protein_3083 | Flagellar biosynthesis protein FlhA | VF |
| C1P88_RS16110 (3047725) | 3047725..3048222 | - | 498 | WP_000006243.1 | transposase | - |
| C1P88_RS16115 (3048398) | 3048398..3048919 | - | 522 | Protein_3085 | Murein DD-endopeptidase MepH | VF |
| C1P88_RS16120 (3049303) | 3049303..3050043 | + | 741 | WP_001225676.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| C1P88_RS16125 (3050014) | 3050014..3050781 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| C1P88_RS16130 (3050987) | 3050987..3051565 | - | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| C1P88_RS16135 (3051805) | 3051805..3054248 | + | 2444 | Protein_3089 | Acyl-coenzyme A dehydrogenase | VF |
| C1P88_RS16145 (3054291) | 3054291..3054737 | - | 447 | WP_005100645.1 | Ivy family C-type lysozyme inhibitor | - |
| C1P88_RS16150 (3054918) | 3054918..3055688 | + | 771 | WP_001139559.1 | 2-oxoglutaramate amidase | - |
| C1P88_RS16155 (3055798) | 3055798..3056030 | + | 233 | Protein_3092 | type I toxin-antitoxin system SymE family toxin | - |
| C1P88_RS16165 (3056878) | 3056878..3057081 | - | 204 | WP_234426380.1 | hypothetical protein | - |
| C1P88_RS25525 (3057094) | 3057094..3059639 | - | 2546 | Protein_3095 | Protein ClpV1 | VF |
| C1P88_RS25530 (3061290) | 3061290..3061589 | + | 300 | WP_000804009.1 | FHA domain-containing protein | - |
| C1P88_RS25535 (3061641) | 3061641..3062204 | + | 564 | WP_234426353.1 | type VI secretion system-associated protein TagK | - |
| C1P88_RS16185 (3062191) | 3062191..3063021 | + | 831 | WP_000183808.1 | hypothetical protein | VF |
| C1P88_RS16190 (3063018) | 3063018..3063512 | + | 495 | WP_001276640.1 | hypothetical protein | VF |
| C1P88_RS16195 (3063528) | 3063528..3065390 | + | 1863 | WP_000371483.1 | type VI secretion system baseplate subunit TssF | - |
| C1P88_RS16200 (3065387) | 3065387..3066382 | + | 996 | WP_000063808.1 | hypothetical protein | VF |
| C1P88_RS16205 (3066393) | 3066393..3067439 | + | 1047 | WP_000402245.1 | hypothetical protein | VF |
| C1P88_RS16215 (3067779) | 3067779..3068510 | - | 732 | WP_001366128.1 | DNA polymerase III subunit epsilon | - |
| C1P88_RS16220 (3068575) | 3068575..3069042 | + | 468 | WP_000917883.1 | ribonuclease HI | - |
| C1P88_RS16225 (3069039) | 3069039..3069761 | - | 723 | WP_005072734.1 | class I SAM-dependent methyltransferase | - |
| C1P88_RS16230 (3069795) | 3069795..3070550 | + | 756 | WP_001052755.1 | hydroxyacylglutathione hydrolase | - |
| C1P88_RS16235 (3070622) | 3070622..3071980 | + | 1359 | WP_134799718.1 | Membrane-bound lytic murein transglycosylase D | VF |
| C1P88_RS16240 (3072028) | 3072028..3072798 | - | 771 | WP_000211684.1 | class I SAM-dependent methyltransferase | - |
| C1P88_RS16245 (3072876) | 3072876..3073676 | - | 801 | WP_001230983.1 | endonuclease/exonuclease/phosphatase family protein | - |
| C1P88_RS16250 (3073917) | 3073917..3074831 | + | 915 | WP_000648578.1 | HTH-type transcriptional regulator DmlR | VF |
| C1P88_RS16255 (3074881) | 3074881..3076227 | + | 1347 | WP_005072727.1 | IS4 family transposase IS4 | Transposase |
| C1P88_RS16260 (3076266) | 3076266..3077069 | - | 804 | WP_000997035.1 | 2,5-didehydrogluconate reductase DkgB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|