MGE detailed information
MGE type: Prophage MGE length: 154319 bp
Accession: NZ_CP026780 Location: 781779..936097 Organism: Shigella dysenteriae strain 53-3937 Replicon: chromosome
Accession: NZ_CP026780 Location: 781779..936097 Organism: Shigella dysenteriae strain 53-3937 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P63_RS04185 () | 776844..777338 | - | 495 | WP_001028095.1 | pyrimidine utilization flavin reductase protein F | - |
| C1P63_RS04190 () | 777349..777939 | - | 591 | WP_001001203.1 | malonic semialdehyde reductase | - |
| C1P63_RS04195 () | 777952..778623 | - | 672 | Protein_783 | pyrimidine utilization protein D | - |
| C1P63_RS04200 () | 778631..779017 | - | 387 | WP_001126780.1 | pyrimidine utilization protein C | - |
| C1P63_RS04205 () | 779029..779721 | - | 693 | Protein_785 | peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB | - |
| C1P63_RS04210 () | 779721..780812 | - | 1092 | WP_005020331.1 | pyrimidine utilization protein A | - |
| C1P63_RS04215 () | 781101..781739 | + | 639 | WP_005020332.1 | HTH-type transcriptional regulator RutR | - |
| C1P63_RS04220 () | 781779..785741 | - | 3963 | Protein_788 | trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase | - |
| C1P63_RS25240 () | 785796..786005 | + | 210 | WP_000979516.1 | hypothetical protein | - |
| C1P63_RS04230 () | 786164..787672 | + | 1509 | WP_001018473.1 | sodium/proline symporter PutP | - |
| C1P63_RS04235 () | 787821..789150 | - | 1330 | Protein_791 | hypothetical protein | - |
| C1P63_RS04245 () | 789450..789572 | - | 123 | Protein_792 | IS1 family transposase | - |
| C1P63_RS04250 () | 789629..790326 | + | 698 | Protein_793 | IS1 family transposase | - |
| C1P63_RS04255 () | 790343..790920 | - | 578 | Protein_794 | IS1-like element IS1N family transposase | - |
| C1P63_RS04260 () | 790979..791374 | + | 396 | Protein_795 | CsgBAC operon transcriptional regulatory protein | VF |
| C1P63_RS04265 () | 791379..791768 | + | 390 | WP_000833289.1 | Curli production assembly/transport component CsgE | VF |
| C1P63_RS04270 () | 791793..792209 | + | 417 | WP_001264087.1 | Curli production assembly/transport component CsgF | VF |
| C1P63_RS04275 () | 792236..793069 | + | 834 | WP_001189330.1 | Curli production assembly/transport component CsgG | VF |
| C1P63_RS04285 () | 793161..793856 | + | 696 | Protein_799 | IS1 family transposase IS1N | Transposase |
| C1P63_RS04290 () | 793908..794399 | - | 492 | WP_001300785.1 | DUF1097 domain-containing protein | - |
| C1P63_RS04295 () | 794501..795055 | - | 555 | WP_001001927.1 | molecular chaperone YcdY | - |
| C1P63_RS04300 () | 795079..795816 | - | 738 | WP_000283663.1 | zinc-binding phosphatase | - |
| C1P63_RS04305 () | 795871..796809 | - | 939 | WP_000351336.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| C1P63_RS04315 () | 797279..798121 | - | 843 | WP_005020348.1 | DUF4942 domain-containing protein | - |
| C1P63_RS04320 () | 798218..798415 | - | 198 | WP_000839257.1 | DUF957 domain-containing protein | - |
| C1P63_RS04325 () | 798427..798918 | - | 492 | WP_000976859.1 | hypothetical protein | - |
| C1P63_RS04330 () | 798915..799289 | - | 375 | WP_001094433.1 | toxin | Toxin Detail |
| C1P63_RS04335 () | 799336..799713 | - | 378 | WP_001285603.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| C1P63_RS04340 () | 799763..800407 | - | 645 | WP_000086764.1 | hypothetical protein | - |
| C1P63_RS04345 () | 800426..800647 | - | 222 | WP_000692331.1 | DUF987 domain-containing protein | - |
| C1P63_RS04350 () | 800716..801168 | - | 453 | WP_134806258.1 | RadC family protein | - |
| C1P63_RS04355 () | 801184..801657 | - | 474 | WP_001313575.1 | antirestriction protein | - |
| C1P63_RS04365 () | 801937..802756 | - | 820 | Protein_813 | DUF945 domain-containing protein | - |
| C1P63_RS04380 () | 802857..803030 | - | 174 | WP_000088742.1 | DUF905 family protein | - |
| C1P63_RS04385 () | 803150..803633 | - | 484 | Protein_815 | hypothetical protein | - |
| C1P63_RS04390 () | 804064..804531 | - | 468 | WP_000668907.1 | hypothetical protein | - |
| C1P63_RS04395 () | 804664..804927 | - | 264 | WP_078164616.1 | phospholipase | - |
| C1P63_RS04400 () | 805025..806133 | + | 1109 | Protein_818 | IS3 family transposase ISSd1 | Transposase |
| C1P63_RS04420 () | 808872..811048 | + | 2177 | Protein_821 | Ferrienterobactin receptor | VF |
| C1P63_RS04425 () | 811093..812049 | - | 957 | WP_000271275.1 | Ferri-bacillibactin esterase BesA | VF |
| C1P63_RS04430 () | 812134..813362 | - | 1229 | Protein_823 | Enterochelin esterase | VF |
| C1P63_RS04435 () | 813466..817125 | - | 3660 | WP_011378643.1 | Multidrug efflux ATP-binding/permease protein | VF |
| C1P63_RS04440 () | 817265..818380 | - | 1116 | WP_005020367.1 | Elloramycin glycosyltransferase ElmGT | VF |
| C1P63_RS04470 () | 821987..822637 | - | 651 | WP_001007762.1 | metal-binding protein ZinT | - |
| C1P63_RS04475 () | 822894..823529 | - | 636 | WP_001240091.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| C1P63_RS04480 () | 823530..824534 | - | 1005 | WP_000740096.1 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| C1P63_RS04485 () | 824633..824755 | - | 123 | Protein_831 | hydroxyisourate hydrolase | - |
| C1P63_RS04490 () | 824760..825453 | - | 694 | Protein_832 | IS1 family transposase | - |
| C1P63_RS04495 () | 825511..825819 | - | 309 | Protein_833 | hydroxyisourate hydrolase | - |
| C1P63_RS04500 () | 825952..826602 | + | 651 | WP_005020386.1 | putative transcriptional regulatory protein YedW | VF |
| C1P63_RS04515 () | 827412..827777 | + | 366 | WP_078164536.1 | permease | - |
| C1P63_RS04520 () | 827817..828501 | + | 685 | Protein_837 | phosphohydrolase | - |
| C1P63_RS04525 () | 828568..829986 | + | 1419 | WP_001157258.1 | DNA-cytosine methyltransferase | - |
| C1P63_RS04530 () | 829967..830437 | + | 471 | WP_000785996.1 | VSPR family DNA mismatch endonuclease | - |
| C1P63_RS04535 () | 830426..831346 | - | 921 | WP_001212213.1 | drug/metabolite exporter YedA | - |
| C1P63_RS04540 () | 831519..832436 | + | 918 | WP_000922683.1 | DUF808 domain-containing protein | - |
| C1P63_RS04545 () | 832515..832697 | + | 183 | WP_000009307.1 | DUF2158 domain-containing protein | - |
| C1P63_RS04550 () | 832886..834562 | + | 1677 | WP_000431441.1 | cellulose biosynthesis regulator YedQ | - |
| C1P63_RS04555 () | 834559..835374 | - | 816 | WP_000491523.1 | mannosyl-3-phosphoglycerate phosphatase-related protein | - |
| C1P63_RS04560 () | 835672..835899 | - | 228 | WP_000844800.1 | peroxide/acid resistance protein YodD | - |
| C1P63_RS04565 () | 836048..836236 | + | 189 | WP_000867217.1 | protein DsrB | - |
| C1P63_RS04570 () | 836280..836516 | - | 237 | Protein_847 | Transcriptional regulatory protein RcsA | VF |
| C1P63_RS04575 () | 836576..837270 | + | 695 | WP_134801557.1 | IS1 family transposase IS1N | Transposase |
| C1P63_RS04580 () | 837345..838042 | - | 698 | Protein_849 | IS1 family transposase | - |
| C1P63_RS04585 () | 838089..838361 | + | 273 | Protein_850 | leucine-rich repeat domain-containing protein | - |
| C1P63_RS04600 () | 839147..839524 | + | 378 | WP_023600695.1 | hypothetical protein | - |
| C1P63_RS04605 () | 839439..840164 | + | 726 | WP_011378644.1 | hypothetical protein ; Integrase | Integrase |
| C1P63_RS04615 () | 840658..840927 | - | 270 | Protein_854 | tail fiber assembly protein | - |
| C1P63_RS04620 () | 840984..841652 | + | 669 | WP_000239883.1 | class I SAM-dependent methyltransferase | - |
| C1P63_RS04625 () | 842016..842267 | + | 252 | Protein_856 | IS1 family transposase IS1N | Transposase |
| C1P63_RS04630 () | 842380..843608 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| C1P63_RS04635 () | 843618..844045 | + | 428 | Protein_858 | IS1 family transposase IS1N | Transposase |
| C1P63_RS04640 () | 844077..845569 | + | 1493 | Protein_859 | E3 ubiquitin-protein ligase ipaH3 | VF |
| C1P63_RS25385 () | 846809..846985 | + | 177 | WP_000114005.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| C1P63_RS25390 () | 846986..847165 | - | 180 | WP_001039884.1 | hypothetical protein | - |
| C1P63_RS04655 () | 847165..847320 | - | 156 | Protein_863 | DUF4376 domain-containing protein | - |
| C1P63_RS04660 () | 847313..848346 | - | 1034 | Protein_864 | prophage tail fiber N-terminal domain-containing protein | - |
| C1P63_RS04665 () | 848370..848915 | - | 546 | WP_134806257.1 | tail fiber assembly protein | - |
| C1P63_RS04670 () | 848918..849031 | - | 114 | WP_000111993.1 | tail protein | - |
| C1P63_RS04675 () | 849070..850225 | + | 1156 | Protein_867 | IS3 family transposase ISSd1 | Transposase |
| C1P63_RS04680 () | 850263..850484 | + | 222 | Protein_868 | integrase | - |
| C1P63_RS04690 () | 851232..851339 | + | 108 | Protein_870 | integrase | - |
| C1P63_RS04700 () | 851531..852328 | + | 798 | WP_005023745.1 | DgsA anti-repressor MtfA | - |
| C1P63_RS04710 () | 852817..855025 | + | 2209 | Protein_872 | inverse autotransporter beta domain-containing protein | - |
| C1P63_RS04720 () | 856358..856483 | - | 126 | Protein_874 | prophage tail fiber N-terminal domain-containing protein | - |
| C1P63_RS04725 () | 856489..857444 | - | 956 | Protein_875 | late control protein | - |
| C1P63_RS04730 () | 857459..858152 | - | 694 | Protein_876 | IS1 family transposase | - |
| C1P63_RS04735 () | 858297..858990 | - | 694 | Protein_877 | IS1 family transposase | - |
| C1P63_RS04740 () | 859115..859786 | - | 672 | WP_000334642.1 | SOS response-associated peptidase | - |
| C1P63_RS04745 () | 859895..860128 | - | 234 | WP_000790504.1 | sulfurtransferase-like selenium metabolism protein YedF | - |
| C1P63_RS04750 () | 860125..861329 | - | 1205 | Protein_880 | selenium metabolism membrane protein YedE/FdhT | - |
| C1P63_RS04755 () | 861516..861929 | + | 414 | WP_001295642.1 | lipoprotein | - |
| C1P63_RS04760 () | 861963..863450 | - | 1488 | WP_001245709.1 | alpha-amylase | - |
| C1P63_RS04765 () | 863528..863893 | - | 366 | Protein_883 | Flagellar protein FliT | VF |
| C1P63_RS04770 () | 863893..864303 | - | 411 | WP_000270670.1 | Flagellar secretion chaperone FliS | VF |
| C1P63_RS04775 () | 864328..865725 | - | 1398 | WP_000146756.1 | Flagellar hook-associated protein 2 | VF |
| C1P63_RS04780 () | 865991..866626 | + | 636 | Protein_886 | Flagellin | VF |
| C1P63_RS04785 () | 866653..867351 | + | 699 | WP_134810174.1 | hypothetical protein | - |
| C1P63_RS04790 () | 867345..868042 | - | 698 | Protein_888 | IS1 family transposase | - |
| C1P63_RS04795 () | 868102..868431 | + | 330 | Protein_889 | Flagellin | VF |
| C1P63_RS04800 () | 868749..869468 | + | 720 | WP_001087458.1 | RNA polymerase sigma factor FliA | VF |
| C1P63_RS04805 () | 869514..870065 | + | 552 | WP_001362553.1 | Regulator of sigma S factor FliZ | VF |
| C1P63_RS04810 () | 870153..870953 | + | 801 | WP_024259540.1 | L-cystine-binding protein FliY | VF |
| C1P63_RS04815 () | 871058..872044 | + | 987 | WP_001128217.1 | D-cysteine desulfhydrase | - |
| C1P63_RS04820 () | 872059..872727 | + | 669 | WP_001158223.1 | cystine ABC transporter permease | - |
| C1P63_RS04825 () | 872724..873476 | + | 753 | WP_001272979.1 | Arginine transport ATP-binding protein ArtM | VF |
| C1P63_RS04830 () | 873706..874260 | + | 555 | Protein_896 | transcriptional regulator SdiA | - |
| C1P63_RS04835 () | 874319..875013 | + | 695 | WP_087786203.1 | IS1 family transposase IS1N | Transposase |
| C1P63_RS04840 () | 875029..875202 | + | 174 | Protein_898 | transcriptional regulator SdiA | - |
| C1P63_RS04845 () | 875270..875494 | - | 225 | WP_000106474.1 | DUF2594 family protein | - |
| C1P63_RS04850 () | 875481..875657 | - | 177 | WP_000590344.1 | hypothetical protein | - |
| C1P63_RS04855 () | 875953..876609 | + | 657 | WP_000611328.1 | Response regulator UvrY | VF |
| C1P63_RS04860 () | 876606..878438 | + | 1833 | WP_001283422.1 | excinuclease ABC subunit UvrC | - |
| C1P63_RS04865 () | 878495..879043 | + | 549 | WP_001160187.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| C1P63_RS04885 () | 879693..880358 | + | 666 | WP_000847882.1 | UPF0149 family protein YecA | - |
| C1P63_RS04890 () | 880420..881631 | - | 1212 | WP_000797563.1 | tyrosine transporter TyrP | - |
| C1P63_RS04895 () | 881823..882062 | + | 240 | WP_000377227.1 | YecH family protein | - |
| C1P63_RS04900 () | 882100..882597 | - | 498 | WP_000917208.1 | non-heme ferritin | - |
| C1P63_RS04910 () | 883980..884483 | + | 504 | WP_000179469.1 | non-heme ferritin-like protein | - |
| C1P63_RS04915 () | 884562..884813 | - | 252 | WP_000082127.1 | DUF2766 domain-containing protein | - |
| C1P63_RS04920 () | 884928..885014 | - | 87 | WP_010723106.1 | stress response protein AzuC | - |
| C1P63_RS04930 () | 885911..886900 | + | 990 | WP_000548680.1 | arabinose ABC transporter substrate-binding protein AraF | - |
| C1P63_RS04935 () | 886970..888484 | + | 1515 | WP_001187828.1 | Arabinose import ATP-binding protein AraG | VF |
| C1P63_RS04940 () | 888499..889485 | + | 987 | WP_000100195.1 | arabinose ABC transporter permease AraH | - |
| C1P63_RS04945 () | 889652..889897 | + | 246 | Protein_916 | trehalose-phosphatase | - |
| C1P63_RS04950 () | 890029..891179 | + | 1151 | Protein_917 | IS3 family transposase ISSd1 | Transposase |
| C1P63_RS25395 () | 891231..891929 | + | 699 | Protein_918 | IS3 family transposase ISSd1 | Transposase |
| C1P63_RS04955 () | 891989..893157 | + | 1169 | WP_134801768.1 | IS3 family transposase ISLad1 | Transposase |
| C1P63_RS04960 () | 893166..893723 | + | 558 | Protein_920 | trehalose-phosphatase | - |
| C1P63_RS04965 () | 893698..895122 | + | 1425 | WP_001295646.1 | alpha,alpha-trehalose-phosphate synthase | - |
| C1P63_RS04970 () | 895129..895557 | - | 429 | WP_000122432.1 | universal stress protein UspC | - |
| C1P63_RS04975 () | 896337..896687 | + | 351 | WP_001295647.1 | Flagellar transcriptional regulator FlhD | VF |
| C1P63_RS04980 () | 896690..897235 | + | 546 | WP_001291610.1 | Flagellar transcriptional regulator FlhC | VF |
| C1P63_RS04985 () | 897361..898248 | + | 888 | WP_000906323.1 | Motility protein A | VF |
| C1P63_RS04990 () | 898245..899135 | + | 891 | Protein_926 | flagellar motor protein MotB | - |
| C1P63_RS05000 () | 900446..901140 | + | 695 | WP_134801570.1 | IS1 family transposase IS1N | Transposase |
| C1P63_RS05005 () | 901172..902755 | + | 1584 | Protein_929 | Flagellar biosynthesis protein FlhA | VF |
| C1P63_RS05010 () | 902755..903147 | + | 393 | WP_001259578.1 | Flagellar protein FlhE | VF |
| C1P63_RS05015 () | 903268..903756 | - | 489 | Protein_931 | lysozyme inhibitor LprI family protein | - |
| C1P63_RS05020 () | 903779..904476 | - | 698 | Protein_932 | IS1 family transposase | - |
| C1P63_RS05025 () | 904711..906444 | - | 1734 | WP_001025331.1 | arginine--tRNA ligase | - |
| C1P63_RS05030 () | 906660..907226 | + | 567 | WP_005023645.1 | VOC family protein | - |
| C1P63_RS05035 () | 907240..907985 | + | 746 | Protein_935 | copper homeostasis protein CutC | - |
| C1P63_RS05040 () | 908373..908615 | + | 243 | Protein_936 | NapC/NirT family cytochrome c | - |
| C1P63_RS05050 () | 908672..909366 | + | 695 | WP_087786203.1 | IS1 family transposase IS1N | Transposase |
| C1P63_RS05055 () | 909381..909761 | + | 381 | Protein_938 | NapC/NirT family cytochrome c | - |
| C1P63_RS05065 () | 909821..910514 | + | 694 | Protein_939 | IS1 family transposase | - |
| C1P63_RS05070 () | 910529..911020 | + | 492 | Protein_940 | cytochrome C | - |
| C1P63_RS05075 () | 911045..913387 | + | 2343 | WP_134806255.1 | trimethylamine N-oxide reductase TorZ | - |
| C1P63_RS05080 () | 913552..914523 | - | 972 | WP_000564728.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| C1P63_RS05085 () | 914520..915263 | - | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| C1P63_RS05090 () | 915304..915699 | - | 396 | WP_000252980.1 | MAPEG family protein | - |
| C1P63_RS05095 () | 915752..916099 | - | 348 | WP_000599619.1 | DUF72 domain-containing protein | - |
| C1P63_RS05100 () | 916203..916820 | + | 618 | WP_001204616.1 | hypothetical protein | - |
| C1P63_RS05105 () | 916856..917550 | + | 695 | Protein_947 | IS1 family transposase IS1N | Transposase |
| C1P63_RS05110 () | 917579..917797 | + | 219 | WP_158249623.1 | hypothetical protein | - |
| C1P63_RS05115 () | 917910..918182 | + | 273 | Protein_949 | IS1 family transposase | - |
| C1P63_RS05120 () | 918278..919506 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| C1P63_RS05125 () | 919518..919943 | + | 426 | Protein_951 | IS1-like element IS1B family transposase | - |
| C1P63_RS05140 () | 922739..923436 | - | 698 | Protein_953 | IS1 family transposase | - |
| C1P63_RS05145 () | 923937..925133 | - | 1197 | WP_005023623.1 | IS110 family transposase ISEc20 | Transposase |
| C1P63_RS05150 () | 925324..925578 | - | 255 | WP_000891605.1 | isochorismatase family protein | - |
| C1P63_RS05155 () | 925888..927660 | + | 1773 | WP_001258651.1 | aspartate--tRNA ligase | - |
| C1P63_RS05160 () | 927778..928230 | + | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| C1P63_RS05165 () | 928259..928999 | + | 741 | WP_000907249.1 | putative transcriptional regulatory protein YebC | VF |
| C1P63_RS05170 () | 929034..929555 | + | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| C1P63_RS05175 () | 929557..930159 | - | 603 | WP_001024959.1 | YebB family permuted papain-like enzyme | - |
| C1P63_RS05180 () | 930230..930295 | + | 66 | WP_010723105.1 | stress response small protein YobI | - |
| C1P63_RS05185 () | 930434..931045 | + | 612 | WP_000580325.1 | Holliday junction branch migration protein RuvA | - |
| C1P63_RS05190 () | 931054..932064 | + | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| C1P63_RS05195 () | 932211..932996 | - | 786 | WP_000571488.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| C1P63_RS05200 () | 932993..933748 | - | 756 | WP_000202986.1 | Zinc import ATP-binding protein ZnuC | VF |
| C1P63_RS05205 () | 933827..934759 | + | 933 | WP_005023617.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| C1P63_RS05210 () | 934775..936097 | + | 1323 | WP_001184039.1 | murein DD-endopeptidase MepM | - |
| C1P63_RS05215 () | 936217..937188 | + | 972 | WP_000448373.1 | lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase | - |
| C1P63_RS05220 () | 937319..938761 | - | 1443 | WP_000091154.1 | pyruvate kinase | - |
| C1P63_RS05225 () | 938889..939757 | - | 869 | Protein_970 | DNA-binding transcriptional regulator HexR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|