MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 67064 bp
Accession: NZ_CP026781 Location: 1..67064 Organism: Shigella dysenteriae strain 53-3937 Replicon: plasmid unnamed
Accession: NZ_CP026781 Location: 1..67064 Organism: Shigella dysenteriae strain 53-3937 Replicon: plasmid unnamed
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P63_RS23955 () | 1..100 | + | 100 | Protein_0 | IS1 family transposase | - |
| C1P63_RS23960 () | 476..1566 | - | 1091 | Protein_1 | IS66 family transposase ISEc49 | Transposase |
| C1P63_RS23965 () | 1574..2142 | + | 569 | Protein_2 | plasmid segregation protein ParM | - |
| C1P63_RS23970 () | 2145..2510 | + | 366 | WP_000361391.1 | plasmid partitioning/stability family protein | - |
| C1P63_RS25595 () | 2602..2739 | + | 138 | WP_000766699.1 | hypothetical protein | - |
| C1P63_RS23975 () | 2871..3146 | - | 276 | WP_000421263.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C1P63_RS23980 () | 3146..3430 | - | 285 | WP_001178088.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| C1P63_RS23995 () | 4182..4391 | + | 210 | Protein_7 | peptidoglycan-binding protein | - |
| C1P63_RS24000 () | 4491..4676 | - | 186 | Protein_8 | IS21 family transposase IS100 | Transposase |
| C1P63_RS24010 () | 5012..5481 | + | 470 | Protein_9 | IS1 family transposase IS1N | Transposase |
| C1P63_RS25600 () | 5640..6278 | + | 639 | WP_000607008.1 | hypothetical protein | VF |
| C1P63_RS24020 () | 6393..6926 | + | 534 | Protein_11 | transposase | - |
| C1P63_RS25605 () | 6981..7121 | + | 141 | Protein_12 | IS3 family transposase IS2 | Transposase |
| C1P63_RS24025 () | 7186..7586 | + | 401 | Protein_13 | IS3 family transposase ISSfl10 | Transposase |
| C1P63_RS24030 () | 7642..8339 | + | 698 | Protein_14 | IS1 family transposase | - |
| C1P63_RS24035 () | 8355..9119 | + | 765 | Protein_15 | IS3 family transposase ISSd1 | Transposase |
| C1P63_RS25755 () | 9088..9163 | - | 76 | Protein_16 | aspartate oxidase | - |
| C1P63_RS24040 () | 9164..9487 | - | 324 | Protein_17 | DUF1281 domain-containing protein | - |
| C1P63_RS24050 () | 9926..10885 | + | 960 | WP_000921950.1 | plasmid segregation protein ParM | - |
| C1P63_RS24055 () | 10885..11280 | + | 396 | WP_000445931.1 | plasmid partitioning/stability family protein | - |
| C1P63_RS24060 () | 11460..11840 | + | 381 | WP_005015412.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| C1P63_RS24065 () | 11886..12730 | + | 845 | WP_134802192.1 | IS5 family transposase ISSfl7 | Transposase |
| C1P63_RS24075 () | 12879..14333 | - | 1455 | WP_000701102.1 | hypothetical protein | VF |
| C1P63_RS24080 () | 14758..15602 | + | 845 | Protein_23 | IS5 family transposase ISSfl7 | Transposase |
| C1P63_RS24085 () | 15772..16521 | - | 750 | WP_000828660.1 | phosphatase PAP2 family protein | - |
| C1P63_RS24100 () | 17699..17974 | - | 276 | Protein_26 | 5'-nucleotidase C-terminal domain-containing protein | - |
| C1P63_RS24110 () | 19308..20687 | - | 1380 | Protein_28 | bifunctional UDP-sugar hydrolase/5'-nucleotidase | - |
| C1P63_RS24115 () | 21028..22237 | - | 1210 | Protein_29 | IS3 family transposase IS629 | Transposase |
| C1P63_RS24120 () | 22303..22470 | - | 168 | Protein_30 | IS3 family transposase ISKpn38 | Transposase |
| C1P63_RS24125 () | 22511..22852 | - | 342 | Protein_31 | IS4 family transposase ISEc13 | Transposase |
| C1P63_RS24130 () | 22831..23537 | - | 707 | Protein_32 | IS256 family transposase IS1414 | Transposase |
| C1P63_RS24140 () | 23752..24445 | + | 694 | Protein_33 | IS1-like element IS1N family transposase | - |
| C1P63_RS24145 () | 24742..26439 | - | 1698 | WP_005015229.1 | hypothetical protein | VF |
| C1P63_RS24150 () | 26515..26648 | + | 134 | Protein_35 | IS1 family transposase | - |
| C1P63_RS24155 () | 26747..28159 | - | 1413 | WP_011379035.1 | hypothetical protein | VF |
| C1P63_RS24165 () | 29170..29727 | + | 558 | Protein_37 | IS110 family transposase ISEc11 | Transposase |
| C1P63_RS24170 () | 29774..30983 | + | 1210 | Protein_38 | IS3 family transposase IS629 | Transposase |
| C1P63_RS24180 () | 31177..31870 | + | 694 | Protein_39 | IS1 family transposase | - |
| C1P63_RS24185 () | 31885..32320 | - | 436 | Protein_40 | IS3 family transposase ISSfl11 | Transposase |
| C1P63_RS25610 () | 32359..32493 | + | 135 | Protein_41 | hypothetical protein | - |
| C1P63_RS24190 () | 32488..33641 | - | 1154 | Protein_42 | Serine protease SepA autotransporter | VF |
| C1P63_RS24200 () | 34003..34275 | + | 273 | WP_000019161.1 | hypothetical protein | - |
| C1P63_RS24205 () | 34256..35464 | + | 1209 | WP_134806339.1 | IS91 family transposase ISSbo1 | Transposase |
| C1P63_RS24210 () | 36574..37431 | - | 858 | WP_000130974.1 | incFII family plasmid replication initiator RepA | - |
| C1P63_RS24215 () | 37424..37498 | - | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| C1P63_RS24225 () | 37722..37982 | - | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| C1P63_RS24230 () | 38222..38734 | - | 513 | Protein_48 | DUF2726 domain-containing protein | - |
| C1P63_RS24235 () | 38782..39475 | + | 694 | Protein_49 | IS1 family transposase | - |
| C1P63_RS24240 () | 39624..39832 | - | 209 | Protein_50 | hemolysin expression modulator Hha | - |
| C1P63_RS24245 () | 39901..40194 | - | 294 | Protein_51 | thermonuclease family protein | - |
| C1P63_RS24250 () | 40241..40937 | + | 697 | Protein_52 | IS1 family transposase | - |
| C1P63_RS24255 () | 40953..41114 | - | 162 | Protein_53 | endonuclease | - |
| C1P63_RS24265 () | 41357..41569 | - | 213 | WP_004971339.1 | ANR family transcriptional regulator | - |
| C1P63_RS24270 () | 41699..42259 | - | 561 | WP_000139365.1 | fertility inhibition protein FinO | - |
| C1P63_RS24275 () | 42314..43060 | - | 747 | WP_000205723.1 | conjugal transfer pilus acetylase TraX | - |
| C1P63_RS24280 () | 43080..47936 | - | 4857 | WP_005015506.1 | Multifunctional conjugation protein TraI | Relaxase |
| C1P63_RS24285 () | 47923..48342 | - | 420 | WP_011379018.1 | Multifunctional conjugation protein TraI | Relaxase |
| C1P63_RS24290 () | 48424..48651 | + | 228 | WP_000450529.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| C1P63_RS24295 () | 48651..49049 | + | 399 | WP_000911312.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| C1P63_RS24300 () | 49058..50840 | - | 1783 | Protein_61 | type IV conjugative transfer system coupling protein TraD | - |
| C1P63_RS24305 () | 50906..52062 | + | 1157 | WP_134806340.1 | IS3 family transposase ISSd1 | Transposase |
| C1P63_RS24310 () | 52087..52860 | - | 774 | Protein_63 | IS4 family transposase IS421 | Transposase |
| C1P63_RS24315 () | 53033..53455 | + | 423 | Protein_64 | hypothetical protein | - |
| C1P63_RS25760 () | 53600..53731 | - | 132 | Protein_65 | IS66 family transposase ISCro1 | Transposase |
| C1P63_RS24320 () | 53729..54244 | - | 516 | Protein_66 | IS66 family transposase ISCro1 | Transposase |
| C1P63_RS24325 () | 54442..55386 | - | 945 | WP_004996485.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| C1P63_RS24330 () | 55451..56401 | - | 951 | WP_004970430.1 | virulence factor VirK | - |
| C1P63_RS24335 () | 56406..57494 | - | 1089 | WP_005015483.1 | putative hexosyltransferase CapU | - |
| C1P63_RS24340 () | 57497..58339 | - | 843 | WP_000931198.1 | polysaccharide deacetylase family protein | - |
| C1P63_RS24345 () | 58703..58885 | - | 183 | WP_134795997.1 | hypothetical protein | - |
| C1P63_RS24350 () | 58821..61733 | + | 2913 | WP_023636847.1 | ankyrin repeat protein | - |
| C1P63_RS24355 () | 61763..62087 | - | 325 | Protein_73 | IS3 family transposase | - |
| C1P63_RS25615 () | 62085..62276 | + | 192 | Protein_74 | IS66 family insertion sequence element accessory protein TnpB | - |
| C1P63_RS24365 () | 62290..63636 | - | 1347 | Protein_75 | IS4 family transposase IS4 | Transposase |
| C1P63_RS25620 () | 63699..63983 | - | 285 | Protein_76 | IS66 family insertion sequence element accessory protein TnpB | - |
| C1P63_RS24375 () | 64322..64912 | - | 591 | WP_000705601.1 | Protein kinase OspG | VF |
| C1P63_RS25765 () | 64941..65167 | - | 227 | Protein_78 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C1P63_RS24385 () | 65164..65433 | - | 270 | WP_000079957.1 | hypothetical protein | - |
| C1P63_RS24390 () | 65641..67064 | - | 1424 | WP_134810191.1 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|