MGE detailed information
MGE type: Prophage MGE length: 75921 bp
Accession: NZ_CP026788 Location: 206932..282852 Organism: Shigella flexneri 2a strain ATCC 29903 Replicon: chromosome
Accession: NZ_CP026788 Location: 206932..282852 Organism: Shigella flexneri 2a strain ATCC 29903 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P79_RS00955 () | 202686..203756 | - | 1071 | WP_000108918.1 | histidinol-phosphate transaminase | - |
| C1P79_RS00960 () | 203753..205057 | - | 1305 | WP_000009597.1 | histidinol dehydrogenase | - |
| C1P79_RS00965 () | 205063..205962 | - | 900 | WP_000131772.1 | ATP phosphoribosyltransferase | - |
| C1P79_RS00980 () | 206432..206704 | + | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| C1P79_RS00985 () | 206738..207435 | + | 698 | WP_232111816.1 | IS1 family transposase IS1X2 | Transposase |
| C1P79_RS00990 () | 207457..207711 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| C1P79_RS00995 () | 207794..208618 | + | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| C1P79_RS01000 () | 208664..209647 | + | 984 | WP_000803326.1 | LysR substrate-binding domain-containing protein | - |
| C1P79_RS01005 () | 209808..209870 | + | 63 | WP_097433929.1 | membrane protein YoeI | - |
| C1P79_RS01010 () | 209860..211218 | + | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| C1P79_RS01015 () | 211397..212455 | + | 1059 | WP_000492293.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| C1P79_RS01020 () | 212469..212696 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| C1P79_RS01025 () | 212739..214163 | - | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| C1P79_RS01030 () | 214345..215181 | + | 837 | Protein_198 | Prophage integrase IntA ; Integrase | Integrase |
| C1P79_RS01035 () | 215263..215937 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P79_RS01040 () | 215934..216284 | + | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P79_RS01045 () | 216281..217186 | + | 906 | Protein_201 | IS66 family transposase ISSfl3 | Transposase |
| C1P79_RS01050 () | 217276..218504 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| C1P79_RS01055 () | 218517..218804 | + | 288 | Protein_203 | transposase | - |
| C1P79_RS01060 () | 218869..220025 | + | 1157 | WP_175868071.1 | IS3 family transposase IS600 | Transposase |
| C1P79_RS01070 () | 220069..220485 | + | 417 | Protein_205 | IS66 family transposase ISSfl3 | Transposase |
| C1P79_RS01075 () | 220515..220868 | + | 354 | Protein_206 | hypothetical protein ; Integrase | Integrase |
| C1P79_RS01085 () | 220920..221306 | - | 387 | Protein_207 | IS3 family transposase ISLad1 | Transposase |
| C1P79_RS01090 () | 221340..222941 | - | 1602 | WP_045177795.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P79_RS25740 () | 222938..223117 | - | 180 | Protein_209 | IS66 family insertion sequence element accessory protein TnpB | - |
| C1P79_RS01100 () | 223173..224382 | + | 1210 | Protein_210 | IS3 family transposase IS629 | Transposase |
| C1P79_RS01105 () | 224427..224597 | - | 171 | Protein_211 | IS66 family transposase ISSfl3 | Transposase |
| C1P79_RS01110 () | 224594..225268 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P79_RS01115 () | 225353..225637 | + | 285 | Protein_213 | hypothetical protein | - |
| C1P79_RS01120 () | 225809..226138 | + | 330 | WP_000450409.1 | DUF496 family protein | - |
| C1P79_RS01125 () | 226239..226373 | - | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| C1P79_RS01130 () | 226475..226621 | + | 147 | Protein_216 | transposase domain-containing protein | - |
| C1P79_RS01135 () | 226999..227478 | - | 480 | Protein_217 | IS3 family transposase IS629 | Transposase |
| C1P79_RS01140 () | 227562..229070 | - | 1509 | WP_001189111.1 | group II intron reverse transcriptase/maturase | - |
| C1P79_RS01150 () | 229743..230478 | - | 736 | Protein_219 | IS3 family transposase | - |
| C1P79_RS01160 () | 230721..231877 | + | 1157 | WP_094081529.1 | IS3 family transposase IS600 | Transposase |
| C1P79_RS01170 () | 231889..232398 | + | 510 | WP_000261572.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| C1P79_RS01175 () | 232395..233138 | + | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| C1P79_RS01180 () | 233150..234229 | + | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| C1P79_RS01185 () | 234291..235226 | + | 936 | WP_000986341.1 | L,D-transpeptidase | - |
| C1P79_RS01195 () | 235685..236602 | + | 918 | WP_001011445.1 | nitrogen assimilation transcriptional regulator NAC | - |
| C1P79_RS01200 () | 236704..237654 | + | 951 | WP_001010988.1 | HTH-type transcriptional regulator Cbl | - |
| C1P79_RS01210 () | 237772..239399 | + | 1628 | Protein_227 | toxic metabolite efflux MATE transporter YeeO | - |
| C1P79_RS01220 () | 240031..240747 | - | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| C1P79_RS01225 () | 241090..242544 | - | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| C1P79_RS01230 () | 242646..242852 | - | 207 | WP_000466572.1 | hypothetical protein | - |
| C1P79_RS01235 () | 242853..244052 | - | 1200 | Protein_231 | IS3 family transposase IS600 | Transposase |
| C1P79_RS01240 () | 244117..244623 | - | 507 | Protein_232 | MFS transporter | - |
| C1P79_RS01245 () | 244679..245847 | + | 1169 | WP_094081534.1 | IS3 family transposase ISLad1 | Transposase |
| C1P79_RS01250 () | 245954..247216 | - | 1263 | Protein_234 | Prophage integrase IntA ; Integrase | Integrase |
| C1P79_RS01260 () | 247554..248351 | - | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| C1P79_RS01270 () | 248562..249612 | - | 1051 | Protein_236 | Tyrosine recombinase XerC ; Integrase | Integrase |
| C1P79_RS01275 () | 249612..249752 | - | 141 | Protein_237 | DUF4224 domain-containing protein | - |
| C1P79_RS01280 () | 249779..250195 | + | 417 | WP_005069274.1 | hypothetical protein | - |
| - | 250777..250835 | - | 59 | - | - | Antitoxin Detail |
| C1P79_RS01295 () | 250847..251002 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| C1P79_RS01305 () | 251170..251448 | + | 279 | WP_011069426.1 | hypothetical protein | - |
| C1P79_RS01310 () | 251450..252508 | + | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| C1P79_RS01315 () | 252509..252874 | + | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C1P79_RS01320 () | 252871..253559 | + | 689 | Protein_243 | bacteriophage antitermination protein Q | - |
| C1P79_RS01350 () | 254355..254570 | + | 216 | WP_000839572.1 | class II holin family protein | - |
| C1P79_RS01355 () | 254669..255343 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P79_RS01360 () | 255340..255690 | + | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P79_RS01365 () | 255687..256499 | + | 813 | Protein_247 | IS66 family transposase ISSfl3 | Transposase |
| C1P79_RS01370 () | 256565..257721 | + | 1157 | WP_094105050.1 | IS3 family transposase IS600 | Transposase |
| C1P79_RS01375 () | 257746..258105 | + | 360 | Protein_249 | hypothetical protein | - |
| C1P79_RS01380 () | 258115..258276 | + | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| C1P79_RS01385 () | 258273..259769 | + | 1497 | WP_000155744.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| C1P79_RS01390 () | 259769..260125 | + | 357 | WP_001062338.1 | phage tail tube protein | - |
| C1P79_RS01395 () | 260125..260460 | + | 336 | WP_001251340.1 | phage tail assembly protein | - |
| C1P79_RS01400 () | 260545..262494 | + | 1950 | WP_000785377.1 | phage tail tape measure protein | - |
| C1P79_RS01405 () | 262562..263044 | + | 483 | WP_000594909.1 | hypothetical protein | - |
| C1P79_RS01415 () | 263892..264749 | + | 858 | Protein_257 | IS3 family transposase IS600 | Transposase |
| C1P79_RS01420 () | 264790..265269 | + | 480 | Protein_258 | DUF4376 domain-containing protein | - |
| C1P79_RS01430 () | 265449..267092 | - | 1644 | WP_050544011.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| C1P79_RS01435 () | 267408..268076 | - | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| C1P79_RS01440 () | 268133..268402 | + | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| C1P79_RS01450 () | 269480..270130 | - | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| C1P79_RS01455 () | 270388..271023 | - | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| C1P79_RS01460 () | 271024..272028 | - | 1005 | Protein_264 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| C1P79_RS01465 () | 272137..272550 | - | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| C1P79_RS01470 () | 272683..273354 | + | 672 | WP_001347103.1 | putative transcriptional regulatory protein YedW | VF |
| C1P79_RS01475 () | 273354..274712 | + | 1359 | WP_000826718.1 | two-component system sensor histidine kinase HprS | - |
| C1P79_RS01480 () | 274820..275671 | - | 852 | WP_000218218.1 | protein deglycase HchA | - |
| C1P79_RS01490 () | 277042..277212 | - | 171 | Protein_270 | porin | - |
| C1P79_RS01495 () | 277315..278543 | + | 1229 | WP_111778310.1 | IS3 family transposase IS2 | Transposase |
| C1P79_RS01500 () | 278555..279265 | - | 711 | Protein_272 | porin | - |
| C1P79_RS01505 () | 279382..280529 | + | 1148 | WP_094081536.1 | IS3 family transposase ISEhe3 | Transposase |
| C1P79_RS01510 () | 280530..280787 | + | 258 | WP_032155863.1 | cell division protein DrpB | - |
| C1P79_RS01515 () | 280866..281367 | + | 502 | Protein_275 | HD domain-containing protein | - |
| C1P79_RS01520 () | 281434..282852 | + | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| C1P79_RS01525 () | 282833..283303 | + | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| C1P79_RS01530 () | 283292..284212 | - | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| C1P79_RS01535 () | 284385..285302 | + | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| C1P79_RS01540 () | 285381..285563 | + | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| C1P79_RS01545 () | 285734..287428 | + | 1695 | Protein_281 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|