MGE detailed information
MGE type: Prophage MGE length: 28005 bp
Accession: NZ_CP026802 Location: 1623485..1651489 Organism: Shigella sonnei strain ATCC 29930 Replicon: chromosome
Accession: NZ_CP026802 Location: 1623485..1651489 Organism: Shigella sonnei strain ATCC 29930 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P89_RS08645 () | 1619214..1621847 | + | 2634 | WP_005138565.1 | lipid-binding membrane homeostasis protein YebT | - |
| C1P89_RS08650 () | 1621928..1623367 | + | 1440 | WP_005138560.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C1P89_RS25900 () | 1623485..1623568 | + | 84 | Protein_1658 | DUF1480 family protein | - |
| C1P89_RS08660 () | 1624340..1624498 | + | 159 | Protein_1660 | DUF1480 family protein | - |
| C1P89_RS08665 () | 1624603..1624794 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C1P89_RS08670 () | 1624795..1624995 | - | 201 | Protein_1662 | serine/threonine-protein phosphatase | - |
| C1P89_RS08680 () | 1626251..1626556 | - | 306 | Protein_1664 | serine/threonine-protein phosphatase | - |
| C1P89_RS08685 () | 1626611..1627308 | + | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| C1P89_RS08690 () | 1627322..1627495 | - | 174 | Protein_1666 | metallophosphoesterase | - |
| C1P89_RS08700 () | 1628146..1629302 | + | 1157 | WP_085948186.1 | IS3 family transposase ISSd1 | Transposase |
| C1P89_RS08705 () | 1629513..1631219 | + | 1707 | WP_000936825.1 | Universal stress protein | VF |
| C1P89_RS08725 () | 1632739..1633059 | + | 321 | WP_241556168.1 | exodeoxyribonuclease VIII | - |
| C1P89_RS08730 () | 1633037..1633153 | + | 117 | Protein_1671 | host-nuclease inhibitor Gam family protein | - |
| C1P89_RS08735 () | 1633216..1634372 | + | 1157 | WP_087879964.1 | IS3 family transposase IS600 | Transposase |
| C1P89_RS08745 () | 1634418..1634600 | + | 183 | Protein_1673 | host-nuclease inhibitor Gam family protein | - |
| C1P89_RS08750 () | 1634606..1635703 | + | 1098 | WP_001173292.1 | AAA family ATPase | - |
| C1P89_RS08755 () | 1635754..1635942 | + | 189 | WP_000276803.1 | DUF1187 family protein | - |
| - () | 1635760..1635938 | - | 179 | NuclAT_2 | - | - |
| - () | 1635760..1635938 | - | 179 | NuclAT_2 | - | - |
| - () | 1635760..1635938 | - | 179 | NuclAT_2 | - | - |
| - () | 1635760..1635938 | - | 179 | NuclAT_2 | - | - |
| C1P89_RS08760 () | 1636049..1636309 | + | 261 | WP_077447296.1 | excisionase | - |
| C1P89_RS08765 () | 1636338..1637035 | + | 698 | WP_229318984.1 | IS1-like element IS1A family transposase | - |
| C1P89_RS08770 () | 1637072..1638148 | + | 1077 | WP_001189101.1 | PE-PGRS family protein PE_PGRS16 ; Integrase | Integrase |
| - | 1638279..1638513 | + | 235 | - | - | Antitoxin Detail |
| - | 1638280..1638383 | - | 104 | - | - | Toxin Detail |
| C1P89_RS08775 () | 1638541..1638882 | - | 342 | WP_000976476.1 | YebY family protein | - |
| C1P89_RS08780 () | 1638895..1639767 | - | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| C1P89_RS08785 () | 1639771..1640145 | - | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| C1P89_RS08790 () | 1640284..1640514 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C1P89_RS08795 () | 1640616..1641272 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| C1P89_RS08800 () | 1641296..1641958 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C1P89_RS08805 () | 1641955..1644015 | - | 2061 | WP_000936913.1 | oligopeptidase B | - |
| C1P89_RS08810 () | 1644224..1644883 | - | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| C1P89_RS08815 () | 1645210..1645566 | - | 357 | WP_001295500.1 | protein YebF | - |
| C1P89_RS08820 () | 1645633..1645923 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| C1P89_RS08825 () | 1646057..1647235 | + | 1179 | WP_000173484.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| C1P89_RS08830 () | 1647291..1647932 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| C1P89_RS08835 () | 1647969..1649780 | - | 1812 | WP_001069438.1 | phosphogluconate dehydratase | - |
| C1P89_RS08840 () | 1650015..1651489 | - | 1475 | Protein_1692 | glucose-6-phosphate dehydrogenase | - |
| C1P89_RS08845 () | 1651827..1652696 | + | 870 | WP_001056706.1 | DNA-binding transcriptional regulator HexR | - |
| C1P89_RS08850 () | 1652824..1654266 | + | 1443 | WP_000091148.1 | pyruvate kinase | - |
| C1P89_RS08855 () | 1654326..1655168 | - | 843 | WP_000546442.1 | Nif3-like dinuclear metal center hexameric protein | - |
| C1P89_RS08865 () | 1656108..1656347 | + | 240 | WP_000961944.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|