MGE detailed information
MGE type: Prophage MGE length: 61621 bp
Accession: NZ_CP026792 Location: 3777388..3839008 Organism: Shigella flexneri strain 61-4982 Replicon: chromosome
Accession: NZ_CP026792 Location: 3777388..3839008 Organism: Shigella flexneri strain 61-4982 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P80_RS19815 () | 3772640..3773551 | + | 912 | WP_005053105.1 | recombination-associated protein RdgC | - |
| C1P80_RS19820 () | 3773629..3774084 | - | 456 | WP_000194195.1 | hypothetical protein | - |
| C1P80_RS19825 () | 3774081..3774416 | - | 336 | Protein_3691 | DUF2773 domain-containing protein | - |
| C1P80_RS19830 () | 3774571..3774855 | - | 285 | WP_000941942.1 | pyrimidine/purine nucleoside phosphorylase | - |
| C1P80_RS19835 () | 3774927..3775604 | - | 678 | WP_001276420.1 | AroM family protein | - |
| C1P80_RS19840 () | 3775865..3776053 | - | 189 | WP_001142438.1 | protein YaiA | - |
| C1P80_RS19845 () | 3776103..3776627 | - | 525 | WP_000193385.1 | shikimate kinase AroL | - |
| C1P80_RS19850 () | 3776810..3777268 | - | 459 | WP_000158164.1 | YaiI/YqxD family protein | - |
| C1P80_RS19855 () | 3777388..3778197 | + | 810 | WP_001295331.1 | pyrroline-5-carboxylate reductase | - |
| C1P80_RS19860 () | 3778214..3779329 | - | 1116 | WP_005053118.1 | diguanylate cyclase AdrA | - |
| C1P80_RS19865 () | 3779480..3780689 | + | 1210 | Protein_3699 | IS3 family transposase IS629 | Transposase |
| C1P80_RS19870 () | 3780673..3781871 | + | 1199 | WP_171763936.1 | IS3 family transposase ISSd1 | Transposase |
| C1P80_RS19875 () | 3781917..3782273 | + | 357 | Protein_3701 | integrase | - |
| C1P80_RS19880 () | 3782535..3782897 | + | 363 | WP_000915848.1 | GtrA family protein | - |
| C1P80_RS19885 () | 3782894..3783808 | + | 915 | WP_000703662.1 | Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase | VF |
| C1P80_RS19890 () | 3783810..3785123 | + | 1314 | WP_025745203.1 | hypothetical protein | - |
| C1P80_RS19895 () | 3785157..3785636 | - | 480 | WP_000171493.1 | hypothetical protein | - |
| C1P80_RS19900 () | 3785795..3786941 | + | 1147 | WP_106495017.1 | IS3 family transposase ISEhe3 | Transposase |
| C1P80_RS19905 () | 3786958..3787473 | + | 516 | Protein_3707 | tail fiber assembly protein | - |
| C1P80_RS19910 () | 3787445..3787864 | - | 420 | WP_024260397.1 | tail fiber assembly protein | - |
| C1P80_RS19915 () | 3787869..3788519 | - | 651 | WP_000554680.1 | hypothetical protein | - |
| C1P80_RS19920 () | 3788523..3789107 | - | 585 | WP_000383532.1 | YmfQ family protein | - |
| C1P80_RS19925 () | 3789098..3790156 | - | 1059 | WP_000785319.1 | baseplate J/gp47 family protein | - |
| C1P80_RS19930 () | 3790143..3790567 | - | 425 | Protein_3712 | phage GP46 family protein | - |
| C1P80_RS19935 () | 3790567..3791115 | - | 549 | WP_001259067.1 | phage baseplate assembly protein V | - |
| C1P80_RS19940 () | 3791115..3792194 | - | 1080 | WP_000999510.1 | baseplate protein | - |
| C1P80_RS19945 () | 3792191..3793567 | - | 1377 | WP_024260396.1 | DNA circularization N-terminal domain-containing protein | - |
| C1P80_RS19950 () | 3793592..3795499 | - | 1908 | WP_000774667.1 | phage tail tape measure protein | - |
| C1P80_RS19955 () | 3795584..3795907 | - | 324 | WP_000571712.1 | phage tail assembly protein | - |
| C1P80_RS19960 () | 3795904..3796260 | - | 357 | WP_000090998.1 | phage tail tube protein | - |
| C1P80_RS19965 () | 3796260..3797756 | - | 1497 | WP_000155722.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| C1P80_RS19970 () | 3797740..3797910 | - | 171 | WP_000497751.1 | DUF2635 domain-containing protein | - |
| C1P80_RS19975 () | 3797919..3798479 | - | 561 | WP_025745201.1 | hypothetical protein | - |
| C1P80_RS19980 () | 3798476..3799000 | - | 525 | WP_001522202.1 | hypothetical protein | - |
| C1P80_RS19985 () | 3798972..3799382 | - | 411 | WP_000702400.1 | phage head closure protein | - |
| C1P80_RS19990 () | 3799379..3799702 | - | 324 | WP_000927722.1 | head-tail connector protein | - |
| C1P80_RS19995 () | 3799705..3799905 | - | 201 | WP_000601365.1 | hypothetical protein | - |
| C1P80_RS20000 () | 3799954..3801159 | - | 1206 | WP_000257490.1 | phage major capsid protein | - |
| C1P80_RS20005 () | 3801174..3801824 | - | 651 | WP_001193631.1 | HK97 family phage prohead protease | - |
| C1P80_RS20010 () | 3801802..3803043 | - | 1242 | WP_000466241.1 | phage portal protein | - |
| C1P80_RS20015 () | 3803043..3803225 | - | 183 | WP_000605606.1 | hypothetical protein | - |
| C1P80_RS20020 () | 3803237..3804970 | - | 1734 | WP_000088161.1 | terminase large subunit | - |
| C1P80_RS20025 () | 3804967..3805461 | - | 495 | WP_000929184.1 | phage terminase small subunit P27 family | - |
| C1P80_RS20030 () | 3805587..3805937 | - | 351 | WP_001135227.1 | HNH endonuclease | - |
| C1P80_RS20040 () | 3806389..3806781 | - | 393 | WP_005106761.1 | DUF2570 domain-containing protein | - |
| C1P80_RS20045 () | 3806765..3807241 | - | 477 | WP_001197751.1 | glycoside hydrolase family protein | - |
| C1P80_RS20050 () | 3807245..3807571 | - | 327 | WP_001120492.1 | phage holin, lambda family | - |
| C1P80_RS20055 () | 3807933..3809018 | + | 1086 | WP_025745200.1 | hypothetical protein | - |
| C1P80_RS20060 () | 3809037..3809363 | + | 327 | WP_025745199.1 | hypothetical protein | - |
| C1P80_RS20065 () | 3809357..3810054 | - | 698 | Protein_3738 | IS1 family transposase IS1G | Transposase |
| C1P80_RS20070 () | 3810096..3810326 | + | 231 | WP_134798395.1 | hypothetical protein | - |
| C1P80_RS20075 () | 3810347..3810709 | - | 363 | WP_001204823.1 | antitermination protein Q | - |
| C1P80_RS20080 () | 3810727..3811716 | - | 990 | WP_024260395.1 | DUF968 domain-containing protein | - |
| C1P80_RS20085 () | 3811724..3812539 | - | 816 | WP_001072674.1 | KilA-N domain-containing protein | - |
| C1P80_RS20090 () | 3812702..3813097 | - | 396 | Protein_3743 | RusA family crossover junction endodeoxyribonuclease | - |
| C1P80_RS20095 () | 3813094..3813420 | - | 327 | WP_000210181.1 | LexA family transcriptional regulator | - |
| C1P80_RS20100 () | 3813420..3813914 | - | 495 | WP_001407082.1 | PerC family transcriptional regulator | - |
| C1P80_RS20105 () | 3813911..3814852 | - | 942 | WP_000104967.1 | helix-turn-helix domain-containing protein | - |
| C1P80_RS20110 () | 3814842..3815021 | - | 180 | WP_001250269.1 | DUF4222 domain-containing protein | - |
| C1P80_RS20115 () | 3815197..3815748 | - | 552 | WP_000515868.1 | hypothetical protein | - |
| C1P80_RS20120 () | 3815792..3815992 | - | 201 | WP_000649477.1 | helix-turn-helix domain-containing protein | - |
| C1P80_RS20125 () | 3816083..3816757 | + | 675 | WP_000848748.1 | LexA family transcriptional repressor | - |
| C1P80_RS20130 () | 3816992..3817198 | + | 207 | WP_000549626.1 | hypothetical protein | - |
| C1P80_RS20135 () | 3817170..3817604 | - | 435 | WP_000016389.1 | hypothetical protein | - |
| C1P80_RS20145 () | 3817748..3818058 | + | 311 | Protein_3753 | hypothetical protein | - |
| C1P80_RS20150 () | 3818055..3818435 | + | 381 | WP_001325618.1 | hypothetical protein | - |
| C1P80_RS20155 () | 3818501..3819325 | + | 825 | WP_000081287.1 | DUF2303 family protein | - |
| C1P80_RS20160 () | 3819453..3819989 | + | 537 | WP_000008200.1 | 5'-deoxynucleotidase | - |
| C1P80_RS20165 () | 3819980..3820342 | + | 363 | WP_001242749.1 | phage protein | - |
| C1P80_RS20170 () | 3820342..3820647 | + | 306 | WP_000206732.1 | hypothetical protein | - |
| C1P80_RS20180 () | 3820874..3822037 | + | 1164 | WP_025761354.1 | Aerobic C4-dicarboxylate transport protein ; Integrase | Integrase |
| C1P80_RS20190 () | 3822242..3823495 | - | 1254 | WP_000893267.1 | glutamate-5-semialdehyde dehydrogenase | - |
| C1P80_RS20195 () | 3823507..3824610 | - | 1104 | WP_001285281.1 | glutamate 5-kinase | - |
| C1P80_RS20200 () | 3824801..3825498 | - | 698 | Protein_3762 | IS1 family transposase IS1X2 | Transposase |
| C1P80_RS20205 () | 3825674..3826729 | + | 1056 | WP_000749864.1 | phosphoporin PhoE | - |
| C1P80_RS20210 () | 3826768..3827169 | - | 402 | WP_000174678.1 | sigma factor-binding protein Crl | - |
| C1P80_RS20215 () | 3827227..3828471 | - | 1245 | WP_000189558.1 | esterase FrsA | - |
| - () | 3827887..3827967 | - | 81 | NuclAT_8 | - | - |
| - () | 3827887..3827967 | - | 81 | NuclAT_8 | - | - |
| - () | 3827887..3827967 | - | 81 | NuclAT_8 | - | - |
| - () | 3827887..3827967 | - | 81 | NuclAT_8 | - | - |
| C1P80_RS20220 () | 3828563..3829021 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| C1P80_RS20225 () | 3829283..3830740 | + | 1458 | WP_001293009.1 | cytosol nonspecific dipeptidase | - |
| C1P80_RS20230 () | 3830797..3831411 | - | 615 | Protein_3768 | peptide chain release factor H | - |
| C1P80_RS20235 () | 3831473..3832516 | - | 1044 | WP_005060486.1 | RNA ligase RtcB family protein | - |
| C1P80_RS20240 () | 3832762..3833214 | - | 453 | WP_001059861.1 | GNAT family N-acetyltransferase | - |
| C1P80_RS20245 () | 3833224..3833622 | - | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| C1P80_RS20250 () | 3833625..3833918 | - | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| C1P80_RS20255 () | 3833970..3835024 | - | 1055 | Protein_3773 | DNA polymerase IV | - |
| C1P80_RS20260 () | 3835095..3835880 | - | 786 | WP_000207561.1 | Dipeptide transport system permease protein DppC | VF |
| C1P80_RS20265 () | 3835852..3837564 | + | 1713 | Protein_3775 | Dipeptide transport system permease protein DppB | VF |
| C1P80_RS20270 () | 3837781..3838278 | - | 498 | WP_000006251.1 | REP-associated tyrosine transposase RayT | - |
| C1P80_RS20275 () | 3838454..3838975 | - | 522 | Protein_3777 | Methyl-accepting chemotaxis protein III | VF |
| C1P80_RS20280 () | 3839359..3840099 | + | 741 | WP_001225676.1 | murein L,D-transpeptidase | - |
| C1P80_RS20285 () | 3840070..3840837 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| C1P80_RS20290 () | 3841043..3841621 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|