MGE detailed information
MGE type: Prophage MGE length: 66865 bp
Accession: NZ_CP026788 Location: 889553..956417 Organism: Shigella flexneri 2a strain ATCC 29903 Replicon: chromosome
Accession: NZ_CP026788 Location: 889553..956417 Organism: Shigella flexneri 2a strain ATCC 29903 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P79_RS04840 () | 886101..887072 | + | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
| C1P79_RS04845 () | 887135..887935 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| C1P79_RS04850 () | 887948..888799 | + | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| C1P79_RS04855 () | 888854..889330 | + | 477 | WP_000156246.1 | DUF986 family protein | - |
| C1P79_RS04860 () | 889359..890056 | + | 698 | WP_227804321.1 | IS1 family transposase IS1X2 | Transposase |
| C1P79_RS04865 () | 890519..891085 | + | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| C1P79_RS04870 () | 891082..891891 | - | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| C1P79_RS04875 () | 892057..892266 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| C1P79_RS04880 () | 892279..892422 | - | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| C1P79_RS04885 () | 893092..893379 | - | 288 | WP_001006860.1 | YebO family protein | - |
| C1P79_RS04890 () | 893454..893597 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| C1P79_RS04895 () | 893756..893995 | + | 240 | WP_001211010.1 | YobH family protein | - |
| C1P79_RS04900 () | 894138..894929 | - | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| C1P79_RS04905 () | 895106..896479 | + | 1374 | WP_001127218.1 | MFS transporter | - |
| C1P79_RS04910 () | 896525..897406 | - | 882 | WP_000984517.1 | protease HtpX | - |
| C1P79_RS04915 () | 897598..899646 | - | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| C1P79_RS04920 () | 899666..900364 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| C1P79_RS04925 () | 900461..900958 | - | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| C1P79_RS04930 () | 901088..902371 | + | 1284 | WP_001207280.1 | membrane integrity lipid transport subunit YebS | - |
| C1P79_RS04935 () | 902340..904960 | + | 2621 | Protein_933 | hypothetical protein | VF |
| C1P79_RS04940 () | 905040..906479 | + | 1440 | Protein_934 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C1P79_RS04945 () | 906597..906833 | + | 237 | WP_001295499.1 | YebV family protein | - |
| C1P79_RS04950 () | 906938..907129 | + | 192 | WP_005049838.1 | YebW family protein | - |
| C1P79_RS04955 () | 907154..907342 | - | 189 | Protein_937 | serine/threonine-protein phosphatase | - |
| C1P79_RS04965 () | 908607..909053 | - | 447 | Protein_939 | metallophosphoesterase | - |
| C1P79_RS04980 () | 910581..912287 | + | 1707 | WP_000936828.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| C1P79_RS26160 () | 912357..912461 | - | 105 | Protein_942 | tail fiber assembly protein | - |
| C1P79_RS04990 () | 912467..913090 | - | 624 | WP_000551132.1 | DUF4376 domain-containing protein | - |
| C1P79_RS25790 () | 913041..913208 | - | 168 | Protein_944 | IS66 family transposase ISSfl3 | Transposase |
| C1P79_RS25795 () | 913210..913590 | - | 381 | Protein_945 | IS66 family transposase ISSfl3 | Transposase |
| C1P79_RS05000 () | 914814..915702 | + | 889 | Protein_946 | Rha family transcriptional regulator | - |
| C1P79_RS05005 () | 915699..916972 | + | 1274 | WP_094105053.1 | IS3 family transposase IS2 | Transposase |
| C1P79_RS05010 () | 917049..917270 | + | 222 | WP_000560226.1 | killing protein KilR | - |
| C1P79_RS05015 () | 917270..917440 | + | 171 | WP_001359121.1 | YdaE family protein | - |
| C1P79_RS05020 () | 917515..917790 | + | 276 | WP_005049830.1 | hypothetical protein | - |
| C1P79_RS05025 () | 917890..919305 | + | 1416 | Protein_951 | exodeoxyribonuclease VIII | - |
| C1P79_RS05030 () | 919362..920518 | - | 1157 | Protein_952 | IS3 family transposase IS600 | Transposase |
| C1P79_RS05035 () | 920617..920877 | + | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| C1P79_RS05040 () | 920883..921980 | + | 1098 | WP_001173294.1 | AAA family ATPase | - |
| C1P79_RS05045 () | 922055..923264 | + | 1210 | Protein_955 | IS3 family transposase IS629 | Transposase |
| C1P79_RS05050 () | 923312..923479 | + | 168 | WP_005049823.1 | excisionase family protein | - |
| C1P79_RS05055 () | 923481..923651 | + | 171 | Protein_957 | DUF3596 domain-containing protein | - |
| C1P79_RS05065 () | 924419..925060 | + | 642 | Protein_959 | Putative defective protein IntQ ; Integrase | Integrase |
| C1P79_RS05070 () | 925492..926406 | + | 915 | WP_000555620.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| C1P79_RS05075 () | 926406..927233 | + | 828 | WP_000983722.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| C1P79_RS05080 () | 927230..928087 | + | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| C1P79_RS05085 () | 928084..928941 | + | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| C1P79_RS05090 () | 929142..929765 | - | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| C1P79_RS05095 () | 929716..930984 | - | 1269 | WP_005098694.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C1P79_RS05100 () | 931008..931552 | - | 545 | Protein_966 | tail fiber assembly protein | - |
| C1P79_RS25800 () | 931576..931944 | - | 369 | WP_011069357.1 | hypothetical protein | - |
| C1P79_RS05115 () | 931972..932877 | - | 906 | Protein_968 | IS3 family transposase ISSd1 | Transposase |
| C1P79_RS05125 () | 933649..933801 | - | 153 | Protein_970 | Rha family transcriptional regulator | - |
| C1P79_RS05135 () | 936048..937652 | - | 1605 | WP_000615491.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| C1P79_RS05165 () | 938286..938768 | - | 483 | WP_000068107.1 | ORF6N domain-containing protein | - |
| C1P79_RS05175 () | 940057..940230 | - | 174 | WP_000504450.1 | hypothetical protein | - |
| C1P79_RS05180 () | 940383..940937 | - | 555 | WP_000640143.1 | DUF1133 family protein | - |
| C1P79_RS05185 () | 940934..941224 | - | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| C1P79_RS05190 () | 941224..941823 | - | 600 | WP_000940329.1 | DUF1367 family protein | - |
| C1P79_RS05195 () | 941957..942654 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| C1P79_RS05205 () | 943160..943315 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 943327..943385 | + | 59 | - | - | Antitoxin Detail |
| C1P79_RS05210 () | 943770..944135 | - | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| C1P79_RS05215 () | 944135..944800 | - | 666 | WP_000208062.1 | hypothetical protein | - |
| C1P79_RS05220 () | 944797..945162 | - | 366 | WP_001229298.1 | HNH endonuclease signature motif containing protein | - |
| C1P79_RS05225 () | 945164..945382 | - | 219 | WP_000256998.1 | DUF4014 family protein | - |
| C1P79_RS05230 () | 945475..945831 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| C1P79_RS05235 () | 945889..946311 | - | 423 | WP_001118168.1 | DUF977 family protein | - |
| C1P79_RS05240 () | 946326..947072 | - | 747 | WP_000788996.1 | ATP-binding protein | - |
| C1P79_RS26165 () | 947218..947387 | - | 170 | Protein_988 | hypothetical protein | - |
| C1P79_RS05250 () | 947866..949139 | + | 1274 | WP_094105053.1 | IS3 family transposase IS2 | Transposase |
| C1P79_RS05255 () | 949153..949563 | - | 411 | Protein_990 | YdaU family protein | - |
| C1P79_RS05260 () | 949667..950823 | + | 1157 | WP_094081493.1 | IS3 family transposase IS600 | Transposase |
| C1P79_RS05265 () | 950868..951302 | - | 435 | Protein_992 | HTH-type transcriptional regulator PgrR | VF |
| C1P79_RS05270 () | 951440..952360 | + | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| C1P79_RS25570 () | 952360..952719 | + | 360 | Protein_994 | alpha/beta hydrolase | - |
| C1P79_RS05280 () | 952736..953932 | - | 1197 | WP_005084161.1 | IS110 family transposase ISEc20 | Transposase |
| C1P79_RS05285 () | 954161..954742 | + | 582 | Protein_996 | alpha/beta hydrolase | - |
| C1P79_RS05290 () | 954760..955398 | + | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| C1P79_RS05295 () | 955689..956417 | + | 729 | WP_005049761.1 | murein tripeptide amidase MpaA | - |
| C1P79_RS05300 () | 956392..957357 | - | 966 | WP_005049759.1 | L-Ala-D/L-Glu epimerase | - |
| C1P79_RS05305 () | 957476..957982 | + | 507 | WP_000084387.1 | thiol peroxidase | - |
| C1P79_RS05310 () | 958026..959567 | - | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
| C1P79_RS05315 () | 959715..960776 | - | 1062 | WP_000138745.1 | YcjF family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|