MGE detailed information
MGE type: Prophage MGE length: 60113 bp
Accession: NZ_CP026765 Location: 1045348..1105460 Organism: Shigella flexneri strain 04-3145 Replicon: chromosome
Accession: NZ_CP026765 Location: 1045348..1105460 Organism: Shigella flexneri strain 04-3145 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P85_RS05555 (1040354) | 1040354..1041787 | - | 1434 | WP_001036463.1 | anion permease | - |
| C1P85_RS05560 (1041863) | 1041863..1042915 | - | 1053 | WP_105078295.1 | 4-oxalomesaconate tautomerase | - |
| C1P85_RS05565 (1043099) | 1043099..1044052 | + | 954 | Protein_1005 | LysR family transcriptional regulator | - |
| C1P85_RS05570 (1044093) | 1044093..1045088 | - | 996 | WP_000815445.1 | 6-phosphogluconolactonase | - |
| C1P85_RS05575 (1045390) | 1045390..1045479 | - | 90 | Protein_1007 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| C1P85_RS05580 (1045970) | 1045970..1047796 | + | 1827 | WP_011110560.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| C1P85_RS05590 (1047976) | 1047976..1048593 | - | 618 | WP_005061679.1 | DUF4376 domain-containing protein | - |
| C1P85_RS05595 (1048659) | 1048659..1049815 | + | 1157 | Protein_1010 | IS3 family transposase IS600 | Transposase |
| C1P85_RS05600 (1049860) | 1049860..1050059 | + | 200 | Protein_1011 | hypothetical protein | - |
| C1P85_RS05605 (1050159) | 1050159..1050785 | + | 627 | Protein_1012 | exonuclease | - |
| C1P85_RS05610 (1050828) | 1050828..1051550 | - | 723 | Protein_1013 | IS3 family transposase ISSfl10 | Transposase |
| C1P85_RS05615 (1051622) | 1051622..1052790 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| C1P85_RS05620 (1052800) | 1052800..1053209 | - | 410 | Protein_1015 | IS3 family transposase ISSfl10 | Transposase |
| C1P85_RS24275 (1053273) | 1053273..1053389 | - | 117 | Protein_1016 | hypothetical protein | - |
| C1P85_RS05625 (1053425) | 1053425..1053706 | - | 282 | WP_001069001.1 | YdaE family protein | - |
| C1P85_RS05630 (1053723) | 1053723..1054571 | - | 849 | WP_000935590.1 | Rha family phage regulatory protein | - |
| C1P85_RS05635 (1055119) | 1055119..1056347 | + | 1229 | Protein_1019 | IS3 family transposase IS2 | Transposase |
| C1P85_RS05645 (1056589) | 1056589..1056792 | - | 204 | WP_001005968.1 | hypothetical protein | - |
| C1P85_RS05650 (1056794) | 1056794..1056949 | - | 156 | WP_001091985.1 | DUF1391 family protein | - |
| C1P85_RS05655 (1057152) | 1057152..1057559 | - | 408 | WP_128882117.1 | helix-turn-helix domain-containing protein | - |
| C1P85_RS05660 (1057636) | 1057636..1057862 | + | 227 | Protein_1023 | Cro/CI family transcriptional regulator | - |
| C1P85_RS05665 (1057846) | 1057846..1058268 | + | 423 | WP_000702036.1 | toxin YdaT family protein | - |
| C1P85_RS05670 (1058346) | 1058346..1058990 | + | 645 | WP_005061591.1 | hypothetical protein | - |
| C1P85_RS05675 (1059136) | 1059136..1059882 | + | 747 | Protein_1026 | ATP-binding protein | - |
| C1P85_RS05680 (1059897) | 1059897..1060319 | + | 423 | WP_001118167.1 | DUF977 family protein | - |
| C1P85_RS05685 (1060377) | 1060377..1060733 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| C1P85_RS05690 (1060902) | 1060902..1061567 | + | 666 | WP_012421537.1 | epoxyqueuosine reductase QueH | - |
| C1P85_RS05695 (1061795) | 1061795..1061950 | + | 156 | WP_014532198.1 | type I toxin-antitoxin system toxin HokD | - |
| C1P85_RS05700 (1062200) | 1062200..1062487 | + | 288 | WP_000687442.1 | hypothetical protein | - |
| C1P85_RS05705 (1062526) | 1062526..1062894 | + | 369 | Protein_1032 | DUF1367 family protein | - |
| C1P85_RS05715 (1064132) | 1064132..1064365 | + | 234 | Protein_1034 | DUF1367 family protein | - |
| C1P85_RS05720 (1064365) | 1064365..1064655 | + | 291 | WP_000228005.1 | DUF1364 domain-containing protein | - |
| C1P85_RS05725 (1064652) | 1064652..1064762 | + | 111 | Protein_1036 | DUF1133 family protein | - |
| C1P85_RS05730 (1064839) | 1064839..1066007 | + | 1169 | WP_000747032.1 | IS3 family transposase ISLad1 | Transposase |
| C1P85_RS05735 (1066332) | 1066332..1067099 | + | 768 | Protein_1038 | hypothetical protein | - |
| C1P85_RS05740 (1067174) | 1067174..1067452 | + | 279 | WP_005061104.1 | hypothetical protein | - |
| C1P85_RS05745 (1067449) | 1067449..1067859 | + | 411 | WP_000814621.1 | recombination protein NinB | - |
| C1P85_RS05750 (1067856) | 1067856..1068032 | + | 177 | WP_024260406.1 | NinE family protein | - |
| C1P85_RS05755 (1068074) | 1068074..1068382 | - | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| C1P85_RS05760 (1068372) | 1068372..1068602 | - | 231 | WP_005061113.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C1P85_RS05765 (1068615) | 1068615..1069073 | + | 459 | WP_000961311.1 | ash family protein | - |
| C1P85_RS05770 (1069131) | 1069131..1069583 | + | 453 | WP_232046050.1 | Rha family transcriptional regulator | - |
| C1P85_RS05775 (1069580) | 1069580..1069813 | + | 234 | WP_000618004.1 | hypothetical protein | - |
| C1P85_RS05780 (1069800) | 1069800..1070708 | + | 909 | WP_001247840.1 | hypothetical protein | - |
| C1P85_RS05785 (1070719) | 1070719..1071597 | + | 879 | WP_000988183.1 | ATP-binding protein | - |
| C1P85_RS05790 (1071594) | 1071594..1072985 | + | 1392 | WP_000211324.1 | replicative DNA helicase | - |
| C1P85_RS05795 (1072982) | 1072982..1073239 | + | 258 | WP_001064799.1 | hypothetical protein | - |
| C1P85_RS05800 (1073334) | 1073334..1073534 | + | 201 | WP_000111769.1 | protein ninH | - |
| C1P85_RS05805 (1073527) | 1073527..1073907 | + | 381 | WP_001204832.1 | antiterminator Q family protein | - |
| C1P85_RS05830 (1074710) | 1074710..1074925 | + | 216 | WP_000839566.1 | class II holin family protein | - |
| C1P85_RS05835 (1074929) | 1074929..1075558 | + | 630 | WP_005083349.1 | hypothetical protein | - |
| C1P85_RS05840 (1075624) | 1075624..1076157 | + | 534 | WP_001274722.1 | lysozyme | - |
| C1P85_RS23965 (1076154) | 1076154..1076621 | + | 468 | WP_000092287.1 | lysis protein | - |
| C1P85_RS05850 (1076824) | 1076824..1077003 | + | 180 | Protein_1057 | Rha family transcriptional regulator | - |
| C1P85_RS05860 (1078334) | 1078334..1078687 | + | 354 | WP_000439005.1 | hypothetical protein | - |
| C1P85_RS23970 (1078995) | 1078995..1079171 | - | 177 | WP_001205133.1 | hypothetical protein | - |
| C1P85_RS05875 (1079568) | 1079568..1079780 | + | 213 | WP_005107083.1 | hypothetical protein | - |
| C1P85_RS05880 (1079837) | 1079837..1079956 | + | 120 | Protein_1062 | IS3 family transposase ISSfl10 | Transposase |
| C1P85_RS05885 (1079998) | 1079998..1080123 | - | 126 | Protein_1063 | IS3 family transposase | - |
| C1P85_RS05895 (1081373) | 1081373..1082459 | - | 1087 | Protein_1065 | IS3 family transposase | - |
| C1P85_RS05900 (1082515) | 1082515..1083554 | + | 1040 | Protein_1066 | IS3 family transposase IS600 | Transposase |
| C1P85_RS05905 (1083597) | 1083597..1083905 | + | 309 | Protein_1067 | terminase small subunit | - |
| C1P85_RS05910 (1083877) | 1083877..1085805 | + | 1929 | WP_001026848.1 | phage terminase large subunit family protein | - |
| C1P85_RS05915 (1085789) | 1085789..1085992 | + | 204 | WP_000259004.1 | gpW family head-tail joining protein | - |
| C1P85_RS05920 (1085989) | 1085989..1087582 | + | 1594 | Protein_1070 | phage portal protein | - |
| C1P85_RS05925 (1087572) | 1087572..1089077 | + | 1506 | WP_075332558.1 | S49 family peptidase | - |
| C1P85_RS05930 (1089114) | 1089114..1089461 | + | 348 | WP_000256830.1 | head decoration protein | - |
| C1P85_RS05935 (1089519) | 1089519..1090547 | + | 1029 | WP_000522637.1 | major capsid protein | - |
| C1P85_RS05940 (1090599) | 1090599..1090985 | + | 387 | WP_000201488.1 | DNA-packaging protein FI | - |
| C1P85_RS05945 (1090997) | 1090997..1091374 | + | 378 | WP_000348593.1 | head-tail joining protein | - |
| C1P85_RS05950 (1091361) | 1091361..1091945 | + | 585 | WP_000677140.1 | phage tail protein | - |
| C1P85_RS05955 (1091942) | 1091942..1092343 | + | 402 | WP_001079406.1 | phage minor tail U family protein | - |
| C1P85_RS05960 (1092354) | 1092354..1093094 | + | 741 | WP_000211126.1 | phage tail tube protein | - |
| C1P85_RS05965 (1093153) | 1093153..1093539 | + | 387 | WP_000478927.1 | phage minor tail protein G | - |
| C1P85_RS05970 (1093548) | 1093548..1093877 | + | 330 | WP_001161004.1 | phage tail assembly protein T | - |
| C1P85_RS05975 (1093849) | 1093849..1096890 | + | 3042 | WP_128881990.1 | phage tail tape measure protein | - |
| C1P85_RS05980 (1096890) | 1096890..1097219 | + | 330 | WP_000447264.1 | phage tail protein | - |
| C1P85_RS05985 (1097219) | 1097219..1097917 | + | 699 | WP_001152490.1 | phage minor tail protein L | - |
| C1P85_RS05990 (1097922) | 1097922..1098665 | + | 744 | WP_000194737.1 | C40 family peptidase | - |
| C1P85_RS05995 (1098629) | 1098629..1099204 | + | 576 | WP_005105520.1 | tail assembly protein | - |
| C1P85_RS06000 (1099265) | 1099265..1102744 | + | 3480 | WP_000515521.1 | host specificity protein J | - |
| C1P85_RS06005 (1102812) | 1102812..1103411 | + | 600 | WP_001230368.1 | Outer membrane protein X | VF |
| C1P85_RS06010 (1103475) | 1103475..1104886 | + | 1412 | Protein_1088 | prophage tail fiber N-terminal domain-containing protein | - |
| C1P85_RS06015 (1104837) | 1104837..1105460 | + | 624 | WP_000930145.1 | DUF4376 domain-containing protein | - |
| C1P85_RS06025 (1105640) | 1105640..1107403 | - | 1764 | WP_000801162.1 | NEL-type E3 ubiquitin ligase domain-containing protein | - |
| C1P85_RS06030 (1107495) | 1107495..1107581 | + | 87 | Protein_1091 | transposase | - |
| C1P85_RS06035 (1107591) | 1107591..1107671 | - | 81 | Protein_1092 | hypothetical protein | - |
| C1P85_RS06040 (1107986) | 1107986..1108462 | - | 477 | WP_000767391.1 | kinase inhibitor | - |
| C1P85_RS06045 (1108521) | 1108521..1109810 | - | 1290 | WP_024260402.1 | adenosylmethionine--8-amino-7-oxononanoate transaminase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|