MGE detailed information
MGE type: Prophage MGE length: 62193 bp
Accession: NZ_CP026765 Location: 1704253..1766445 Organism: Shigella flexneri strain 04-3145 Replicon: chromosome
Accession: NZ_CP026765 Location: 1704253..1766445 Organism: Shigella flexneri strain 04-3145 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P85_RS09055 () | 1699894..1700955 | + | 1062 | WP_000138742.1 | YcjF family protein | - |
| C1P85_RS09060 () | 1701103..1702644 | + | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
| C1P85_RS09065 () | 1702688..1703194 | - | 507 | WP_000084387.1 | thiol peroxidase | - |
| C1P85_RS09070 () | 1703313..1704278 | + | 966 | WP_005049759.1 | L-Ala-D/L-Glu epimerase | - |
| C1P85_RS09075 () | 1704253..1704981 | - | 729 | WP_128881938.1 | murein tripeptide amidase MpaA | - |
| C1P85_RS09080 () | 1705272..1705910 | - | 639 | WP_128881937.1 | SDR family oxidoreductase | - |
| C1P85_RS09085 () | 1705928..1706509 | - | 582 | Protein_1691 | alpha/beta hydrolase | - |
| C1P85_RS09090 () | 1706738..1707934 | + | 1197 | WP_005107451.1 | IS110 family transposase ISSfl4 | Transposase |
| C1P85_RS09095 () | 1707961..1708973 | - | 1013 | Protein_1693 | IS3 family transposase IS2 | Transposase |
| C1P85_RS24350 () | 1709497..1709666 | + | 170 | Protein_1694 | hypothetical protein | - |
| C1P85_RS09105 () | 1709812..1710558 | + | 747 | WP_000788996.1 | ATP-binding protein | - |
| C1P85_RS09110 () | 1710573..1710995 | + | 423 | WP_001118167.1 | DUF977 family protein | - |
| C1P85_RS09115 () | 1711053..1711409 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| C1P85_RS09120 () | 1711502..1711720 | + | 219 | WP_000256998.1 | DUF4014 family protein | - |
| C1P85_RS09125 () | 1711722..1712087 | + | 366 | WP_001229298.1 | HNH endonuclease signature motif containing protein | - |
| C1P85_RS09130 () | 1712084..1712749 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| C1P85_RS09135 () | 1712749..1713114 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - | 1713499..1713557 | - | 59 | - | - | Antitoxin Detail |
| C1P85_RS09140 () | 1713569..1713724 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| C1P85_RS09155 () | 1715061..1715660 | + | 600 | WP_000940329.1 | DUF1367 family protein | - |
| C1P85_RS09160 () | 1715660..1715950 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| C1P85_RS09165 () | 1715947..1716501 | + | 555 | WP_000640143.1 | DUF1133 family protein | - |
| C1P85_RS09170 () | 1716654..1716827 | + | 174 | WP_000504450.1 | hypothetical protein | - |
| C1P85_RS09175 () | 1716889..1718045 | + | 1157 | WP_134797302.1 | IS3 family transposase IS600 | Transposase |
| C1P85_RS09180 () | 1718038..1718598 | + | 561 | WP_072075205.1 | ORF6N domain-containing protein | - |
| C1P85_RS09210 () | 1719232..1720836 | + | 1605 | WP_128882120.1 | Transposase from transposon Tn916 ; Integrase | Integrase |
| C1P85_RS09215 () | 1721720..1721899 | + | 180 | Protein_1711 | Rha family transcriptional regulator | - |
| C1P85_RS09220 () | 1721958..1722655 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| C1P85_RS09225 () | 1722671..1723576 | + | 906 | Protein_1713 | IS3 family transposase IS600 | Transposase |
| C1P85_RS24000 () | 1723604..1723972 | + | 369 | WP_011069357.1 | hypothetical protein | - |
| C1P85_RS09240 () | 1723996..1724540 | + | 545 | Protein_1715 | tail fiber assembly protein | - |
| C1P85_RS09245 () | 1724564..1725749 | + | 1186 | Protein_1716 | prophage tail fiber N-terminal domain-containing protein | - |
| C1P85_RS09250 () | 1725700..1726323 | + | 624 | WP_064194761.1 | DUF4376 domain-containing protein | - |
| C1P85_RS09255 () | 1726524..1727381 | - | 858 | WP_000968134.1 | Manganese transport system membrane protein MntB | ARG |
| C1P85_RS09260 () | 1727378..1728235 | - | 858 | WP_001101728.1 | Manganese transport system membrane protein MntB | ARG |
| C1P85_RS09265 () | 1728232..1729059 | - | 828 | WP_000983722.1 | Iron(3+)-hydroxamate import ATP-binding protein FhuC | VF |
| C1P85_RS09270 () | 1729059..1729973 | - | 915 | WP_000555620.1 | Putative metal ABC transporter substrate-binding protein Hpf | VF |
| C1P85_RS09275 () | 1730435..1731076 | - | 642 | Protein_1722 | Putative defective protein IntQ ; Integrase | Integrase |
| C1P85_RS09280 () | 1731130..1731827 | + | 698 | WP_225620329.1 | IS1 family transposase IS1X2 | Transposase |
| C1P85_RS09285 () | 1731844..1732014 | - | 171 | Protein_1724 | DUF3596 domain-containing protein | - |
| C1P85_RS09290 () | 1732016..1732183 | - | 168 | WP_005049823.1 | excisionase family protein | - |
| C1P85_RS09295 () | 1732231..1733285 | - | 1055 | Protein_1726 | IS3 family transposase IS629 | Transposase |
| C1P85_RS09300 () | 1733311..1734471 | - | 1161 | WP_005107813.1 | AAA family ATPase | - |
| C1P85_RS09310 () | 1735681..1735989 | - | 309 | WP_232046049.1 | host-nuclease inhibitor Gam family protein | - |
| C1P85_RS09315 () | 1736088..1737244 | + | 1157 | WP_094190485.1 | IS3 family transposase IS600 | Transposase |
| C1P85_RS09320 () | 1737301..1738716 | - | 1416 | Protein_1731 | exodeoxyribonuclease VIII | - |
| C1P85_RS09330 () | 1739595..1739867 | - | 273 | WP_024260426.1 | hypothetical protein | - |
| C1P85_RS09335 () | 1739942..1740112 | - | 171 | WP_001359121.1 | YdaE family protein | - |
| C1P85_RS09340 () | 1740112..1740333 | - | 222 | WP_000560226.1 | killing protein KilR | - |
| C1P85_RS09350 () | 1741658..1742567 | - | 910 | Protein_1737 | Rha family transcriptional regulator | - |
| C1P85_RS24005 () | 1743185..1743565 | + | 381 | Protein_1738 | IS66 family transposase ISSfl3 | Transposase |
| C1P85_RS24010 () | 1743567..1743734 | + | 168 | Protein_1739 | IS66 family transposase ISSfl3 | Transposase |
| C1P85_RS09370 () | 1743685..1744308 | + | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| C1P85_RS09380 () | 1744488..1746203 | - | 1716 | WP_128636480.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| C1P85_RS09390 () | 1746945..1747391 | + | 447 | Protein_1742 | metallophosphoesterase | - |
| C1P85_RS09395 () | 1747456..1748612 | + | 1157 | WP_094081550.1 | IS3 family transposase IS600 | Transposase |
| C1P85_RS09400 () | 1748656..1748844 | + | 189 | Protein_1744 | serine/threonine-protein phosphatase | - |
| C1P85_RS09405 () | 1748869..1749060 | - | 192 | WP_001296140.1 | YebW family protein | - |
| C1P85_RS09410 () | 1749165..1749401 | - | 237 | WP_001295499.1 | YebV family protein | - |
| C1P85_RS09415 () | 1749519..1750958 | - | 1440 | WP_000057029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C1P85_RS09420 () | 1751038..1753658 | - | 2621 | Protein_1748 | hypothetical protein | VF |
| C1P85_RS09425 () | 1753627..1754910 | - | 1284 | Protein_1749 | membrane integrity lipid transport subunit YebS | - |
| C1P85_RS09430 () | 1755040..1755537 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| C1P85_RS09435 () | 1755634..1756332 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| C1P85_RS09440 () | 1756352..1758400 | + | 2049 | WP_128882070.1 | carboxy terminal-processing peptidase | - |
| C1P85_RS09445 () | 1758592..1759473 | + | 882 | WP_000984517.1 | protease HtpX | - |
| C1P85_RS09450 () | 1759519..1760892 | - | 1374 | WP_001127218.1 | MFS transporter | - |
| C1P85_RS09455 () | 1761069..1761860 | + | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| C1P85_RS09460 () | 1762003..1762242 | - | 240 | WP_001211010.1 | YobH family protein | - |
| C1P85_RS09465 () | 1762401..1762544 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| C1P85_RS09470 () | 1762619..1762906 | + | 288 | WP_001006860.1 | YebO family protein | - |
| C1P85_RS09475 () | 1763576..1763719 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| C1P85_RS09480 () | 1763732..1763941 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| C1P85_RS09485 () | 1764107..1764916 | + | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| C1P85_RS09490 () | 1764913..1765479 | - | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| C1P85_RS24710 () | 1765476..1765598 | - | 123 | WP_000547919.1 | hypothetical protein | - |
| C1P85_RS09500 () | 1766668..1767144 | - | 477 | WP_000156246.1 | DUF986 family protein | - |
| C1P85_RS09505 () | 1767199..1768050 | - | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| C1P85_RS09510 () | 1768063..1768863 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| C1P85_RS09515 () | 1768926..1769897 | - | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
| C1P85_RS24715 () | 1770214..1770372 | + | 159 | WP_001327808.1 | protein YoaL | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|