MGE detailed information
MGE type: Prophage MGE length: 49242 bp
Accession: NZ_CP026777 Location: 6889..56130 Organism: Shigella dysenteriae strain 69-3818 Replicon: chromosome
Accession: NZ_CP026777 Location: 6889..56130 Organism: Shigella dysenteriae strain 69-3818 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5C01_RS00020 () | 3340..4341 | + | 1002 | WP_000566392.1 | low-specificity L-threonine aldolase | - |
| C5C01_RS00025 () | 4352..5781 | + | 1430 | Protein_4 | DUF2867 domain-containing protein | - |
| C5C01_RS00030 () | 5880..6892 | + | 1013 | Protein_5 | NAD(P)-dependent oxidoreductase | - |
| C5C01_RS00035 () | 6889..7719 | - | 831 | WP_001255151.1 | N-acetylmuramoyl-L-alanine amidase AmiD | - |
| C5C01_RS00040 () | 7716..8038 | - | 323 | Protein_7 | heavy metal-binding domain-containing protein | - |
| C5C01_RS00050 () | 8249..8656 | - | 408 | Protein_8 | pentapeptide repeat-containing protein | - |
| C5C01_RS00055 () | 8712..9409 | + | 698 | Protein_9 | IS1 family transposase | - |
| C5C01_RS00060 () | 9425..9688 | - | 264 | Protein_10 | pentapeptide repeat-containing protein | - |
| C5C01_RS00065 () | 9704..10401 | - | 698 | Protein_11 | IS1 family transposase | - |
| C5C01_RS00070 () | 10457..10723 | - | 267 | Protein_12 | hypothetical protein | - |
| C5C01_RS00075 () | 10739..11432 | - | 694 | Protein_13 | IS1-like element IS1N family transposase | - |
| C5C01_RS00080 () | 11490..12245 | - | 756 | Protein_14 | pentapeptide repeat-containing protein | - |
| C5C01_RS00090 () | 12569..13262 | + | 694 | Protein_15 | IS1-like element IS1N family transposase | - |
| C5C01_RS00100 () | 13666..14182 | + | 517 | Protein_16 | lipoprotein | - |
| C5C01_RS00105 () | 14400..15128 | + | 729 | WP_000027205.1 | Arginine transport ATP-binding protein ArtP | VF |
| C5C01_RS00110 () | 15146..15877 | + | 732 | WP_000756570.1 | arginine ABC transporter substrate-binding protein | - |
| C5C01_RS00115 () | 15884..16600 | + | 717 | WP_001001693.1 | arginine ABC transporter permease ArtQ | - |
| C5C01_RS00120 () | 16600..17268 | + | 669 | WP_000464490.1 | arginine ABC transporter permease ArtM | - |
| C5C01_RS00125 () | 17559..17879 | + | 321 | Protein_21 | ABC transporter arginine-binding protein 1 | VF |
| C5C01_RS00140 () | 18646..18786 | - | 141 | Protein_23 | HNH endonuclease | - |
| C5C01_RS00145 () | 18824..19546 | - | 723 | WP_001004003.1 | DNA-binding protein | - |
| C5C01_RS00150 () | 19621..20298 | - | 678 | WP_000957540.1 | phage antirepressor Ant | - |
| C5C01_RS00155 () | 20619..20948 | + | 330 | WP_024258354.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C5C01_RS00160 () | 20938..21246 | + | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| C5C01_RS00165 () | 21243..21464 | - | 222 | WP_001254231.1 | NinE family protein | - |
| C5C01_RS00170 () | 21461..21871 | - | 411 | WP_000814621.1 | recombination protein NinB | - |
| C5C01_RS00180 () | 23289..24293 | + | 1005 | Protein_31 | Tyrosine recombinase XerD ; Integrase | Integrase |
| C5C01_RS00185 () | 24351..24911 | - | 561 | WP_001215754.1 | DUF1175 domain-containing protein | - |
| C5C01_RS00190 () | 24908..25249 | - | 342 | Protein_33 | DUF2138 family protein | - |
| C5C01_RS00195 () | 25485..28112 | - | 2628 | WP_001281279.1 | DNA topoisomerase (ATP-hydrolyzing) subunit A | - |
| C5C01_RS00200 () | 28259..28981 | + | 723 | WP_000990765.1 | bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase | - |
| C5C01_RS00205 () | 29122..32892 | - | 3771 | Protein_36 | AIDA-I family autotransporter adhesin YfaL/EhaC | - |
| C5C01_RS00210 () | 33588..35873 | + | 2286 | WP_001075157.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| C5C01_RS00215 () | 36019..37149 | + | 1131 | WP_000332037.1 | ribonucleotide-diphosphate reductase subunit beta | - |
| C5C01_RS00220 () | 37149..37403 | + | 255 | WP_000124825.1 | ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE | - |
| C5C01_RS00225 () | 37457..38107 | - | 651 | Protein_40 | lipopolysaccharide kinase InaA | - |
| C5C01_RS00230 () | 38188..39378 | - | 1191 | WP_000660231.1 | MFS transporter | - |
| C5C01_RS00235 () | 39543..40414 | + | 872 | Protein_42 | LysR family transcriptional regulator | - |
| C5C01_RS00240 () | 40459..41538 | - | 1080 | WP_000779098.1 | glycerophosphodiester phosphodiesterase | - |
| C5C01_RS00245 () | 41543..42901 | - | 1359 | WP_000948705.1 | glycerol-3-phosphate transporter | - |
| C5C01_RS00250 () | 43174..44802 | + | 1629 | WP_000857263.1 | anaerobic glycerol-3-phosphate dehydrogenase subunit A | - |
| C5C01_RS00255 () | 44792..46051 | + | 1260 | WP_001209957.1 | glycerol-3-phosphate dehydrogenase subunit GlpB | - |
| C5C01_RS00260 () | 46048..47238 | + | 1191 | WP_001000380.1 | anaerobic glycerol-3-phosphate dehydrogenase subunit C | - |
| C5C01_RS00265 () | 47431..48357 | + | 927 | WP_000140558.1 | Recombination-promoting nuclease RpnA | VF |
| C5C01_RS00270 () | 48398..49201 | - | 804 | WP_000992971.1 | 2-keto-3-deoxy-L-rhamnonate aldolase | - |
| C5C01_RS00275 () | 49219..50295 | - | 1077 | Protein_50 | MFS transporter | - |
| C5C01_RS00280 () | 50353..51050 | + | 698 | WP_134801667.1 | IS1 family transposase | - |
| C5C01_RS00285 () | 51060..52082 | + | 1023 | WP_094110609.1 | L-rhamnonate dehydratase | - |
| C5C01_RS00290 () | 52139..52357 | + | 219 | Protein_53 | MFS transporter | - |
| C5C01_RS00295 () | 52373..53070 | - | 698 | Protein_54 | IS1 family transposase | - |
| C5C01_RS00300 () | 53126..53323 | - | 198 | Protein_55 | L-rhamnonate dehydratase | - |
| C5C01_RS00305 () | 53338..53796 | - | 459 | Protein_56 | putative HTH-type transcriptional regulator RhmR | VF |
| C5C01_RS27205 () | 53735..53875 | - | 141 | WP_171547755.1 | hypothetical protein | - |
| C5C01_RS00315 () | 53855..54548 | + | 694 | Protein_58 | IS1 family transposase | - |
| C5C01_RS00320 () | 54563..55159 | + | 597 | Protein_59 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | VF |
| C5C01_RS00325 () | 55163..56130 | + | 968 | Protein_60 | undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase | - |
| C5C01_RS00330 () | 56130..58112 | + | 1983 | Protein_61 | bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA | - |
| C5C01_RS00335 () | 58109..58998 | + | 890 | Protein_62 | 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase | - |
| C5C01_RS00340 () | 58998..60650 | + | 1653 | WP_000844007.1 | lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase | - |
| C5C01_RS00345 () | 60647..60982 | + | 336 | WP_000638028.1 | 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|