MGE detailed information
MGE type: Prophage MGE length: 71137 bp
Accession: NZ_CP026799 Location: 1737648..1808784 Organism: Shigella flexneri strain NCTC 9728 Replicon: chromosome
Accession: NZ_CP026799 Location: 1737648..1808784 Organism: Shigella flexneri strain NCTC 9728 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P82_RS08855 () | 1734020..1734574 | + | 555 | WP_134807615.1 | hypothetical protein | - |
| C1P82_RS08860 () | 1734576..1734863 | + | 288 | WP_000790883.1 | hypothetical protein | - |
| C1P82_RS08865 () | 1734863..1735078 | + | 216 | WP_000882845.1 | hypothetical protein | - |
| C1P82_RS08870 () | 1735075..1735362 | + | 288 | WP_000805963.1 | HNH endonuclease | - |
| C1P82_RS08875 () | 1735520..1735828 | + | 309 | WP_001067391.1 | hypothetical protein | - |
| C1P82_RS08880 () | 1736375..1737085 | + | 711 | WP_134800560.1 | transposase | - |
| C1P82_RS08885 () | 1737109..1737318 | + | 210 | WP_001774388.1 | hypothetical protein | - |
| C1P82_RS08890 () | 1737555..1739594 | + | 2040 | WP_024260360.1 | tape measure protein | - |
| C1P82_RS08895 () | 1739691..1740464 | + | 774 | WP_000460599.1 | hypothetical protein | - |
| C1P82_RS24315 () | 1740516..1740842 | + | 327 | WP_201797288.1 | IS3 family transposase IS1203 | Transposase |
| C1P82_RS24320 () | 1741001..1741524 | + | 524 | Protein_1695 | IS3 family transposase IS629 | Transposase |
| C1P82_RS24105 () | 1742794..1742931 | + | 138 | Protein_1697 | hypothetical protein | - |
| C1P82_RS08910 () | 1742931..1743290 | + | 360 | WP_001215517.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C1P82_RS08915 () | 1743287..1743976 | + | 690 | WP_001064885.1 | hypothetical protein | VF |
| C1P82_RS08945 () | 1745160..1746356 | - | 1197 | WP_005107451.1 | IS110 family transposase ISSfl4 | Transposase |
| C1P82_RS08950 () | 1746620..1747021 | + | 402 | WP_001074424.1 | hypothetical protein | - |
| C1P82_RS08955 () | 1747033..1747404 | + | 372 | WP_000753026.1 | tail attachment protein | - |
| C1P82_RS08960 () | 1747391..1747981 | + | 591 | WP_000677116.1 | phage tail protein | - |
| C1P82_RS08965 () | 1747978..1748379 | + | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| C1P82_RS08970 () | 1748390..1749130 | + | 741 | WP_000211137.1 | Ig-like domain-containing protein | - |
| C1P82_RS08975 () | 1749189..1749575 | + | 387 | WP_000478927.1 | phage minor tail protein G | - |
| C1P82_RS08980 () | 1749584..1749913 | + | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| C1P82_RS08985 () | 1749885..1752927 | + | 3043 | Protein_1708 | phage tail tape measure protein | - |
| C1P82_RS24325 () | 1752927..1753175 | + | 249 | Protein_1709 | phage tail protein | - |
| C1P82_RS08990 () | 1753170..1753868 | + | 699 | WP_001152490.1 | phage minor tail protein L | - |
| C1P82_RS08995 () | 1753873..1754616 | + | 744 | WP_000194737.1 | C40 family peptidase | - |
| C1P82_RS09000 () | 1754562..1755155 | + | 594 | WP_165850933.1 | tail assembly protein | - |
| C1P82_RS09005 () | 1755216..1758695 | + | 3480 | WP_000515521.1 | host specificity protein J | - |
| C1P82_RS09010 () | 1758763..1759362 | + | 600 | WP_001230369.1 | hypothetical protein | VF |
| C1P82_RS09015 () | 1759426..1760841 | + | 1416 | WP_000268794.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C1P82_RS09020 () | 1760792..1761415 | + | 624 | WP_134807585.1 | DUF4376 domain-containing protein | - |
| C1P82_RS09025 () | 1761594..1763344 | - | 1751 | Protein_1717 | hypothetical protein | VF |
| C1P82_RS09035 () | 1763944..1764192 | - | 249 | WP_001210039.1 | DinI-like family protein | - |
| C1P82_RS09040 () | 1764547..1764894 | - | 348 | Protein_1719 | hydrolase | - |
| C1P82_RS09045 () | 1764921..1766117 | - | 1197 | WP_005107451.1 | IS110 family transposase ISSfl4 | Transposase |
| C1P82_RS09050 () | 1766309..1766563 | - | 255 | WP_000891627.1 | isochorismatase family protein | - |
| C1P82_RS09055 () | 1766873..1768645 | + | 1773 | WP_001258679.1 | aspartate--tRNA ligase | - |
| C1P82_RS09060 () | 1768763..1769215 | + | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| C1P82_RS09065 () | 1769244..1769984 | + | 741 | WP_000907248.1 | transcriptional regulatory protein YebC | VF |
| C1P82_RS09070 () | 1770019..1770540 | + | 522 | WP_000974712.1 | crossover junction endodeoxyribonuclease RuvC | - |
| C1P82_RS09075 () | 1770542..1771144 | - | 603 | WP_001024930.1 | YebB family permuted papain-like enzyme | - |
| C1P82_RS09080 () | 1771214..1771279 | + | 66 | WP_001386853.1 | stress response small protein YobI | - |
| C1P82_RS09085 () | 1771418..1772029 | + | 612 | WP_000580324.1 | Holliday junction branch migration protein RuvA | - |
| C1P82_RS09090 () | 1772038..1773048 | + | 1011 | WP_000568525.1 | Holliday junction branch migration DNA helicase RuvB | - |
| C1P82_RS09095 () | 1773195..1773980 | - | 786 | WP_000571470.1 | hypothetical protein | VF |
| C1P82_RS09100 () | 1773977..1774732 | - | 756 | WP_000202992.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| C1P82_RS09105 () | 1774811..1775743 | + | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| C1P82_RS09110 () | 1775759..1777081 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| C1P82_RS09115 () | 1777201..1778172 | + | 972 | WP_000448385.1 | Lipid A biosynthesis myristoyltransferase | VF |
| C1P82_RS09120 () | 1778303..1779745 | - | 1443 | WP_000044415.1 | pyruvate kinase | - |
| C1P82_RS09125 () | 1779873..1780742 | - | 870 | WP_001056703.1 | DNA-binding transcriptional regulator HexR | - |
| C1P82_RS09130 () | 1781079..1782554 | + | 1476 | WP_000301736.1 | glucose-6-phosphate dehydrogenase | - |
| C1P82_RS09135 () | 1782789..1784600 | + | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| C1P82_RS09140 () | 1784637..1785278 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| C1P82_RS09145 () | 1785334..1786512 | - | 1179 | WP_000173488.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| C1P82_RS09150 () | 1786646..1786936 | + | 291 | Protein_1741 | DNA damage-inducible protein YebG | - |
| C1P82_RS09155 () | 1787003..1787359 | + | 357 | WP_005062375.1 | protein YebF | - |
| C1P82_RS09160 () | 1787686..1788345 | + | 660 | WP_000024752.1 | tellurite resistance TerB family protein | - |
| C1P82_RS09165 () | 1788554..1790614 | + | 2061 | WP_000936980.1 | oligopeptidase B | - |
| C1P82_RS09170 () | 1790611..1791273 | - | 663 | WP_000944267.1 | exodeoxyribonuclease X | - |
| C1P82_RS09175 () | 1791297..1791953 | - | 657 | Protein_1746 | carbon-nitrogen hydrolase family protein | - |
| C1P82_RS09180 () | 1792055..1792285 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C1P82_RS09185 () | 1792424..1792798 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C1P82_RS09190 () | 1792802..1793673 | + | 872 | Protein_1749 | copper homeostasis membrane protein CopD | - |
| C1P82_RS09195 () | 1793686..1794027 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - () | 1794055..1794289 | - | 235 | - | - | Antitoxin Detail |
| - () | 1794185..1794288 | + | 104 | - | - | Toxin Detail |
| C1P82_RS09200 () | 1794420..1795496 | - | 1077 | WP_001189100.1 | hypothetical protein ; Integrase | Integrase |
| C1P82_RS09205 () | 1795462..1795743 | - | 282 | WP_134807616.1 | excisionase | - |
| C1P82_RS09210 () | 1795860..1797016 | - | 1157 | Protein_1753 | IS3 family transposase IS600 | Transposase |
| C1P82_RS09215 () | 1797117..1797305 | - | 189 | WP_000276807.1 | DUF1187 family protein | - |
| - () | 1797121..1797299 | + | 179 | NuclAT_0 | - | - |
| - () | 1797121..1797299 | + | 179 | NuclAT_0 | - | - |
| - () | 1797121..1797299 | + | 179 | NuclAT_0 | - | - |
| - () | 1797121..1797299 | + | 179 | NuclAT_0 | - | - |
| C1P82_RS09220 () | 1797356..1798453 | - | 1098 | WP_001173296.1 | AAA family ATPase | - |
| C1P82_RS09225 () | 1798483..1798755 | - | 273 | WP_001277358.1 | host-nuclease inhibitor protein Gam | - |
| C1P82_RS24110 () | 1798733..1799155 | - | 423 | WP_001249968.1 | hypothetical protein | - |
| C1P82_RS09235 () | 1799703..1800551 | - | 849 | Protein_1758 | IS3 family transposase ISSd1 | Transposase |
| C1P82_RS09240 () | 1800606..1801815 | + | 1210 | Protein_1759 | IS3 family transposase IS629 | Transposase |
| C1P82_RS09245 () | 1801858..1802168 | - | 311 | Protein_1760 | IS3 family transposase ISSfl10 | Transposase |
| C1P82_RS09250 () | 1802232..1802699 | + | 468 | Protein_1761 | DNA-binding transcriptional regulator PgrR | - |
| C1P82_RS09255 () | 1803036..1804649 | + | 1614 | WP_000682988.1 | murein tripeptide ABC transporter substrate-binding protein MppA | - |
| C1P82_RS09260 () | 1804700..1805731 | - | 1032 | WP_000559908.1 | low conductance mechanosensitive channel YnaI | - |
| C1P82_RS09265 () | 1805859..1806223 | + | 365 | Protein_1764 | IS3 family transposase IS911 | Transposase |
| C1P82_RS09270 () | 1806335..1807522 | - | 1188 | WP_134807731.1 | IS91 family transposase ISEc37 | Transposase |
| C1P82_RS09275 () | 1807522..1807887 | - | 366 | WP_000124119.1 | hypothetical protein | - |
| C1P82_RS09280 () | 1807978..1808784 | + | 807 | Protein_1767 | IS3 family transposase ISLad1 | Transposase |
| C1P82_RS09285 () | 1808984..1809241 | + | 258 | Protein_1768 | DUF2534 family protein | - |
| C1P82_RS09290 () | 1809291..1810241 | - | 951 | WP_001262123.1 | universal stress protein UspE | - |
| C1P82_RS09295 () | 1810393..1811145 | - | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| C1P82_RS09300 () | 1811340..1811855 | - | 516 | WP_000945011.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| C1P82_RS09305 () | 1811866..1812009 | - | 144 | Protein_1772 | AbgT family transporter | - |
| C1P82_RS09310 () | 1812399..1813214 | - | 816 | WP_000156575.1 | helix-turn-helix transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|