Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1536028..1536262 | Replicon | chromosome |
| Accession | NZ_CP026762 | ||
| Organism | Shigella boydii strain NCTC 9850 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1536029..1536132 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1536028..1536262 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1P50_RS08550 | 1532932..1533629 | + | 698 | Protein_1605 | IS1 family transposase | - |
| C1P50_RS08555 | 1533912..1534109 | + | 198 | Protein_1606 | metallophosphoesterase | - |
| C1P50_RS08565 | 1535370..1535897 | + | 528 | Protein_1608 | tyrosine-type recombinase/integrase | - |
| - | 1536028..1536262 | + | 235 | - | - | Antitoxin |
| - | 1536029..1536132 | - | 104 | - | - | Toxin |
| C1P50_RS08570 | 1536290..1536631 | - | 342 | WP_000976477.1 | YebY family protein | - |
| C1P50_RS08575 | 1536644..1537516 | - | 873 | WP_000879299.1 | copper homeostasis membrane protein CopD | - |
| C1P50_RS08580 | 1537520..1537894 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C1P50_RS08585 | 1538033..1538263 | + | 231 | WP_000916761.1 | DNA polymerase III subunit theta | - |
| C1P50_RS08590 | 1538365..1539021 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C1P50_RS08595 | 1539045..1539707 | + | 663 | WP_000944259.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 | 1510011..1558416 | 48405 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T95699 NZ_CP026762:c1536132-1536029 [Shigella boydii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT95699 NZ_CP026762:1536028-1536262 [Shigella boydii]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
