MGE detailed information
MGE type: Prophage MGE length: 54366 bp
Accession: NZ_CP026776 Location: 1597595..1651960 Organism: Shigella flexneri strain 98-3193 Replicon: chromosome
Accession: NZ_CP026776 Location: 1597595..1651960 Organism: Shigella flexneri strain 98-3193 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P84_RS08625 (1593905) | 1593905..1594582 | - | 678 | WP_000044868.1 | dethiobiotin synthase | - |
| C1P84_RS08630 (1594575) | 1594575..1595330 | - | 756 | WP_000246759.1 | malonyl-ACP O-methyltransferase BioC | - |
| C1P84_RS08635 (1595317) | 1595317..1596471 | - | 1155 | WP_000118810.1 | 8-amino-7-oxononanoate synthase | - |
| C1P84_RS08640 (1596468) | 1596468..1597508 | - | 1041 | WP_000951226.1 | biotin synthase BioB | - |
| C1P84_RS08645 (1597595) | 1597595..1598884 | + | 1290 | WP_005048541.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| C1P84_RS08650 (1598943) | 1598943..1599419 | + | 477 | WP_000767391.1 | kinase inhibitor | - |
| C1P84_RS08655 (1599734) | 1599734..1599814 | + | 81 | Protein_1649 | hypothetical protein | - |
| C1P84_RS08660 (1599824) | 1599824..1599910 | - | 87 | Protein_1650 | transposase | - |
| C1P84_RS08665 (1600002) | 1600002..1601765 | + | 1764 | WP_000801162.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| C1P84_RS23720 (1601835) | 1601835..1601939 | - | 105 | Protein_1652 | tail fiber assembly protein | - |
| C1P84_RS08675 (1601945) | 1601945..1602568 | - | 624 | WP_000930145.1 | DUF4376 domain-containing protein | - |
| C1P84_RS08680 (1602519) | 1602519..1603934 | - | 1416 | WP_000268794.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C1P84_RS08685 (1603998) | 1603998..1604597 | - | 600 | WP_001230368.1 | Outer membrane protein X | VF |
| C1P84_RS08690 (1604665) | 1604665..1608145 | - | 3481 | Protein_1656 | host specificity protein J | - |
| C1P84_RS08695 (1608206) | 1608206..1608781 | - | 576 | WP_005105520.1 | tail assembly protein | - |
| C1P84_RS08700 (1608745) | 1608745..1609488 | - | 744 | WP_075332705.1 | C40 family peptidase | - |
| C1P84_RS08705 (1609493) | 1609493..1610191 | - | 699 | WP_001152490.1 | phage minor tail protein L | - |
| C1P84_RS08710 (1610191) | 1610191..1610520 | - | 330 | WP_000447264.1 | phage tail protein | - |
| C1P84_RS08715 (1610520) | 1610520..1613257 | - | 2738 | Protein_1661 | phage tail tape measure protein | - |
| C1P84_RS08720 (1613229) | 1613229..1613558 | - | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| C1P84_RS08725 (1613567) | 1613567..1613953 | - | 387 | WP_000478927.1 | phage minor tail protein G | - |
| C1P84_RS08730 (1614012) | 1614012..1614752 | - | 741 | WP_000211126.1 | phage tail tube protein | - |
| C1P84_RS08735 (1614763) | 1614763..1615164 | - | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| C1P84_RS08740 (1615161) | 1615161..1615745 | - | 585 | WP_000677140.1 | phage tail protein | - |
| C1P84_RS08745 (1615732) | 1615732..1616108 | - | 377 | Protein_1667 | head-tail joining protein | - |
| C1P84_RS08750 (1616120) | 1616120..1616506 | - | 387 | WP_000201488.1 | DNA-packaging protein FI | - |
| C1P84_RS08755 (1616558) | 1616558..1617586 | - | 1029 | WP_000522637.1 | major capsid protein | - |
| C1P84_RS08760 (1617644) | 1617644..1617991 | - | 348 | WP_000256830.1 | head decoration protein | - |
| C1P84_RS08765 (1618028) | 1618028..1619533 | - | 1506 | WP_001254016.1 | S49 family peptidase | - |
| C1P84_RS08770 (1619523) | 1619523..1621115 | - | 1593 | Protein_1672 | phage portal protein | - |
| C1P84_RS08775 (1621112) | 1621112..1621315 | - | 204 | WP_000259004.1 | gpW family head-tail joining protein | - |
| C1P84_RS08780 (1621299) | 1621299..1623226 | - | 1928 | Protein_1674 | phage terminase large subunit family protein | - |
| C1P84_RS08785 (1623198) | 1623198..1623506 | - | 309 | Protein_1675 | terminase small subunit | - |
| C1P84_RS08790 (1623549) | 1623549..1624588 | - | 1040 | Protein_1676 | IS3 family transposase IS600 | Transposase |
| C1P84_RS08795 (1624644) | 1624644..1625853 | + | 1210 | Protein_1677 | IS3 family transposase IS629 | Transposase |
| C1P84_RS08800 (1625905) | 1625905..1626911 | + | 1007 | Protein_1678 | IS3 family transposase ISSfl10 | Transposase |
| C1P84_RS08805 (1626955) | 1626955..1627134 | - | 180 | Protein_1679 | Rha family transcriptional regulator | - |
| C1P84_RS23335 (1627337) | 1627337..1627804 | - | 468 | WP_000092287.1 | lysis protein | - |
| C1P84_RS08815 (1627801) | 1627801..1628334 | - | 534 | WP_001274722.1 | lysozyme | - |
| C1P84_RS08820 (1628400) | 1628400..1629029 | - | 630 | WP_005094817.1 | hypothetical protein | - |
| C1P84_RS08825 (1629033) | 1629033..1629248 | - | 216 | WP_000839566.1 | class II holin family protein | - |
| C1P84_RS08850 (1630051) | 1630051..1630431 | - | 381 | WP_001204832.1 | antiterminator Q family protein | - |
| C1P84_RS08855 (1630424) | 1630424..1630624 | - | 201 | WP_000111769.1 | protein ninH | - |
| C1P84_RS08860 (1630719) | 1630719..1630976 | - | 258 | WP_001064799.1 | hypothetical protein | - |
| C1P84_RS08865 (1630973) | 1630973..1632364 | - | 1392 | WP_000211324.1 | replicative DNA helicase | - |
| C1P84_RS08870 (1632361) | 1632361..1633239 | - | 879 | WP_000988183.1 | ATP-binding protein | - |
| C1P84_RS08875 (1633250) | 1633250..1634158 | - | 909 | WP_001247840.1 | hypothetical protein | - |
| C1P84_RS08880 (1634145) | 1634145..1634378 | - | 234 | WP_000618004.1 | hypothetical protein | - |
| C1P84_RS23725 (1634375) | 1634375..1634827 | - | 453 | WP_232046050.1 | Rha family transcriptional regulator | - |
| C1P84_RS23730 (1634885) | 1634885..1635343 | - | 459 | WP_000961311.1 | ash family protein | - |
| C1P84_RS08890 (1635356) | 1635356..1635586 | + | 231 | WP_005061113.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C1P84_RS08895 (1635576) | 1635576..1635884 | + | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| C1P84_RS08900 (1635926) | 1635926..1636102 | - | 177 | WP_001252556.1 | NinE family protein | - |
| C1P84_RS08905 (1636099) | 1636099..1636509 | - | 411 | WP_000814621.1 | recombination protein NinB | - |
| C1P84_RS08910 (1636506) | 1636506..1636784 | - | 279 | WP_005061104.1 | hypothetical protein | - |
| C1P84_RS08915 (1636859) | 1636859..1637053 | - | 195 | Protein_1698 | hypothetical protein | - |
| C1P84_RS23735 (1638300) | 1638300..1638374 | + | 75 | Protein_1700 | hypothetical protein | - |
| C1P84_RS08925 (1638385) | 1638385..1638993 | + | 609 | Protein_1701 | PBSX family phage terminase large subunit | - |
| C1P84_RS08930 (1639084) | 1639084..1640312 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| C1P84_RS08935 (1640324) | 1640324..1641057 | + | 734 | Protein_1703 | PBSX family phage terminase large subunit | - |
| C1P84_RS08940 (1641057) | 1641057..1642523 | + | 1467 | WP_000113500.1 | DUF1073 domain-containing protein | - |
| C1P84_RS08945 (1642414) | 1642414..1643157 | + | 744 | WP_000184977.1 | phage minor head protein | - |
| C1P84_RS08950 (1643161) | 1643161..1644381 | + | 1221 | WP_000873151.1 | DUF2213 domain-containing protein | - |
| C1P84_RS08955 (1644385) | 1644385..1644874 | + | 490 | Protein_1707 | hypothetical protein | - |
| C1P84_RS08960 (1644886) | 1644886..1645827 | + | 942 | WP_000627469.1 | DUF2184 domain-containing protein | - |
| C1P84_RS23345 (1645824) | 1645824..1646099 | - | 276 | WP_011069283.1 | hypothetical protein | - |
| C1P84_RS08975 (1647332) | 1647332..1648963 | - | 1632 | Protein_1711 | Mu transposase C-terminal domain-containing protein | - |
| C1P84_RS08980 (1648938) | 1648938..1649174 | - | 237 | WP_014532185.1 | helix-turn-helix transcriptional regulator | - |
| C1P84_RS08985 (1649346) | 1649346..1649855 | + | 510 | WP_000833599.1 | DNA-binding protein | - |
| C1P84_RS08990 (1650193) | 1650193..1650534 | + | 342 | Protein_1714 | response regulator | - |
| C1P84_RS08995 (1650575) | 1650575..1651960 | - | 1386 | WP_000955062.1 | anaerobic C4-dicarboxylate transporter DcuC | - |
| C1P84_RS09000 (1652548) | 1652548..1653108 | + | 561 | WP_005049488.1 | lipid IV(A) palmitoyltransferase PagP | - |
| C1P84_RS09005 (1653283) | 1653283..1653492 | + | 210 | WP_000034825.1 | transcription antiterminator/RNA stability regulator CspE | - |
| C1P84_RS09010 (1653546) | 1653546..1653929 | - | 384 | WP_000939741.1 | fluoride efflux transporter CrcB | - |
| C1P84_RS09015 (1654022) | 1654022..1654809 | + | 788 | Protein_1719 | deaminated glutathione amidase | - |
| C1P84_RS09020 (1654938) | 1654938..1655141 | + | 204 | WP_000503931.1 | twin-arginine translocase subunit TatE | - |
| C1P84_RS09025 (1655242) | 1655242..1656207 | - | 966 | WP_000042632.1 | lipoyl synthase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|