MGE detailed information
MGE type: Prophage MGE length: 48406 bp
Accession: NZ_CP026762 Location: 1510011..1558416 Organism: Shigella boydii strain NCTC 9850 Replicon: chromosome
Accession: NZ_CP026762 Location: 1510011..1558416 Organism: Shigella boydii strain NCTC 9850 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P50_RS08395 () | 1505868..1506668 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| C1P50_RS08400 () | 1506681..1507532 | + | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| C1P50_RS08405 () | 1507587..1508045 | + | 459 | WP_000156249.1 | DUF986 family protein | - |
| C1P50_RS08410 () | 1508473..1509039 | + | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| C1P50_RS08415 () | 1509036..1509845 | - | 810 | WP_000010115.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| C1P50_RS08420 () | 1510011..1510220 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| C1P50_RS08425 () | 1510233..1510376 | - | 144 | WP_001295496.1 | YobF family protein | - |
| C1P50_RS08430 () | 1510557..1511254 | - | 698 | Protein_1582 | IS1 family transposase IS1X2 | Transposase |
| C1P50_RS08435 () | 1511595..1511882 | - | 288 | WP_001006860.1 | YebO family protein | - |
| C1P50_RS08440 () | 1511957..1512100 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| C1P50_RS08445 () | 1512259..1512498 | + | 240 | WP_001211009.1 | membrane protein | - |
| C1P50_RS08450 () | 1512641..1513432 | - | 792 | WP_001262182.1 | DNA-binding transcriptional regulator KdgR | - |
| C1P50_RS08455 () | 1513609..1514982 | + | 1374 | WP_001127216.1 | MFS transporter | - |
| C1P50_RS08460 () | 1515028..1515909 | - | 882 | WP_000984517.1 | protease HtpX | - |
| C1P50_RS08465 () | 1516101..1518149 | - | 2049 | WP_001315679.1 | carboxy terminal-processing peptidase | - |
| C1P50_RS08470 () | 1518169..1518867 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| C1P50_RS08475 () | 1518964..1519461 | - | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| C1P50_RS08480 () | 1519591..1520874 | + | 1284 | WP_012421330.1 | membrane integrity lipid transport subunit YebS | - |
| C1P50_RS08485 () | 1520843..1523476 | + | 2634 | WP_039064976.1 | hypothetical protein | VF |
| C1P50_RS08490 () | 1523556..1524995 | + | 1440 | WP_024258615.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C1P50_RS08495 () | 1525113..1525349 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C1P50_RS08500 () | 1525454..1525645 | + | 192 | WP_000457842.1 | YebW family protein | - |
| C1P50_RS08505 () | 1525646..1526110 | - | 465 | Protein_1597 | serine/threonine-protein phosphatase | - |
| C1P50_RS08510 () | 1526177..1526453 | + | 277 | Protein_1598 | IS3 family transposase ISSd1 | Transposase |
| C1P50_RS08515 () | 1526583..1527710 | + | 1128 | WP_001063816.1 | IS110 family transposase ISSso6 | Transposase |
| C1P50_RS08520 () | 1528065..1528445 | + | 381 | WP_001333468.1 | IS66 family transposase ISEc8 | Transposase |
| C1P50_RS08525 () | 1528442..1528789 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| C1P50_RS08530 () | 1528838..1530376 | + | 1539 | WP_000099170.1 | IS66 family transposase ISEc22 | Transposase |
| C1P50_RS25500 () | 1530498..1530677 | + | 180 | WP_001039895.1 | hypothetical protein | - |
| C1P50_RS08540 () | 1530678..1532384 | - | 1707 | WP_000936820.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| C1P50_RS08550 () | 1532932..1533629 | + | 698 | Protein_1605 | IS1 family transposase IS1X2 | Transposase |
| C1P50_RS08555 () | 1533912..1534109 | + | 198 | Protein_1606 | metallophosphoesterase | - |
| C1P50_RS08565 () | 1535370..1535897 | + | 528 | Protein_1608 | hypothetical protein ; Integrase | Integrase |
| - () | 1536028..1536262 | + | 235 | - | - | Antitoxin Detail |
| - () | 1536029..1536132 | - | 104 | - | - | Toxin Detail |
| C1P50_RS08570 () | 1536290..1536631 | - | 342 | WP_000976477.1 | YebY family protein | - |
| C1P50_RS08575 () | 1536644..1537516 | - | 873 | WP_000879299.1 | copper homeostasis membrane protein CopD | - |
| C1P50_RS08580 () | 1537520..1537894 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C1P50_RS08585 () | 1538033..1538263 | + | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
| C1P50_RS08590 () | 1538365..1539021 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C1P50_RS08595 () | 1539045..1539707 | + | 663 | WP_000944259.1 | exodeoxyribonuclease X | - |
| C1P50_RS08600 () | 1539704..1541764 | - | 2061 | WP_073714849.1 | oligopeptidase B | - |
| C1P50_RS08605 () | 1541973..1542632 | - | 660 | Protein_1616 | tellurite resistance TerB family protein | - |
| C1P50_RS08610 () | 1542946..1543302 | - | 357 | WP_001295500.1 | protein YebF | - |
| C1P50_RS08615 () | 1543369..1543585 | - | 217 | Protein_1618 | YebG family protein | - |
| C1P50_RS08620 () | 1543719..1544897 | + | 1179 | WP_000173486.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| C1P50_RS08625 () | 1544953..1545594 | - | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| C1P50_RS08630 () | 1545631..1547442 | - | 1812 | WP_001069475.1 | phosphogluconate dehydratase | - |
| C1P50_RS08635 () | 1547677..1549152 | - | 1476 | WP_000301720.1 | glucose-6-phosphate dehydrogenase | - |
| C1P50_RS08640 () | 1549490..1550359 | + | 870 | WP_001056708.1 | DNA-binding transcriptional regulator HexR | - |
| C1P50_RS08645 () | 1550487..1551929 | + | 1443 | WP_000091148.1 | pyruvate kinase | - |
| C1P50_RS08655 () | 1553370..1554167 | - | 798 | WP_171765684.1 | Nif3-like dinuclear metal center hexameric protein | - |
| C1P50_RS08660 () | 1554190..1555015 | - | 826 | Protein_1627 | alpha/beta hydrolase | - |
| C1P50_RS08665 () | 1555108..1555905 | - | 798 | WP_134795385.1 | amidohydrolase | - |
| C1P50_RS08670 () | 1555927..1556271 | - | 345 | Protein_1629 | alpha-glycosidase | - |
| C1P50_RS08675 () | 1556288..1556985 | - | 698 | Protein_1630 | IS1 family transposase IS1X2 | Transposase |
| C1P50_RS08680 () | 1557019..1557903 | - | 885 | WP_197709144.1 | glycoside hydrolase family 13 protein | - |
| C1P50_RS08685 () | 1557913..1558610 | - | 698 | Protein_1632 | IS1 family transposase IS1X2 | Transposase |
| C1P50_RS08690 () | 1558666..1559280 | - | 615 | Protein_1633 | alpha amylase N-terminal ig-like domain-containing protein | - |
| C1P50_RS08695 () | 1559298..1559983 | - | 686 | Protein_1634 | sugar ABC transporter permease | - |
| C1P50_RS08700 () | 1560132..1561421 | - | 1290 | WP_001096092.1 | sugar ABC transporter permease | - |
| C1P50_RS08705 () | 1561424..1562656 | - | 1233 | WP_000777724.1 | maltose ABC transporter substrate-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|