MGE detailed information
MGE type: Prophage MGE length: 59489 bp
Accession: NZ_CP026765 Location: 2350352..2409840 Organism: Shigella flexneri strain 04-3145 Replicon: chromosome
Accession: NZ_CP026765 Location: 2350352..2409840 Organism: Shigella flexneri strain 04-3145 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P85_RS12635 () | 2345776..2347470 | - | 1695 | Protein_2373 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
| C1P85_RS12640 () | 2347641..2347823 | - | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| C1P85_RS12645 () | 2347902..2348819 | - | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| C1P85_RS12650 () | 2348992..2349912 | + | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| C1P85_RS12655 () | 2349901..2350371 | - | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| C1P85_RS12660 () | 2350352..2351770 | - | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| C1P85_RS12665 () | 2351837..2352377 | - | 541 | Protein_2379 | phosphohydrolase | - |
| C1P85_RS12670 () | 2352417..2352674 | - | 258 | WP_032155863.1 | cell division protein DrpB | - |
| C1P85_RS12680 () | 2353888..2354652 | + | 765 | Protein_2382 | porin | - |
| C1P85_RS12690 () | 2355983..2356162 | + | 180 | Protein_2384 | porin | - |
| C1P85_RS12695 () | 2356790..2357487 | + | 698 | WP_232111816.1 | IS1 family transposase IS1X2 | Transposase |
| C1P85_RS12700 () | 2357499..2358446 | - | 948 | Protein_2386 | two-component system sensor histidine kinase HprS | - |
| C1P85_RS12705 () | 2358446..2359117 | - | 672 | WP_001347103.1 | putative transcriptional regulatory protein YedW | VF |
| C1P85_RS12710 () | 2359250..2359663 | + | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| C1P85_RS12715 () | 2359772..2360776 | + | 1005 | Protein_2389 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| C1P85_RS12720 () | 2360777..2361412 | + | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| C1P85_RS12725 () | 2361670..2362320 | + | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| C1P85_RS12735 () | 2363398..2363667 | - | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| C1P85_RS12740 () | 2363724..2364392 | + | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| C1P85_RS12745 () | 2364708..2366350 | + | 1643 | Protein_2394 | E3 ubiquitin-protein ligase ipaH3 | VF |
| C1P85_RS12755 () | 2366530..2367009 | - | 480 | Protein_2395 | DUF4376 domain-containing protein | - |
| C1P85_RS12760 () | 2367050..2367907 | - | 858 | Protein_2396 | IS3 family transposase IS600 | Transposase |
| C1P85_RS12765 () | 2367965..2368662 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| C1P85_RS12770 () | 2368674..2368865 | - | 192 | Protein_2398 | IS66 family transposase ISSfl3 | Transposase |
| C1P85_RS12775 () | 2368964..2369179 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| C1P85_RS12805 () | 2369975..2370663 | - | 689 | Protein_2400 | bacteriophage antitermination protein Q | - |
| C1P85_RS12810 () | 2370660..2371025 | - | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| C1P85_RS12815 () | 2371026..2372084 | - | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| C1P85_RS12820 () | 2372086..2372364 | - | 279 | WP_011069426.1 | hypothetical protein | - |
| C1P85_RS12830 () | 2372532..2372687 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 2372699..2372757 | + | 59 | - | - | Antitoxin Detail |
| C1P85_RS12845 () | 2373339..2373755 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| C1P85_RS12850 () | 2373782..2373922 | + | 141 | Protein_2406 | DUF4224 domain-containing protein | - |
| C1P85_RS12855 () | 2373922..2374972 | + | 1051 | Protein_2407 | Tyrosine recombinase XerC ; Integrase | Integrase |
| C1P85_RS12865 () | 2375183..2375980 | + | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| C1P85_RS12875 () | 2376318..2377580 | + | 1263 | Protein_2409 | Prophage integrase IntA ; Integrase | Integrase |
| C1P85_RS12885 () | 2378911..2379417 | + | 507 | Protein_2411 | MFS transporter | - |
| C1P85_RS12890 () | 2379482..2380681 | + | 1200 | Protein_2412 | IS3 family transposase IS600 | Transposase |
| C1P85_RS12895 () | 2380682..2380888 | + | 207 | WP_000466572.1 | hypothetical protein | - |
| C1P85_RS12900 () | 2380990..2382444 | + | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| C1P85_RS12905 () | 2382787..2383503 | + | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| C1P85_RS12915 () | 2384135..2385760 | - | 1626 | Protein_2416 | toxic metabolite efflux MATE transporter YeeO | - |
| C1P85_RS12925 () | 2385878..2386828 | - | 951 | WP_128882093.1 | HTH-type transcriptional regulator Cbl | - |
| C1P85_RS12930 () | 2386930..2387847 | - | 918 | WP_001011445.1 | nitrogen assimilation transcriptional regulator NAC | - |
| C1P85_RS12940 () | 2388306..2389241 | - | 936 | WP_000986346.1 | L,D-transpeptidase | - |
| C1P85_RS12945 () | 2389303..2390382 | - | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| C1P85_RS12950 () | 2390394..2391137 | - | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| C1P85_RS12955 () | 2391134..2391637 | - | 504 | WP_001272809.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| C1P85_RS12975 () | 2393054..2394249 | + | 1196 | Protein_2424 | IS3 family transposase | - |
| C1P85_RS12980 () | 2394627..2394773 | - | 147 | Protein_2425 | transposase domain-containing protein | - |
| C1P85_RS12985 () | 2394875..2395009 | + | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| C1P85_RS12990 () | 2395110..2395439 | - | 330 | WP_005107963.1 | DUF496 family protein | - |
| C1P85_RS12995 () | 2395611..2395895 | - | 285 | Protein_2428 | hypothetical protein | - |
| C1P85_RS13000 () | 2395980..2396654 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P85_RS13005 () | 2396651..2397001 | + | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P85_RS13010 () | 2396998..2397903 | + | 906 | Protein_2431 | IS66 family transposase ISSfl3 | Transposase |
| C1P85_RS13015 () | 2397992..2399220 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| C1P85_RS13020 () | 2399233..2399520 | + | 288 | Protein_2433 | transposase | - |
| C1P85_RS13025 () | 2399585..2400741 | + | 1157 | WP_128599137.1 | IS3 family transposase IS600 | Transposase |
| C1P85_RS13035 () | 2400785..2401201 | + | 417 | Protein_2435 | IS66 family transposase ISSfl3 | Transposase |
| C1P85_RS13040 () | 2401231..2401584 | + | 354 | Protein_2436 | hypothetical protein ; Integrase | Integrase |
| C1P85_RS13050 () | 2401636..2402022 | - | 387 | Protein_2437 | IS3 family transposase ISLad1 | Transposase |
| C1P85_RS13055 () | 2402056..2403657 | - | 1602 | WP_011110603.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P85_RS24075 () | 2403654..2403833 | - | 180 | Protein_2439 | IS66 family insertion sequence element accessory protein TnpB | - |
| C1P85_RS13065 () | 2403889..2405098 | + | 1210 | Protein_2440 | IS3 family transposase IS629 | Transposase |
| C1P85_RS13070 () | 2405143..2405313 | - | 171 | Protein_2441 | IS66 family transposase ISSfl3 | Transposase |
| C1P85_RS13075 () | 2405310..2405984 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| C1P85_RS13085 () | 2406066..2406902 | - | 837 | Protein_2443 | Prophage integrase IntA ; Integrase | Integrase |
| C1P85_RS13090 () | 2407084..2408507 | + | 1424 | Protein_2444 | exodeoxyribonuclease I | - |
| C1P85_RS13095 () | 2408550..2408777 | - | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| C1P85_RS13100 () | 2408791..2409849 | - | 1059 | WP_000492293.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| C1P85_RS13105 () | 2410028..2411386 | - | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| C1P85_RS13110 () | 2411376..2411438 | - | 63 | WP_097433929.1 | membrane protein YoeI | - |
| C1P85_RS13115 () | 2411568..2412581 | - | 1014 | WP_025755805.1 | LysR substrate-binding domain-containing protein | - |
| C1P85_RS13120 () | 2412627..2413451 | - | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| C1P85_RS13125 () | 2413534..2413788 | - | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| C1P85_RS13135 () | 2414541..2414813 | - | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|