MGE detailed information
MGE type: Prophage MGE length: 96623 bp
Accession: NZ_CP026795 Location: 2276162..2372784 Organism: Shigella boydii strain ATCC BAA-1247 Replicon: chromosome
Accession: NZ_CP026795 Location: 2276162..2372784 Organism: Shigella boydii strain ATCC BAA-1247 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5B80_RS12080 () | 2272067..2272480 | - | 414 | WP_000920122.1 | hydroxyisourate hydrolase | - |
| C5B80_RS12085 () | 2272613..2273284 | + | 672 | WP_001339045.1 | response regulator transcription factor HprR | - |
| C5B80_RS12090 () | 2273284..2274641 | + | 1358 | Protein_2315 | two-component system sensor histidine kinase HprS | - |
| C5B80_RS12095 () | 2274749..2275600 | - | 852 | WP_000218214.1 | protein deglycase HchA | - |
| C5B80_RS12105 () | 2276162..2276859 | - | 698 | Protein_2317 | IS1 family transposase IS1X2 | Transposase |
| C5B80_RS12110 () | 2276969..2277466 | - | 498 | Protein_2318 | porin | - |
| C5B80_RS12115 () | 2277560..2278788 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| C5B80_RS12120 () | 2278800..2279306 | - | 507 | Protein_2320 | porin | - |
| C5B80_RS12125 () | 2279321..2280018 | - | 698 | Protein_2321 | IS1 family transposase IS1R | Transposase |
| C5B80_RS12130 () | 2280722..2281087 | + | 366 | WP_073692924.1 | permease | - |
| C5B80_RS12135 () | 2281127..2281822 | + | 696 | WP_000365568.1 | phosphohydrolase | - |
| C5B80_RS12140 () | 2281889..2283307 | + | 1419 | WP_001157236.1 | DNA-cytosine methyltransferase | - |
| C5B80_RS12145 () | 2283288..2283758 | + | 471 | WP_000786008.1 | VSPR family DNA mismatch endonuclease | - |
| C5B80_RS12150 () | 2283747..2284667 | - | 921 | WP_001212248.1 | drug/metabolite exporter YedA | - |
| C5B80_RS12155 () | 2284813..2285509 | - | 697 | Protein_2327 | IS1 family transposase | - |
| C5B80_RS12160 () | 2285543..2285899 | - | 357 | WP_005113720.1 | hypothetical protein | - |
| C5B80_RS12165 () | 2285965..2286309 | - | 345 | WP_000133375.1 | DUF3168 domain-containing protein | - |
| C5B80_RS12170 () | 2286306..2286752 | - | 447 | WP_000569978.1 | HK97 gp10 family phage protein | - |
| C5B80_RS12175 () | 2286749..2287099 | - | 351 | WP_001007905.1 | phage head closure protein | - |
| C5B80_RS12180 () | 2287109..2287435 | - | 327 | WP_000125994.1 | head-tail connector protein | - |
| C5B80_RS12185 () | 2287432..2289752 | - | 2321 | Protein_2333 | phage portal protein | - |
| C5B80_RS12190 () | 2289698..2289919 | - | 222 | WP_001063101.1 | hypothetical protein | - |
| C5B80_RS12195 () | 2289964..2291355 | - | 1392 | Protein_2335 | phage major capsid protein | - |
| C5B80_RS12200 () | 2291413..2292110 | + | 698 | Protein_2336 | IS1 family transposase IS1R | Transposase |
| C5B80_RS12205 () | 2292121..2292482 | - | 362 | Protein_2337 | HK97 family phage prohead protease | - |
| C5B80_RS12210 () | 2292741..2294402 | - | 1662 | WP_134810332.1 | terminase large subunit | - |
| C5B80_RS12215 () | 2294399..2294962 | - | 564 | WP_001530008.1 | terminase small subunit | - |
| C5B80_RS12220 () | 2295253..2295618 | - | 366 | WP_039059168.1 | HNH endonuclease | - |
| C5B80_RS12225 () | 2295660..2295860 | + | 201 | WP_000095744.1 | YlcI/YnfO family protein | - |
| C5B80_RS12230 () | 2295992..2296318 | - | 327 | WP_000828072.1 | TonB family protein | - |
| C5B80_RS25995 () | 2296657..2297124 | - | 468 | WP_001082565.1 | lysis protein | - |
| C5B80_RS12250 () | 2297126..2297239 | - | 114 | WP_000675931.1 | hypothetical protein | - |
| C5B80_RS12255 () | 2297460..2297993 | - | 534 | WP_000992061.1 | lysozyme | - |
| C5B80_RS12260 () | 2298099..2298371 | + | 273 | WP_000369850.1 | hypothetical protein | - |
| C5B80_RS12265 () | 2298337..2298681 | - | 345 | WP_000193278.1 | YdfR family protein | - |
| C5B80_RS12275 () | 2298816..2299046 | + | 231 | Protein_2348 | IS3 family transposase IS911 | Transposase |
| C5B80_RS12280 () | 2299101..2299798 | + | 698 | Protein_2349 | IS1 family transposase IS1R | Transposase |
| C5B80_RS12285 () | 2299811..2299966 | + | 156 | Protein_2350 | IS3 family transposase | - |
| C5B80_RS12290 () | 2300009..2300842 | + | 834 | Protein_2351 | alpha-mannosidase | - |
| C5B80_RS12295 () | 2300931..2301902 | - | 972 | WP_000425295.1 | Lipid A biosynthesis myristoyltransferase | VF |
| C5B80_RS12300 () | 2302022..2303344 | - | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| C5B80_RS12305 () | 2303360..2304292 | - | 933 | WP_004983046.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| C5B80_RS12310 () | 2304371..2305126 | + | 756 | WP_000203000.1 | HTH-type transcriptional regulator SarZ | VF |
| C5B80_RS12315 () | 2305123..2305908 | + | 786 | WP_000571464.1 | Acid shock protein | VF |
| C5B80_RS12320 () | 2305958..2306968 | - | 1011 | WP_000568512.1 | Holliday junction branch migration DNA helicase RuvB | - |
| C5B80_RS12325 () | 2306977..2307588 | - | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| C5B80_RS12330 () | 2307727..2307792 | - | 66 | WP_001386853.1 | stress response small protein YobI | - |
| C5B80_RS12335 () | 2307881..2308578 | - | 698 | Protein_2360 | IS1 family transposase IS1R | Transposase |
| C5B80_RS12340 () | 2308633..2308800 | + | 168 | Protein_2361 | IS1 family transposase | - |
| C5B80_RS12355 () | 2309549..2310094 | + | 546 | WP_000973176.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| C5B80_RS12360 () | 2310091..2310834 | + | 744 | WP_001297350.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| C5B80_RS12365 () | 2310846..2311931 | + | 1086 | WP_001193778.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| C5B80_RS12370 () | 2311993..2312928 | + | 936 | WP_000986308.1 | L,D-transpeptidase | - |
| C5B80_RS12380 () | 2313386..2314327 | + | 942 | WP_134810333.1 | nitrogen assimilation transcriptional regulator NAC | - |
| C5B80_RS12385 () | 2314429..2315379 | + | 951 | WP_001010992.1 | HTH-type transcriptional regulator Cbl | - |
| C5B80_RS12390 () | 2315721..2316269 | - | 549 | WP_001370556.1 | sel1 repeat family protein | - |
| C5B80_RS12395 () | 2316326..2320492 | - | 4167 | Protein_2369 | Uroporphyrinogen-III C-methyltransferase | VF |
| C5B80_RS12400 () | 2320627..2321324 | - | 698 | Protein_2370 | IS1 family transposase IS1X2 | Transposase |
| C5B80_RS12420 () | 2322313..2323575 | - | 1263 | WP_039059174.1 | Sirohydrochlorin ferrochelatase ; Integrase | Integrase |
| C5B80_RS12430 () | 2323817..2325460 | + | 1644 | Protein_2372 | toxic metabolite efflux MATE transporter YeeO | - |
| C5B80_RS12440 () | 2326091..2326807 | - | 717 | WP_000532912.1 | Nitrite transporter NirC | VF |
| C5B80_RS12445 () | 2327150..2328582 | - | 1433 | Protein_2374 | AMP nucleosidase | - |
| C5B80_RS12460 () | 2330041..2330976 | - | 936 | Protein_2376 | shikimate transporter | - |
| C5B80_RS12465 () | 2331031..2332244 | + | 1214 | WP_164997312.1 | IS3 family transposase IS629 | Transposase |
| C5B80_RS12470 () | 2332285..2332671 | - | 387 | Protein_2378 | MFS transporter | - |
| C5B80_RS12475 () | 2332986..2334028 | + | 1043 | Protein_2379 | glycosyltransferase family 9 protein | - |
| C5B80_RS12480 () | 2334290..2334694 | - | 405 | WP_201797324.1 | hypothetical protein | - |
| C5B80_RS12485 () | 2334866..2335246 | + | 381 | WP_001333468.1 | IS66 family transposase ISEc8 | Transposase |
| C5B80_RS12490 () | 2335243..2335590 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| C5B80_RS12495 () | 2335639..2337177 | + | 1539 | WP_000099170.1 | IS66 family transposase ISEc22 | Transposase |
| C5B80_RS12510 () | 2338817..2342743 | - | 3927 | Protein_2385 | Ig-like domain-containing protein | - |
| C5B80_RS12515 () | 2342815..2346034 | - | 3220 | Protein_2386 | inverse autotransporter adhesin YeeJ | - |
| C5B80_RS12525 () | 2346524..2347321 | - | 798 | WP_001302302.1 | DgsA anti-repressor MtfA | - |
| C5B80_RS12535 () | 2347532..2347987 | - | 456 | WP_114142313.1 | Gamma-hemolysin component C ; Integrase | Integrase |
| C5B80_RS12540 () | 2348037..2348734 | + | 698 | Protein_2389 | IS1 family transposase IS1X2 | Transposase |
| C5B80_RS12545 () | 2348684..2348989 | - | 306 | Protein_2390 | hypothetical protein | - |
| C5B80_RS12550 () | 2349056..2350212 | + | 1157 | WP_134796775.1 | IS3 family transposase IS600 | Transposase |
| C5B80_RS12560 () | 2350256..2350555 | - | 300 | Protein_2392 | DUF968 domain-containing protein | - |
| C5B80_RS12565 () | 2350595..2352133 | - | 1539 | WP_000099170.1 | IS66 family transposase ISEc22 | Transposase |
| C5B80_RS12570 () | 2352182..2352529 | - | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| C5B80_RS12575 () | 2352526..2352906 | - | 381 | WP_001333468.1 | IS66 family transposase ISEc8 | Transposase |
| C5B80_RS12585 () | 2352999..2353460 | - | 462 | Protein_2396 | hypothetical protein | - |
| C5B80_RS12590 () | 2353462..2353740 | - | 279 | WP_000929754.1 | hypothetical protein | - |
| - () | 2353908..2354063 | - | 156 | - | - | Toxin Detail |
| C5B80_RS12600 () | 2353908..2354063 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - () | 2354075..2354133 | + | 59 | - | - | Antitoxin Detail |
| - () | 2354075..2354133 | + | 59 | - | - | Antitoxin Detail |
| C5B80_RS12615 () | 2354715..2355157 | - | 443 | Protein_2399 | hypothetical protein | - |
| C5B80_RS12620 () | 2355201..2355581 | + | 381 | WP_001333468.1 | IS66 family transposase ISEc8 | Transposase |
| C5B80_RS12625 () | 2355578..2355925 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| C5B80_RS12630 () | 2355974..2357512 | + | 1539 | WP_134802545.1 | IS66 family transposase ISEc22 | Transposase |
| C5B80_RS12635 () | 2357509..2357868 | + | 360 | WP_073692993.1 | 3'-5' exoribonuclease | - |
| C5B80_RS12640 () | 2357927..2358130 | + | 204 | WP_000096344.1 | DUF4224 domain-containing protein | - |
| C5B80_RS12645 () | 2358130..2358485 | + | 356 | Protein_2405 | integrase | - |
| C5B80_RS12655 () | 2359926..2360516 | + | 591 | WP_000377820.1 | DUF2313 domain-containing protein | - |
| C5B80_RS26000 () | 2360503..2361170 | + | 668 | Protein_2408 | phage tail protein | - |
| C5B80_RS26005 () | 2361191..2361712 | + | 522 | WP_165850228.1 | hypothetical protein | - |
| C5B80_RS12665 () | 2361715..2362260 | + | 546 | WP_000902895.1 | tail fiber assembly protein | - |
| C5B80_RS12670 () | 2362284..2363342 | + | 1059 | WP_119180387.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C5B80_RS12675 () | 2363293..2363916 | + | 624 | WP_000930154.1 | DUF4376 domain-containing protein | - |
| C5B80_RS26010 () | 2363916..2364095 | + | 180 | WP_001039895.1 | hypothetical protein | - |
| C5B80_RS12685 () | 2364096..2365739 | - | 1644 | WP_005136793.1 | Carnitine transport ATP-binding protein OpuCA | VF |
| C5B80_RS12690 () | 2366055..2366723 | - | 669 | WP_000239869.1 | class I SAM-dependent methyltransferase | - |
| C5B80_RS12695 () | 2366780..2367049 | + | 270 | WP_000937487.1 | tail fiber assembly protein | - |
| C5B80_RS12710 () | 2368440..2369330 | - | 891 | Protein_2418 | trehalose-6-phosphate synthase | - |
| C5B80_RS12715 () | 2369305..2370102 | - | 798 | WP_000138775.1 | trehalose-phosphatase | - |
| C5B80_RS12720 () | 2370269..2371255 | - | 987 | WP_000100203.1 | arabinose ABC transporter permease AraH | - |
| C5B80_RS12725 () | 2371270..2372784 | - | 1515 | WP_001187803.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| C5B80_RS12730 () | 2372854..2373843 | - | 990 | WP_005026642.1 | arabinose ABC transporter substrate-binding protein AraF | - |
| C5B80_RS12735 () | 2374557..2375060 | + | 504 | WP_000179469.1 | non-heme ferritin-like protein | - |
| C5B80_RS12740 () | 2375139..2375390 | - | 252 | WP_000082117.1 | DUF2766 domain-containing protein | - |
| C5B80_RS12745 () | 2375505..2375591 | - | 87 | WP_010723106.1 | stress response protein AzuC | - |
| C5B80_RS12755 () | 2375854..2376177 | + | 324 | WP_001237866.1 | YecR-like lipofamily protein | - |
| C5B80_RS12760 () | 2376348..2376845 | + | 498 | WP_004983027.1 | non-heme ferritin | - |
| C5B80_RS12765 () | 2376883..2377122 | - | 240 | WP_000377225.1 | YecH family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|