MGE detailed information
MGE type: Genomic_island MGE length: 20682 bp
Accession: NZ_CP026491 Location: 3958650..3979331 Organism: Escherichia coli strain HS13-1 Replicon: chromosome
Accession: NZ_CP026491 Location: 3958650..3979331 Organism: Escherichia coli strain HS13-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3K24_RS20360 () | 3954765..3955190 | - | 426 | WP_000946068.1 | type VI secretion system baseplate subunit TssE | - |
| C3K24_RS20365 () | 3955195..3956679 | - | 1485 | WP_000111582.1 | type VI secretion system contractile sheath large subunit | - |
| C3K24_RS20370 () | 3956702..3957205 | - | 504 | WP_000041480.1 | type VI secretion system contractile sheath small subunit | - |
| C3K24_RS20375 () | 3957911..3958429 | + | 519 | WP_001142963.1 | Hcp family type VI secretion system effector | - |
| C3K24_RS20380 () | 3958650..3960632 | + | 1983 | WP_021524646.1 | hypothetical protein | VF |
| C3K24_RS20385 () | 3960739..3961785 | + | 1047 | WP_104976688.1 | DUF2169 domain-containing protein | - |
| C3K24_RS20390 () | 3961778..3963217 | + | 1440 | WP_000528853.1 | DUF4150 domain-containing protein | - |
| C3K24_RS20395 () | 3963192..3963482 | + | 291 | WP_000513317.1 | hypothetical protein | - |
| C3K24_RS20400 () | 3963740..3964504 | + | 765 | Protein_3748 | ISAs1 family transposase ISEc1 | Transposase |
| C3K24_RS20405 () | 3964733..3965236 | + | 504 | WP_021555008.1 | hypothetical protein | - |
| C3K24_RS20410 () | 3965330..3965818 | + | 489 | WP_001298174.1 | integrating conjugative element protein | - |
| C3K24_RS20415 () | 3965844..3966038 | + | 195 | Protein_3751 | ISAs1 family transposase | - |
| C3K24_RS20420 () | 3966089..3966859 | - | 771 | WP_001118042.1 | 2-oxoglutaramate amidase | - |
| C3K24_RS20425 () | 3967040..3967486 | + | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| C3K24_RS20430 () | 3967529..3969973 | - | 2445 | WP_000973137.1 | hypothetical protein | VF |
| C3K24_RS20435 () | 3970213..3970791 | + | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| C3K24_RS20440 () | 3970996..3971763 | + | 768 | WP_001331866.1 | class II glutamine amidotransferase | - |
| C3K24_RS20445 () | 3971734..3972474 | - | 741 | WP_001225679.1 | murein L,D-transpeptidase | - |
| C3K24_RS20450 () | 3972786..3973535 | + | 750 | WP_000093934.1 | hypothetical protein | VF |
| C3K24_RS20455 () | 3973711..3974208 | + | 498 | WP_000006241.1 | REP-associated tyrosine transposase RayT | - |
| C3K24_RS29260 () | 3974291..3974449 | - | 159 | WP_014639450.1 | hypothetical protein | - |
| C3K24_RS20460 () | 3974528..3976240 | - | 1713 | Protein_3761 | hypothetical protein | VF |
| C3K24_RS20465 () | 3976212..3976997 | + | 786 | WP_000207544.1 | hypothetical protein | VF |
| C3K24_RS20470 () | 3977068..3978123 | + | 1056 | WP_001226168.1 | DNA polymerase IV | - |
| C3K24_RS20475 () | 3978175..3978468 | + | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| C3K24_RS20480 () | 3978471..3978869 | + | 399 | WP_001263500.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| C3K24_RS20485 () | 3978879..3979331 | + | 453 | WP_001059895.1 | GNAT family N-acetyltransferase | - |
| C3K24_RS20490 () | 3979521..3980660 | + | 1140 | WP_000521577.1 | RNA ligase RtcB family protein | - |
| C3K24_RS20495 () | 3980657..3981271 | + | 615 | WP_000602123.1 | peptide chain release factor H | - |
| C3K24_RS20500 () | 3981328..3982785 | - | 1458 | WP_001292999.1 | cytosol nonspecific dipeptidase | - |
| C3K24_RS20505 () | 3983046..3983504 | + | 459 | WP_001291988.1 | xanthine phosphoribosyltransferase | - |
| - () | 3984100..3984180 | + | 81 | NuclAT_4 | - | - |
| - () | 3984100..3984180 | + | 81 | NuclAT_4 | - | - |
| - () | 3984100..3984180 | + | 81 | NuclAT_4 | - | - |
| - () | 3984100..3984180 | + | 81 | NuclAT_4 | - | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|