MGE detailed information
MGE type: Prophage MGE length: 13684 bp
Accession: NZ_CP026768 Location: 847193..860876 Organism: Shigella flexneri Y strain 93-3063 Replicon: chromosome
Accession: NZ_CP026768 Location: 847193..860876 Organism: Shigella flexneri Y strain 93-3063 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P87_RS04440 (843706) | 843706..844452 | + | 747 | WP_005050098.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| C1P87_RS04445 (844541) | 844541..845227 | + | 687 | WP_005127032.1 | DNA-binding transcriptional regulator rspR | - |
| C1P87_RS04450 (845405) | 845405..845608 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C1P87_RS04455 (845644) | 845644..847104 | - | 1461 | WP_000527804.1 | mannitol dehydrogenase family protein | - |
| C1P87_RS04460 (847193) | 847193..848212 | - | 1020 | Protein_857 | MHS family MFS transporter YdfJ | - |
| C1P87_RS04465 (848274) | 848274..849430 | + | 1157 | WP_094096548.1 | IS3 family transposase IS600 | Transposase |
| C1P87_RS04470 (849455) | 849455..849634 | - | 180 | WP_000372594.1 | class II holin family protein | - |
| C1P87_RS26035 (849784) | 849784..849945 | - | 162 | WP_001323614.1 | hypothetical protein | - |
| C1P87_RS04475 (849945) | 849945..850130 | - | 186 | Protein_861 | DUF1737 domain-containing protein | - |
| C1P87_RS04480 (850390) | 850390..850725 | + | 336 | WP_000871291.1 | anti-adapter protein IraM | - |
| C1P87_RS04485 (851006) | 851006..851114 | - | 109 | Protein_863 | DUF3927 family protein | - |
| C1P87_RS04505 (852035) | 852035..852856 | - | 822 | WP_000762884.1 | antitermination protein | - |
| C1P87_RS04510 (852871) | 852871..853227 | - | 357 | WP_000904111.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C1P87_RS04515 (853240) | 853240..854289 | - | 1050 | WP_001265249.1 | DUF968 domain-containing protein | - |
| C1P87_RS04520 (854291) | 854291..854569 | - | 279 | Protein_867 | hypothetical protein | - |
| C1P87_RS04525 (854636) | 854636..854887 | - | 252 | WP_000980987.1 | protein Rem | - |
| C1P87_RS04530 (855105) | 855105..855260 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C1P87_RS04535 (855332) | 855332..855619 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| C1P87_RS04540 (855619) | 855619..855858 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| C1P87_RS04545 (855883) | 855883..856188 | + | 306 | WP_071818640.1 | hypothetical protein | - |
| C1P87_RS04550 (856185) | 856185..857063 | - | 879 | Protein_873 | IS3 family transposase IS600 | Transposase |
| C1P87_RS04560 (857835) | 857835..858263 | + | 429 | Protein_875 | Type 1 fimbrin D-mannose specific adhesin | VF |
| C1P87_RS04565 (858597) | 858597..860876 | + | 2280 | WP_000726665.1 | acid resistance putative oxidoreductase YdeP | - |
| C1P87_RS04570 (861124) | 861124..861327 | + | 204 | WP_000543383.1 | two-component system connector SafA | - |
| C1P87_RS04575 (861395) | 861395..862156 | + | 762 | WP_000060475.1 | acid stress response transcriptional regulator YdeO | - |
| C1P87_RS04580 (862409) | 862409..862555 | + | 147 | Protein_879 | sulfatase | - |
| C1P87_RS04590 (863322) | 863322..863801 | - | 480 | Protein_881 | cupin domain-containing protein | - |
| C1P87_RS04595 (864117) | 864117..864881 | + | 765 | WP_000692136.1 | electron transfer flavoprotein | - |
| C1P87_RS04600 (864901) | 864901..865839 | + | 939 | Protein_883 | electron transfer flavoprotein subunit alpha | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Shigella flexneri 5a str. M90T | Prophage | TA120372 | NZ_CP037923 | 1629251..1643278 | 0.003 |