MGE detailed information
MGE type: Prophage MGE length: 62593 bp
Accession: NZ_CP026085 Location: 2286943..2349535 Organism: Escherichia coli strain DH5alpha Replicon: chromosome
Accession: NZ_CP026085 Location: 2286943..2349535 Organism: Escherichia coli strain DH5alpha Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1467_RS11870 () | 2282842..2284062 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| C1467_RS11875 () | 2284187..2284882 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| C1467_RS11880 () | 2284835..2286127 | - | 1293 | WP_071524606.1 | voltage-gated ClC-type chloride channel ClcB | - |
| C1467_RS11885 () | 2286286..2286900 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| C1467_RS11890 () | 2286943..2287797 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit | - |
| C1467_RS11895 () | 2287799..2288416 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| C1467_RS11900 () | 2288427..2290850 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| C1467_RS11905 () | 2290911..2293337 | - | 2427 | WP_000041685.1 | dimethyl sulfoxide reductase subunit A | - |
| C1467_RS11910 () | 2293536..2293841 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| C1467_RS11915 () | 2293949..2294659 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| C1467_RS11920 () | 2294662..2295222 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| C1467_RS11925 () | 2295257..2295598 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| C1467_RS11930 () | 2295733..2296059 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| C1467_RS11940 () | 2296265..2297479 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| C1467_RS11945 () | 2297491..2298510 | + | 1020 | WP_000836076.1 | Zn-dependent oxidoreductase | - |
| C1467_RS11955 () | 2298698..2299978 | - | 1281 | WP_000876956.1 | site-specific integrase | - |
| C1467_RS11960 () | 2300013..2300264 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| C1467_RS11965 () | 2300337..2302814 | - | 2478 | WP_000048348.1 | exonuclease | - |
| C1467_RS11970 () | 2302907..2303098 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| C1467_RS11975 () | 2303095..2303283 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| C1467_RS11985 () | 2303851..2304069 | - | 219 | WP_001171942.1 | hypothetical protein | - |
| C1467_RS11995 () | 2304229..2304384 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| C1467_RS12000 () | 2304551..2304958 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| C1467_RS12005 () | 2305042..2305272 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| C1467_RS12010 () | 2305256..2305777 | + | 522 | WP_000705358.1 | hypothetical protein | - |
| C1467_RS12015 () | 2305758..2306723 | + | 966 | WP_000054512.1 | hypothetical protein | - |
| C1467_RS12020 () | 2306764..2307186 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| C1467_RS12025 () | 2307183..2307539 | + | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| C1467_RS25205 () | 2308150..2308437 | + | 288 | Protein_2210 | hypothetical protein | - |
| C1467_RS12040 () | 2309206..2310519 | + | 1314 | WP_000589005.1 | ISNCY family transposase | - |
| C1467_RS12050 () | 2310956..2311288 | - | 333 | WP_001301033.1 | protein FlxA | - |
| C1467_RS12055 () | 2311491..2311796 | - | 306 | WP_001326990.1 | hypothetical protein | - |
| C1467_RS12060 () | 2311821..2312060 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| C1467_RS12065 () | 2312060..2312347 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| C1467_RS12070 () | 2312419..2312574 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| C1467_RS12075 () | 2312791..2313042 | + | 252 | WP_000980994.1 | hypothetical protein | - |
| C1467_RS12080 () | 2313109..2313387 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| C1467_RS12085 () | 2313389..2314438 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| C1467_RS12090 () | 2314452..2315204 | + | 753 | WP_001047135.1 | antitermination protein | - |
| C1467_RS25000 () | 2315482..2315571 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| C1467_RS12095 () | 2315626..2315838 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| C1467_RS12100 () | 2316139..2316354 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| C1467_RS25325 () | 2316718..2316888 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| C1467_RS12105 () | 2317108..2317323 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| C1467_RS12110 () | 2317328..2317639 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| C1467_RS12115 () | 2317636..2318169 | + | 534 | WP_001092971.1 | lysozyme | - |
| C1467_RS12120 () | 2318166..2318663 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| C1467_RS12125 () | 2319026..2319238 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| C1467_RS12130 () | 2319249..2319437 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| C1467_RS25005 () | 2319440..2319505 | + | 66 | WP_120795388.1 | hypothetical protein | - |
| C1467_RS25010 () | 2319585..2319740 | + | 156 | WP_001309517.1 | hypothetical protein | - |
| C1467_RS12140 () | 2319912..2320085 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| C1467_RS12145 () | 2320237..2320647 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| C1467_RS12150 () | 2320705..2320938 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| C1467_RS12160 () | 2321327..2321872 | + | 546 | WP_000453611.1 | DNA-packaging protein | - |
| C1467_RS12165 () | 2321847..2323772 | + | 1926 | WP_001027259.1 | phage terminase large subunit family protein | - |
| C1467_RS12170 () | 2323769..2323975 | + | 207 | WP_000198149.1 | gpW family protein | - |
| C1467_RS12175 () | 2323972..2325573 | + | 1602 | WP_001349919.1 | phage portal protein | - |
| C1467_RS12180 () | 2325554..2326873 | + | 1320 | WP_000123305.1 | S49 family peptidase | - |
| C1467_RS12185 () | 2326883..2327215 | + | 333 | WP_001295978.1 | head decoration protein | - |
| C1467_RS12190 () | 2327271..2328296 | + | 1026 | WP_000063280.1 | major capsid protein | - |
| C1467_RS12195 () | 2328338..2328736 | + | 399 | WP_000158921.1 | DNA-packaging protein FI | - |
| C1467_RS12200 () | 2328748..2329101 | + | 354 | WP_000753007.1 | head-tail joining protein | - |
| C1467_RS12205 () | 2329113..2329691 | + | 579 | WP_000985119.1 | phage tail protein | - |
| C1467_RS12210 () | 2329688..2330083 | + | 396 | WP_000683105.1 | phage minor tail U family protein | - |
| C1467_RS12215 () | 2330091..2330831 | + | 741 | WP_001349920.1 | phage tail protein | - |
| C1467_RS12220 () | 2330847..2331269 | + | 423 | WP_000479150.1 | phage minor tail protein G | - |
| C1467_RS12225 () | 2331251..2331685 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| C1467_RS12230 () | 2331678..2334239 | + | 2562 | WP_000840335.1 | phage tail tape measure protein | - |
| C1467_RS12235 () | 2334236..2334565 | + | 330 | WP_000847360.1 | phage tail protein | - |
| C1467_RS12240 () | 2334565..2335263 | + | 699 | WP_001152622.1 | phage minor tail protein L | - |
| C1467_RS12245 () | 2335269..2336012 | + | 744 | WP_001349921.1 | C40 family peptidase | - |
| C1467_RS12250 () | 2335949..2336581 | + | 633 | WP_000090891.1 | tail assembly protein | - |
| C1467_RS12255 () | 2336642..2340055 | + | 3414 | WP_000033679.1 | host specificity protein J | - |
| C1467_RS12260 () | 2340126..2340725 | + | 600 | WP_001233072.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| C1467_RS12265 () | 2340790..2343864 | + | 3075 | WP_000279140.1 | phage tail protein | - |
| C1467_RS12270 () | 2343864..2344439 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| C1467_RS12275 () | 2344537..2345127 | - | 591 | WP_000078177.1 | recombinase family protein | - |
| C1467_RS12280 () | 2345444..2345677 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| C1467_RS25015 () | 2345746..2345859 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| C1467_RS12285 () | 2346380..2347747 | + | 1368 | Protein_2262 | MHS family MFS transporter | - |
| C1467_RS12290 () | 2347836..2349296 | + | 1461 | WP_000527779.1 | mannitol dehydrogenase family protein | - |
| C1467_RS12295 () | 2349332..2349535 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| C1467_RS12300 () | 2349713..2350399 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| C1467_RS12305 () | 2350488..2351234 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| C1467_RS12315 () | 2351371..2353416 | + | 2046 | WP_001299399.1 | peptidyl-dipeptidase Dcp | - |
| C1467_RS12325 () | 2353461..2353979 | - | 519 | WP_001024810.1 | 2-oxo-tetronate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|