MGE detailed information
MGE type: Prophage MGE length: 64068 bp
Accession: NZ_CP026776 Location: 381575..445642 Organism: Shigella flexneri strain 98-3193 Replicon: chromosome
Accession: NZ_CP026776 Location: 381575..445642 Organism: Shigella flexneri strain 98-3193 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P84_RS02135 () | 376782..379211 | + | 2430 | WP_001229400.1 | trimethylamine N-oxide reductase TorZ | - |
| C1P84_RS02140 () | 379376..380346 | - | 971 | Protein_394 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| C1P84_RS02145 () | 380343..381086 | - | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| C1P84_RS02150 () | 381127..381522 | - | 396 | WP_000252980.1 | MAPEG family protein | - |
| C1P84_RS02155 () | 381575..381922 | - | 348 | Protein_397 | DUF72 domain-containing protein | - |
| C1P84_RS02160 () | 382155..383323 | + | 1169 | WP_128599161.1 | IS3 family transposase ISLad1 | Transposase |
| C1P84_RS02165 () | 383360..384048 | + | 689 | Protein_399 | bacteriophage antitermination protein Q | - |
| C1P84_RS02195 () | 385233..386429 | - | 1197 | WP_005096205.1 | IS110 family transposase ISSfl4 | Transposase |
| C1P84_RS02200 () | 386692..387093 | + | 402 | WP_001074423.1 | DNA-packaging protein FI | - |
| C1P84_RS02205 () | 387105..387476 | + | 372 | WP_000753025.1 | head-tail joining protein | - |
| C1P84_RS02210 () | 387463..388053 | + | 591 | WP_000677117.1 | phage tail protein | - |
| C1P84_RS02215 () | 388050..388451 | + | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| C1P84_RS02220 () | 388462..389202 | + | 741 | WP_000211126.1 | phage tail tube protein | - |
| C1P84_RS02225 () | 389261..389647 | + | 387 | WP_000478927.1 | phage minor tail protein G | - |
| C1P84_RS02230 () | 389656..389985 | + | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| C1P84_RS02235 () | 389957..392695 | + | 2739 | WP_039064761.1 | phage tail tape measure protein | - |
| C1P84_RS02240 () | 392695..393024 | + | 330 | WP_000447264.1 | phage tail protein | - |
| C1P84_RS02245 () | 393024..393722 | + | 699 | WP_001152490.1 | phage minor tail protein L | - |
| C1P84_RS02250 () | 393727..394470 | + | 744 | WP_075332705.1 | C40 family peptidase | - |
| C1P84_RS02255 () | 394434..395009 | + | 576 | WP_005105520.1 | tail assembly protein | - |
| C1P84_RS23540 () | 395070..398549 | + | 3480 | Protein_413 | host specificity protein J | - |
| C1P84_RS02265 () | 398617..399216 | + | 600 | WP_001230368.1 | Outer membrane protein X | VF |
| C1P84_RS02270 () | 399280..400695 | + | 1416 | WP_000268794.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C1P84_RS02275 () | 400646..401269 | + | 624 | WP_000930145.1 | DUF4376 domain-containing protein | - |
| C1P84_RS23545 () | 401275..401379 | + | 105 | Protein_417 | tail fiber assembly protein | - |
| C1P84_RS02285 () | 401449..403199 | - | 1751 | Protein_418 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| C1P84_RS02295 () | 403799..404047 | - | 249 | WP_001210039.1 | DinI-like family protein | - |
| C1P84_RS23550 () | 404310..404405 | - | 96 | Protein_420 | hypothetical protein | - |
| C1P84_RS02300 () | 404402..404749 | - | 348 | Protein_421 | hydrolase | - |
| C1P84_RS02305 () | 404776..405972 | - | 1197 | WP_005062405.1 | IS110 family transposase ISSfl4 | Transposase |
| C1P84_RS02310 () | 406199..406417 | - | 219 | Protein_423 | isochorismatase family protein | - |
| C1P84_RS02315 () | 406727..408499 | + | 1773 | WP_001258670.1 | aspartate--tRNA ligase | - |
| C1P84_RS02320 () | 408617..409069 | + | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| C1P84_RS02325 () | 409098..409838 | + | 741 | WP_000907248.1 | putative transcriptional regulatory protein YebC | VF |
| C1P84_RS02330 () | 409873..410394 | + | 522 | WP_000974712.1 | crossover junction endodeoxyribonuclease RuvC | - |
| C1P84_RS02335 () | 410396..410998 | - | 603 | WP_001024930.1 | YebB family permuted papain-like enzyme | - |
| C1P84_RS02340 () | 411067..411132 | + | 66 | WP_001386853.1 | stress response small protein YobI | - |
| C1P84_RS02345 () | 411271..411881 | + | 611 | Protein_430 | Holliday junction branch migration protein RuvA | - |
| C1P84_RS02350 () | 411890..412900 | + | 1011 | WP_000568525.1 | Holliday junction branch migration DNA helicase RuvB | - |
| C1P84_RS02355 () | 413047..413832 | - | 786 | WP_000571470.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| C1P84_RS02360 () | 413829..414584 | - | 756 | WP_000202992.1 | Zinc import ATP-binding protein ZnuC | VF |
| C1P84_RS02365 () | 414663..415595 | + | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| C1P84_RS02370 () | 415611..416933 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| C1P84_RS02375 () | 417053..418024 | + | 972 | WP_000448385.1 | Lipid A biosynthesis myristoyltransferase 1 | VF |
| C1P84_RS02380 () | 418155..419597 | - | 1443 | WP_000044415.1 | pyruvate kinase | - |
| C1P84_RS02385 () | 419725..420594 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| C1P84_RS02390 () | 420931..422406 | + | 1476 | WP_000301736.1 | glucose-6-phosphate dehydrogenase | - |
| C1P84_RS02395 () | 422641..423258 | + | 618 | Protein_440 | dihydroxy-acid dehydratase | - |
| C1P84_RS02400 () | 423314..424011 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| C1P84_RS02405 () | 424027..425229 | + | 1203 | Protein_442 | phosphogluconate dehydratase | - |
| C1P84_RS02410 () | 425266..425907 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| C1P84_RS02415 () | 425963..427141 | - | 1179 | WP_000173488.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| C1P84_RS02420 () | 427323..427565 | + | 243 | Protein_445 | YebG family protein | - |
| C1P84_RS02425 () | 427632..427988 | + | 357 | WP_005062375.1 | protein YebF | - |
| C1P84_RS02430 () | 428315..428974 | + | 660 | WP_000024751.1 | tellurite resistance TerB family protein | - |
| C1P84_RS02435 () | 429217..431243 | + | 2027 | Protein_448 | oligopeptidase B | - |
| C1P84_RS02440 () | 431240..431902 | - | 663 | WP_000944271.1 | exodeoxyribonuclease X | - |
| C1P84_RS02445 () | 431926..432582 | - | 657 | Protein_450 | carbon-nitrogen hydrolase family protein | - |
| C1P84_RS02450 () | 432684..432914 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C1P84_RS02455 () | 433053..433427 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C1P84_RS02460 () | 433431..434303 | + | 873 | Protein_453 | copper homeostasis membrane protein CopD | - |
| C1P84_RS02465 () | 434316..434657 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 434685..434919 | - | 235 | - | - | Antitoxin Detail |
| - | 434815..434918 | + | 104 | - | - | Toxin Detail |
| C1P84_RS23555 () | 435050..436125 | - | 1076 | Protein_455 | phage integrase Arm DNA-binding domain-containing protein | - |
| C1P84_RS02480 () | 436091..436372 | - | 282 | WP_005127484.1 | excisionase | - |
| C1P84_RS02485 () | 436489..437337 | - | 849 | Protein_457 | IS3 family transposase ISSd1 | Transposase |
| C1P84_RS02490 () | 437392..438601 | + | 1210 | Protein_458 | IS3 family transposase IS629 | Transposase |
| C1P84_RS02495 () | 438644..438954 | - | 311 | Protein_459 | IS3 family transposase ISSfl10 | Transposase |
| C1P84_RS02500 () | 439018..439485 | + | 468 | Protein_460 | DNA-binding transcriptional regulator PgrR | - |
| C1P84_RS02505 () | 439822..441435 | + | 1614 | WP_000683016.1 | murein tripeptide ABC transporter substrate-binding protein MppA | - |
| C1P84_RS02510 () | 441486..442517 | - | 1032 | WP_000559908.1 | low conductance mechanosensitive channel YnaI | - |
| C1P84_RS02515 () | 442645..443009 | + | 365 | Protein_463 | IS3 family transposase IS911 | Transposase |
| C1P84_RS02520 () | 443193..444380 | - | 1188 | WP_000937573.1 | IS91 family transposase ISEc37 | Transposase |
| C1P84_RS02525 () | 444380..444745 | - | 366 | WP_000124119.1 | hypothetical protein | - |
| C1P84_RS02530 () | 444830..445642 | + | 813 | Protein_466 | IS3 family transposase ISLad1 | Transposase |
| C1P84_RS02535 () | 445842..446099 | + | 258 | Protein_467 | DUF2534 family protein | - |
| C1P84_RS02540 () | 446149..447099 | - | 951 | WP_001262146.1 | universal stress protein UspE | - |
| C1P84_RS02545 () | 447251..448003 | - | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| C1P84_RS02550 () | 448198..448713 | - | 516 | WP_000945011.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| C1P84_RS02555 () | 448724..448867 | - | 144 | Protein_471 | AbgT family transporter | - |
| C1P84_RS23560 () | 448867..449083 | + | 217 | Protein_472 | LysR family transcriptional regulator | - |
| C1P84_RS02560 () | 449257..450072 | - | 816 | WP_000156575.1 | helix-turn-helix transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|