Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 798915..799713 | Replicon | chromosome |
| Accession | NZ_CP026780 | ||
| Organism | Shigella dysenteriae strain 53-3937 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | Q32HN1 |
| Locus tag | C1P63_RS04330 | Protein ID | WP_001094433.1 |
| Coordinates | 798915..799289 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | Q32HN0 |
| Locus tag | C1P63_RS04335 | Protein ID | WP_001285603.1 |
| Coordinates | 799336..799713 (-) | Length | 126 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P63_RS04295 | 794501..795055 | - | 555 | WP_001001927.1 | molecular chaperone YcdY | - |
| C1P63_RS04300 | 795079..795816 | - | 738 | WP_000283663.1 | zinc-binding phosphatase | - |
| C1P63_RS04305 | 795871..796809 | - | 939 | WP_000351336.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| C1P63_RS04315 | 797279..798121 | - | 843 | WP_005020348.1 | DUF4942 domain-containing protein | - |
| C1P63_RS04320 | 798218..798415 | - | 198 | WP_000839257.1 | DUF957 domain-containing protein | - |
| C1P63_RS04325 | 798427..798918 | - | 492 | WP_000976859.1 | hypothetical protein | - |
| C1P63_RS04330 | 798915..799289 | - | 375 | WP_001094433.1 | toxin | Toxin |
| C1P63_RS04335 | 799336..799713 | - | 378 | WP_001285603.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| C1P63_RS04340 | 799763..800407 | - | 645 | WP_000086764.1 | hypothetical protein | - |
| C1P63_RS04345 | 800426..800647 | - | 222 | WP_000692331.1 | DUF987 domain-containing protein | - |
| C1P63_RS04350 | 800716..801168 | - | 453 | WP_134806258.1 | RadC family protein | - |
| C1P63_RS04355 | 801184..801657 | - | 474 | WP_001313575.1 | antirestriction protein | - |
| C1P63_RS04365 | 801937..802756 | - | 820 | Protein_813 | DUF945 domain-containing protein | - |
| C1P63_RS04380 | 802857..803030 | - | 174 | WP_000088742.1 | DUF905 family protein | - |
| C1P63_RS04385 | 803150..803633 | - | 484 | Protein_815 | hypothetical protein | - |
| C1P63_RS04390 | 804064..804531 | - | 468 | WP_000668907.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | csgD / csgE / csgF / csgG / iroN / iroN / iroE / iroD / iroD / iroC / iroB / rcsA / ipaH9.8 / ipaH9.8 / fliC / fliA / flhD / flhC / motA / motB / motB / flhA | 781779..936097 | 154318 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13918.86 Da Isoelectric Point: 6.8517
>T95850 WP_001094433.1 NZ_CP026780:c799289-798915 [Shigella dysenteriae]
MNTLPDTHVREASGCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSPLINSIDILRARRVTGLMTRDNYRTVNNITLGKHPEAK
MNTLPDTHVREASGCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSPLINSIDILRARRVTGLMTRDNYRTVNNITLGKHPEAK
Download Length: 375 bp
>T95850 NZ_CP026780:c799289-798915 [Shigella dysenteriae]
ATGAATACATTACCCGACACTCACGTACGGGAGGCATCGGGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTACGGCCTCACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGTATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCCGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGTGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATAACCCTGGGTAAGCATCCGGAGGCGAAATGA
ATGAATACATTACCCGACACTCACGTACGGGAGGCATCGGGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTACGGCCTCACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGTATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCCGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGTGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATAACCCTGGGTAAGCATCCGGAGGCGAAATGA
Antitoxin
Download Length: 126 a.a. Molecular weight: 13789.72 Da Isoelectric Point: 6.4643
>AT95850 WP_001285603.1 NZ_CP026780:c799713-799336 [Shigella dysenteriae]
VSDTLPGTTLPDDNKDRPWWRLPCTVTPCFGARLVQEGNQLHYLADRAGIRGRFSNADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPAAPAITV
VSDTLPGTTLPDDNKDRPWWRLPCTVTPCFGARLVQEGNQLHYLADRAGIRGRFSNADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPAAPAITV
Download Length: 378 bp
>AT95850 NZ_CP026780:c799713-799336 [Shigella dysenteriae]
GTGTCAGACACACTCCCCGGGACAACGCTTCCCGACGATAACAAAGACCGCCCCTGGTGGAGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCAGTTGCATTACCTTGCAGACCGCGCCGGTATCAGAGGCCGGT
TCAGCAATGCGGATGCATACCATCTGGACCAGGCTTTTCCACTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACACTGTATGCGAAAGGGCTGACCTGCGAAGCTGATACCCTTGGCAGTTG
TGGTTACGTTTATCTGGCTGTTTATCCGACACCGGCAGCACCCGCAATCACCGTATAA
GTGTCAGACACACTCCCCGGGACAACGCTTCCCGACGATAACAAAGACCGCCCCTGGTGGAGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCAGTTGCATTACCTTGCAGACCGCGCCGGTATCAGAGGCCGGT
TCAGCAATGCGGATGCATACCATCTGGACCAGGCTTTTCCACTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACACTGTATGCGAAAGGGCTGACCTGCGAAGCTGATACCCTTGGCAGTTG
TGGTTACGTTTATCTGGCTGTTTATCCGACACCGGCAGCACCCGCAATCACCGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A090NBY3 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A090NW75 |