MGE detailed information
MGE type: Genomic_island MGE length: 12810 bp
Accession: NZ_CP025950 Location: 2438731..2451540 Organism: Escherichia coli strain SCEC020023 Replicon: chromosome
Accession: NZ_CP025950 Location: 2438731..2451540 Organism: Escherichia coli strain SCEC020023 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1A20_RS13320 () | 2438731..2438997 | + | 267 | WP_001301023.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| C1A20_RS13325 () | 2438997..2440319 | + | 1323 | WP_001125439.1 | type II toxin-antitoxin system serine/threonine protein kinase toxin HipA | Toxin Detail |
| C1A20_RS13330 () | 2440631..2440839 | + | 209 | Protein_2290 | helix-turn-helix transcriptional regulator | - |
| C1A20_RS13335 () | 2441094..2442320 | + | 1227 | Protein_2291 | Outer membrane usher protein FimD | VF |
| C1A20_RS13340 () | 2442334..2442864 | + | 531 | WP_000876763.1 | Protein FimF | VF |
| C1A20_RS13345 () | 2442877..2443380 | + | 504 | WP_000825452.1 | Protein FimG | VF |
| C1A20_RS13350 () | 2443439..2444353 | + | 915 | WP_000520662.1 | Type 1 fimbrin D-mannose specific adhesin | VF |
| C1A20_RS13355 () | 2444687..2446966 | + | 2280 | WP_000726691.1 | acid resistance putative oxidoreductase YdeP | - |
| C1A20_RS13360 () | 2447214..2447411 | + | 198 | WP_000543384.1 | two-component system connector SafA | - |
| C1A20_RS13365 () | 2447486..2448247 | + | 762 | WP_000060492.1 | acid stress response transcriptional regulator YdeO | - |
| C1A20_RS13370 () | 2448649..2450331 | + | 1683 | WP_001295684.1 | sulfatase | - |
| C1A20_RS13375 () | 2450383..2451540 | + | 1158 | WP_001301030.1 | anaerobic sulfatase maturase | - |
| C1A20_RS13380 () | 2451506..2451628 | - | 123 | WP_120795387.1 | protein YneP | - |
| C1A20_RS13385 () | 2451831..2453516 | + | 1686 | WP_000628576.1 | ABC transporter ATP-binding protein/permease | - |
| C1A20_RS13390 () | 2453554..2455926 | + | 2373 | WP_000832437.1 | TonB-dependent receptor plug domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20025 | CP009789 | 1561271..1572871 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20066 | HG738867 | 1469371..1480971 | 0.003 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1040 | NC_000913 | 1580842..1592442 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21437 | NC_007779 | 1582556..1594156 | 0.003 | |
| Escherichia coli HS | Genomic island | TA22421 | NC_009800 | 1597665..1609265 | 0.005 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22685 | NC_010473 | 1669461..1680091 | 0.006 | |
| Escherichia coli BW2952 | Genomic island | TA23853 | NC_012759 | 1470925..1482525 | 0.003 | |
| Escherichia coli DH1 | Genomic island | TA27403 | NC_017638 | 1563024..1574624 | 0.003 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29002 | NC_020518 | 1287669..1299269 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48682 | NZ_CP009273 | 1575099..1586699 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68424 | NZ_CP017979 | 1484612..1496212 | 0.003 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90478 | NZ_CP025520 | 438284..449884 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285016 | NZ_HG738867 | 1469371..1480971 | 0.003 |