MGE detailed information
MGE type: Prophage MGE length: 59315 bp
Accession: NZ_CP026766 Location: 410089..469403 Organism: Shigella boydii strain 59-248 Replicon: chromosome
Accession: NZ_CP026766 Location: 410089..469403 Organism: Shigella boydii strain 59-248 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P58_RS02190 () | 406473..407834 | + | 1362 | WP_000983897.1 | bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF | - |
| C1P58_RS02195 () | 407846..409039 | + | 1194 | WP_000209504.1 | tryptophan synthase subunit beta | - |
| C1P58_RS02200 () | 409039..409845 | + | 807 | WP_000443093.1 | tryptophan synthase subunit alpha | - |
| C1P58_RS02205 () | 410089..410786 | - | 698 | Protein_420 | IS1 family transposase IS1X2 | Transposase |
| C1P58_RS02210 () | 410897..411022 | - | 126 | Protein_421 | outer membrane protein OmpW | - |
| C1P58_RS26130 () | 411326..411496 | - | 171 | WP_000251936.1 | hypothetical protein | - |
| C1P58_RS02215 () | 411611..411880 | - | 270 | WP_000937498.1 | tail fiber assembly protein | - |
| C1P58_RS02220 () | 411937..412605 | + | 669 | WP_134802264.1 | class I SAM-dependent methyltransferase | - |
| C1P58_RS02230 () | 412660..413037 | - | 378 | Protein_425 | tail fiber assembly protein | - |
| C1P58_RS02245 () | 414493..414957 | - | 465 | Protein_427 | hypothetical protein | - |
| C1P58_RS02255 () | 416213..417382 | - | 1170 | WP_073691591.1 | prophage tail fiber N-terminal domain-containing protein | - |
| C1P58_RS02260 () | 417534..418133 | - | 600 | WP_001228318.1 | Outer membrane protein X | VF |
| C1P58_RS02265 () | 418201..421674 | - | 3474 | WP_134802266.1 | host specificity protein J | - |
| C1P58_RS02270 () | 421915..422595 | - | 681 | WP_171765892.1 | tail assembly protein | - |
| C1P58_RS02275 () | 422493..423236 | - | 744 | WP_001420465.1 | C40 family peptidase | - |
| C1P58_RS02280 () | 423247..423945 | - | 699 | WP_001355911.1 | phage minor tail protein L | - |
| C1P58_RS02285 () | 423945..424274 | - | 330 | WP_021525324.1 | phage tail protein | - |
| C1P58_RS02290 () | 424271..426844 | - | 2574 | WP_073690902.1 | phage tail tape measure protein | - |
| C1P58_RS02295 () | 426825..427238 | - | 414 | WP_000533402.1 | phage tail assembly protein T | - |
| C1P58_RS02300 () | 427265..427696 | - | 432 | WP_000479095.1 | phage minor tail protein G | - |
| C1P58_RS02305 () | 427710..428462 | - | 753 | WP_000235110.1 | phage tail protein | - |
| C1P58_RS02310 () | 428470..428865 | - | 396 | WP_000683079.1 | phage minor tail U family protein | - |
| C1P58_RS02315 () | 428862..429395 | - | 534 | WP_000974979.1 | phage tail protein | - |
| C1P58_RS02320 () | 429411..429764 | - | 354 | WP_134802267.1 | phage tail protein | - |
| C1P58_RS02325 () | 429757..430140 | - | 384 | WP_000201501.1 | DNA-packaging protein FI | - |
| C1P58_RS02330 () | 430192..431220 | - | 1029 | WP_134802268.1 | major capsid protein | - |
| C1P58_RS02335 () | 431278..431625 | - | 348 | WP_000256823.1 | head decoration protein | - |
| C1P58_RS02340 () | 431662..433167 | - | 1506 | WP_134802269.1 | S49 family peptidase | - |
| C1P58_RS02345 () | 433157..434749 | - | 1593 | WP_000831818.1 | phage portal protein | - |
| C1P58_RS02350 () | 434746..434952 | - | 207 | WP_000259002.1 | head-tail joining protein | - |
| C1P58_RS02355 () | 434936..436864 | - | 1929 | WP_000622379.1 | phage terminase large subunit family protein | - |
| C1P58_RS02360 () | 436836..437384 | - | 549 | WP_073690905.1 | terminase small subunit | - |
| C1P58_RS02365 () | 437795..438862 | + | 1068 | WP_000077906.1 | beta family protein | - |
| C1P58_RS02370 () | 438804..439424 | - | 621 | WP_000654791.1 | sce7726 family protein | - |
| C1P58_RS02375 () | 439841..440299 | - | 459 | WP_000091923.1 | lysis protein | - |
| C1P58_RS02380 () | 440296..440829 | - | 534 | WP_134802270.1 | lysozyme | - |
| C1P58_RS02385 () | 440885..441199 | - | 315 | WP_000193273.1 | YdfR family protein | - |
| C1P58_RS02390 () | 441204..441419 | - | 216 | WP_000284510.1 | class II holin family protein | - |
| C1P58_RS02395 () | 441570..443426 | - | 1857 | WP_000874529.1 | DUF1737 domain-containing protein | - |
| C1P58_RS02420 () | 444692..445750 | - | 1059 | WP_134802271.1 | site-specific DNA-methyltransferase | - |
| C1P58_RS02425 () | 445858..446098 | - | 241 | Protein_459 | hypothetical protein | - |
| C1P58_RS02430 () | 446323..447144 | - | 822 | WP_000762880.1 | antitermination protein | - |
| C1P58_RS02435 () | 447141..447515 | - | 375 | WP_000904114.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C1P58_RS02440 () | 447528..448574 | - | 1047 | WP_073691454.1 | DUF968 domain-containing protein | - |
| C1P58_RS02445 () | 448576..448854 | - | 279 | WP_001515373.1 | hypothetical protein | - |
| C1P58_RS02450 () | 448921..449172 | - | 252 | WP_000980987.1 | hypothetical protein | - |
| C1P58_RS02455 () | 449389..449544 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - () | 449556..449614 | + | 59 | - | - | Antitoxin Detail |
| C1P58_RS02470 () | 450287..450982 | + | 696 | WP_073832089.1 | hypothetical protein | - |
| C1P58_RS02475 () | 450995..451648 | + | 654 | WP_077897731.1 | class I SAM-dependent methyltransferase | - |
| C1P58_RS02480 () | 451964..452864 | - | 901 | Protein_468 | SMEK domain-containing protein | - |
| C1P58_RS02485 () | 453117..453539 | - | 423 | WP_001151218.1 | DUF977 family protein | - |
| C1P58_RS02490 () | 453580..454545 | - | 966 | WP_000054487.1 | hypothetical protein | - |
| C1P58_RS02495 () | 454526..455047 | - | 522 | WP_000705349.1 | hypothetical protein | - |
| C1P58_RS02500 () | 455031..455258 | - | 228 | WP_000476993.1 | transcriptional regulator | - |
| C1P58_RS02505 () | 455336..455743 | + | 408 | WP_001003382.1 | helix-turn-helix domain-containing protein | - |
| C1P58_RS02510 () | 455936..456091 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| C1P58_RS02515 () | 456251..456469 | + | 219 | WP_001171930.1 | hypothetical protein | - |
| C1P58_RS02530 () | 457077..458305 | + | 1229 | WP_171765891.1 | IS3 family transposase IS2 | Transposase |
| C1P58_RS02535 () | 458374..458562 | + | 189 | WP_032265158.1 | cell division inhibition protein DicB | - |
| C1P58_RS02540 () | 458559..458750 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| C1P58_RS02545 () | 458843..459691 | + | 849 | Protein_479 | exonuclease | - |
| C1P58_RS02550 () | 459756..460912 | + | 1157 | WP_094096479.1 | IS3 family transposase IS600 | Transposase |
| C1P58_RS02555 () | 460956..461444 | + | 489 | Protein_481 | exonuclease | - |
| C1P58_RS02560 () | 461496..462669 | + | 1174 | WP_134802273.1 | IS3 family transposase ISSd1 | Transposase |
| C1P58_RS02565 () | 462690..463847 | + | 1158 | Protein_483 | 3'-5' exoribonuclease | - |
| C1P58_RS02570 () | 463912..464160 | + | 249 | WP_000113189.1 | excisionase | - |
| C1P58_RS02575 () | 464138..465268 | + | 1131 | WP_000113700.1 | hypothetical protein ; Integrase | Integrase |
| C1P58_RS02580 () | 465314..465952 | - | 639 | WP_073691382.1 | outer membrane protein OmpW | - |
| C1P58_RS02585 () | 466192..466281 | + | 90 | Protein_487 | YkgJ family cysteine cluster protein | - |
| C1P58_RS02590 () | 466309..467052 | + | 744 | WP_000028541.1 | envelope biogenesis factor ElyC | - |
| C1P58_RS02595 () | 467082..467621 | + | 540 | WP_000808667.1 | septation protein A | - |
| C1P58_RS02600 () | 467726..468124 | + | 399 | WP_000108160.1 | acyl-CoA thioester hydrolase YciA | - |
| C1P58_RS02605 () | 468164..468892 | - | 729 | WP_164832846.1 | TonB system transport protein TonB | - |
| C1P58_RS02610 () | 469107..469403 | + | 297 | WP_000967595.1 | YciI family protein | - |
| C1P58_RS02615 () | 469703..470956 | + | 1254 | WP_005031395.1 | voltage-gated potassium channel protein | - |
| C1P58_RS02620 () | 471011..471184 | - | 174 | WP_001309467.1 | YciY family protein | - |
| C1P58_RS02625 () | 471327..472787 | + | 1461 | WP_000214508.1 | cardiolipin synthase | - |
| C1P58_RS02630 () | 472822..473151 | + | 330 | WP_000366959.1 | HI1450 family dsDNA-mimic protein | - |
| C1P58_RS02635 () | 473204..474208 | - | 1005 | WP_000994889.1 | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|