MGE detailed information
MGE type: Prophage MGE length: 65389 bp
Accession: NZ_CP026793 Location: 4010650..4076038 Organism: Shigella flexneri strain 74-1170 Replicon: chromosome
Accession: NZ_CP026793 Location: 4010650..4076038 Organism: Shigella flexneri strain 74-1170 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P81_RS20225 () | 4006554..4007192 | - | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| C1P81_RS20230 () | 4007210..4007791 | - | 582 | Protein_3883 | alpha/beta hydrolase | - |
| C1P81_RS20235 () | 4008020..4009216 | + | 1197 | WP_005084161.1 | IS110-like element ISEc20 family transposase | - |
| C1P81_RS26430 () | 4009233..4009592 | - | 360 | Protein_3885 | alpha/beta hydrolase | - |
| C1P81_RS20245 () | 4009592..4010512 | - | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| C1P81_RS20250 () | 4010650..4011084 | + | 435 | Protein_3887 | DNA-binding transcriptional regulator PgrR | - |
| C1P81_RS20260 () | 4012389..4012799 | + | 411 | Protein_3889 | YdaU family protein | - |
| C1P81_RS26975 () | 4014565..4014734 | + | 170 | Protein_3891 | hypothetical protein | - |
| C1P81_RS20275 () | 4014880..4015626 | + | 747 | WP_000788996.1 | ATP-binding protein | - |
| C1P81_RS20280 () | 4015641..4016063 | + | 423 | WP_001118168.1 | DUF977 family protein | - |
| C1P81_RS20285 () | 4016121..4016477 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| C1P81_RS20290 () | 4016570..4016788 | + | 219 | WP_000256998.1 | DUF4014 family protein | - |
| C1P81_RS20295 () | 4016790..4017155 | + | 366 | WP_001229298.1 | HNH endonuclease signature motif containing protein | - |
| C1P81_RS20300 () | 4017152..4017817 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| C1P81_RS20305 () | 4017817..4018182 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - | 4018567..4018625 | - | 59 | - | - | Antitoxin Detail |
| C1P81_RS20310 () | 4018637..4018792 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| C1P81_RS20325 () | 4020129..4020728 | + | 600 | WP_000940329.1 | DUF1367 family protein | - |
| C1P81_RS20330 () | 4020728..4021018 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| C1P81_RS20335 () | 4021015..4021569 | + | 555 | WP_000640143.1 | DUF1133 family protein | - |
| C1P81_RS20340 () | 4021722..4021895 | + | 174 | WP_000504450.1 | hypothetical protein | - |
| C1P81_RS20345 () | 4021957..4023113 | + | 1157 | WP_094106037.1 | IS3-like element IS600 family transposase | - |
| C1P81_RS20350 () | 4023184..4023666 | + | 483 | WP_000068107.1 | ORF6N domain-containing protein | - |
| C1P81_RS20380 () | 4024300..4025904 | + | 1605 | WP_000615491.1 | site-specific integrase | - |
| C1P81_RS20385 () | 4026726..4027894 | + | 1169 | WP_000747032.1 | IS3-like element IS911 family transposase | - |
| C1P81_RS20390 () | 4028272..4028424 | + | 153 | Protein_3909 | Rha family transcriptional regulator | - |
| C1P81_RS20395 () | 4028483..4029180 | + | 698 | WP_227804274.1 | IS1 family transposase | - |
| C1P81_RS20400 () | 4029196..4030101 | + | 906 | Protein_3911 | IS3 family transposase | - |
| C1P81_RS26440 () | 4030129..4030497 | + | 369 | WP_011069357.1 | hypothetical protein | - |
| C1P81_RS20415 () | 4030521..4031065 | + | 545 | Protein_3913 | tail fiber assembly protein | - |
| C1P81_RS20420 () | 4031089..4032353 | + | 1265 | Protein_3914 | prophage tail fiber N-terminal domain-containing protein | - |
| C1P81_RS20425 () | 4032304..4032927 | + | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| C1P81_RS20430 () | 4033128..4033985 | - | 858 | WP_000968134.1 | iron/manganese ABC transporter permease subunit SitD | - |
| C1P81_RS20435 () | 4033982..4034839 | - | 858 | WP_001101728.1 | iron/manganese ABC transporter permease subunit SitC | - |
| C1P81_RS20440 () | 4034836..4035663 | - | 828 | WP_000983722.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
| C1P81_RS20445 () | 4035663..4036577 | - | 915 | WP_000555620.1 | iron/manganese ABC transporter substrate-binding protein SitA | - |
| C1P81_RS20450 () | 4037009..4037650 | - | 642 | Protein_3920 | site-specific integrase | - |
| C1P81_RS20455 () | 4037704..4038401 | + | 698 | WP_225620329.1 | IS1 family transposase | - |
| C1P81_RS20460 () | 4038418..4038588 | - | 171 | Protein_3922 | DUF3596 domain-containing protein | - |
| C1P81_RS20465 () | 4038590..4038757 | - | 168 | WP_005049823.1 | excisionase family protein | - |
| C1P81_RS20470 () | 4038805..4040014 | - | 1210 | Protein_3924 | IS3 family transposase | - |
| C1P81_RS20475 () | 4040299..4040987 | + | 689 | Protein_3925 | IS3-like element IS911 family transposase | - |
| C1P81_RS20485 () | 4041660..4043168 | + | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| C1P81_RS20490 () | 4043249..4043737 | + | 489 | Protein_3927 | IS3 family transposase | - |
| C1P81_RS20495 () | 4043743..4044708 | - | 966 | WP_134799880.1 | AAA family ATPase | - |
| C1P81_RS20500 () | 4044714..4044974 | - | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| C1P81_RS20505 () | 4045073..4046229 | + | 1157 | Protein_3930 | IS3 family transposase | - |
| C1P81_RS20510 () | 4046286..4047701 | - | 1416 | Protein_3931 | exodeoxyribonuclease VIII | - |
| C1P81_RS20515 () | 4047801..4048076 | - | 276 | WP_005049830.1 | hypothetical protein | - |
| C1P81_RS20520 () | 4048151..4048321 | - | 171 | WP_001359121.1 | YdaE family protein | - |
| C1P81_RS20525 () | 4048321..4048542 | - | 222 | WP_000560226.1 | killing protein KilR | - |
| C1P81_RS20535 () | 4049889..4050777 | - | 889 | Protein_3936 | Rha family transcriptional regulator | - |
| C1P81_RS26445 () | 4052001..4052381 | + | 381 | Protein_3937 | IS66-like element accessory protein TnpA | - |
| C1P81_RS26450 () | 4052383..4052550 | + | 168 | Protein_3938 | phage tail protein | - |
| C1P81_RS20545 () | 4052501..4053124 | + | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| C1P81_RS26980 () | 4053130..4053234 | + | 105 | Protein_3940 | tail fiber assembly protein | - |
| C1P81_RS20555 () | 4053304..4055019 | - | 1716 | WP_128636480.1 | T3SS effector E3 ubiquitin-protein ligase IpaH3 | - |
| C1P81_RS20565 () | 4055561..4056258 | + | 698 | WP_223368647.1 | IS1 family transposase | - |
| C1P81_RS20570 () | 4056538..4056984 | + | 447 | Protein_3943 | metallophosphoesterase | - |
| C1P81_RS20575 () | 4057049..4058205 | + | 1157 | WP_094105045.1 | IS3-like element IS600 family transposase | - |
| C1P81_RS20580 () | 4058249..4058437 | + | 189 | Protein_3945 | serine/threonine-protein phosphatase | - |
| C1P81_RS20585 () | 4058462..4058653 | - | 192 | WP_005049838.1 | YebW family protein | - |
| C1P81_RS20590 () | 4058758..4058994 | - | 237 | WP_001295499.1 | YebV family protein | - |
| C1P81_RS20595 () | 4059112..4060551 | - | 1440 | Protein_3948 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C1P81_RS20600 () | 4060631..4063251 | - | 2621 | Protein_3949 | lipid-binding membrane homeostasis protein YebT | - |
| C1P81_RS20605 () | 4063220..4064503 | - | 1284 | WP_001207280.1 | membrane integrity lipid transport subunit YebS | - |
| C1P81_RS20610 () | 4064633..4065130 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| C1P81_RS20615 () | 4065227..4065925 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| C1P81_RS20620 () | 4065945..4067993 | + | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| C1P81_RS20625 () | 4068185..4069066 | + | 882 | WP_000984517.1 | protease HtpX | - |
| C1P81_RS20630 () | 4069112..4070485 | - | 1374 | WP_001127218.1 | MFS transporter | - |
| C1P81_RS20635 () | 4070662..4071453 | + | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| C1P81_RS20640 () | 4071596..4071835 | - | 240 | WP_001211010.1 | YobH family protein | - |
| C1P81_RS20645 () | 4071994..4072137 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| C1P81_RS20650 () | 4072212..4072499 | + | 288 | WP_001006860.1 | YebO family protein | - |
| C1P81_RS20655 () | 4073169..4073312 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| C1P81_RS20660 () | 4073325..4073534 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| C1P81_RS20665 () | 4073700..4074509 | + | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| C1P81_RS20670 () | 4074506..4075072 | - | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| C1P81_RS20680 () | 4076261..4076737 | - | 477 | WP_000156246.1 | DUF986 family protein | - |
| C1P81_RS20685 () | 4076792..4077643 | - | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| C1P81_RS20690 () | 4077656..4078456 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| C1P81_RS20695 () | 4078519..4079490 | - | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|