MGE detailed information
MGE type: Conjugative plasmid MGE length: 73313 bp
Accession: NZ_CP025949 Location: 1..73313 Organism: Escherichia coli strain SCEC020023 Replicon: plasmid pCTXM55_020023
Accession: NZ_CP025949 Location: 1..73313 Organism: Escherichia coli strain SCEC020023 Replicon: plasmid pCTXM55_020023
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1A20_RS25425 () | 1..858 | + | 858 | WP_032495102.1 | incFII family plasmid replication initiator RepA | - |
| C1A20_RS00975 () | 1797..2450 | + | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| C1A20_RS00980 () | 2543..2800 | + | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| C1A20_RS00985 () | 2733..3134 | + | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| C1A20_RS00990 () | 3383..3798 | + | 416 | Protein_5 | IS1 family transposase IS1R | Transposase |
| C1A20_RS00995 () | 3834..4292 | - | 459 | Protein_6 | Tn3 family transposase TnpA_Tn3 | Transposase |
| C1A20_RS01000 () | 4464..5663 | - | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| C1A20_RS01005 () | 5673..5861 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| C1A20_RS01010 () | 5981..7411 | + | 1431 | Protein_9 | IS4 family transposase IS50R | Transposase |
| C1A20_RS01015 () | 7440..8234 | + | 795 | WP_000572405.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| C1A20_RS01020 () | 8255..8491 | + | 237 | Protein_11 | hypothetical protein | - |
| C1A20_RS01025 () | 8541..9245 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| C1A20_RS01030 () | 9550..10107 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| C1A20_RS01035 () | 10290..11150 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| C1A20_RS01040 () | 11320..12075 | + | 756 | WP_012372818.1 | 16S rRNA (guanine(1405)-N(7))-methyltransferase | ARG |
| C1A20_RS01045 () | 12201..12905 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| C1A20_RS01050 () | 12955..13698 | + | 744 | Protein_17 | Beta-lactamase TEM | ARG |
| C1A20_RS01055 () | 13957..14433 | + | 477 | WP_013023839.1 | WbuC family cupin fold metalloprotein | - |
| C1A20_RS01060 () | 14480..15355 | - | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| C1A20_RS01065 () | 15777..16481 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| C1A20_RS25225 () | 16547..16612 | + | 66 | Protein_21 | IS1 family transposase | - |
| C1A20_RS01085 () | 18061..18295 | + | 235 | Protein_22 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| C1A20_RS01090 () | 18423..18704 | + | 282 | WP_001333089.1 | hypothetical protein | - |
| C1A20_RS01095 () | 18827..19177 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| C1A20_RS01100 () | 19180..20142 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| C1A20_RS01105 () | 20289..20582 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| C1A20_RS01115 () | 20659..21342 | + | 684 | WP_000085883.1 | DNA methylase | - |
| C1A20_RS01120 () | 21343..21564 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| C1A20_RS01125 () | 21578..22012 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| C1A20_RS25230 () | 22063..22839 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| C1A20_RS01140 () | 23380..23682 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| C1A20_RS01145 () | 23729..24151 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| C1A20_RS01150 () | 24148..24339 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| C1A20_RS01160 () | 25377..25607 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| C1A20_RS01165 () | 25659..27020 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| C1A20_RS01170 () | 27067..27630 | + | 564 | WP_015059007.1 | class I SAM-dependent methyltransferase | - |
| C1A20_RS01195 () | 28467..28994 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| C1A20_RS01200 () | 29052..29285 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| C1A20_RS01205 () | 29346..31369 | + | 2024 | Protein_39 | ParB/RepB/Spo0J family partition protein | - |
| C1A20_RS01210 () | 31438..31872 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| C1A20_RS01215 () | 31869..32588 | + | 720 | WP_001276217.1 | plasmid SOS inhibition protein A | - |
| - () | 32600..32824 | + | 225 | NuclAT_0 | - | - |
| - () | 32600..32824 | + | 225 | NuclAT_0 | - | - |
| - () | 32600..32824 | + | 225 | NuclAT_0 | - | - |
| - () | 32600..32824 | + | 225 | NuclAT_0 | - | - |
| C1A20_RS25235 () | 32609..32788 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| C1A20_RS01220 () | 32868..33026 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| C1A20_RS25430 () | 33264..33641 | - | 378 | Protein_44 | hypothetical protein | - |
| C1A20_RS01240 () | 33941..34237 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| C1A20_RS01245 () | 34348..35169 | + | 822 | WP_001234445.1 | DUF945 domain-containing protein | - |
| C1A20_RS01250 () | 35466..36113 | - | 648 | WP_015059008.1 | hypothetical protein | VF |
| C1A20_RS01255 () | 36390..36773 | + | 384 | WP_000124981.1 | relaxosome protein TraM | - |
| C1A20_RS01260 () | 36964..37650 | + | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| C1A20_RS01265 () | 37744..37971 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| C1A20_RS01270 () | 38005..38370 | + | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| C1A20_RS01275 () | 38385..38696 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| C1A20_RS01280 () | 38718..39284 | + | 567 | WP_000399794.1 | type IV conjugative transfer system protein TraE | - |
| C1A20_RS01285 () | 39295..39999 | + | 705 | WP_072095570.1 | type-F conjugative transfer system secretin TraK | - |
| C1A20_RS01290 () | 39999..41426 | + | 1428 | WP_032297072.1 | conjugal transfer protein TraB | - |
| C1A20_RS01295 () | 41416..42006 | + | 591 | WP_000002778.1 | conjugal transfer protein TraP | - |
| C1A20_RS01300 () | 41960..42190 | + | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| C1A20_RS01305 () | 42202..42453 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| C1A20_RS01310 () | 42450..42965 | + | 516 | WP_000809902.1 | type IV conjugative transfer system lipoprotein TraV | - |
| C1A20_RS01315 () | 43100..43321 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| C1A20_RS01320 () | 43481..46108 | + | 2628 | WP_015059012.1 | type IV secretion system protein TraC | - |
| C1A20_RS01325 () | 46105..46491 | + | 387 | WP_015059013.1 | type-F conjugative transfer system protein TrbI | - |
| C1A20_RS01330 () | 46488..47120 | + | 633 | WP_001203735.1 | type-F conjugative transfer system protein TraW | - |
| C1A20_RS01335 () | 47117..48109 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| C1A20_RS01340 () | 48136..48444 | + | 309 | WP_000412447.1 | hypothetical protein | - |
| C1A20_RS01345 () | 48507..49028 | + | 522 | WP_015059014.1 | hypothetical protein | - |
| C1A20_RS01350 () | 49055..49693 | + | 639 | WP_000087532.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| C1A20_RS01355 () | 49690..50061 | + | 372 | WP_000056336.1 | hypothetical protein | - |
| C1A20_RS01360 () | 50087..50509 | + | 423 | WP_001229309.1 | HNH endonuclease | - |
| C1A20_RS01365 () | 50506..52356 | + | 1851 | WP_015059015.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| C1A20_RS01370 () | 52383..52640 | + | 258 | WP_053913405.1 | conjugal transfer protein TrbE | - |
| C1A20_RS01375 () | 52633..53376 | + | 744 | WP_015059017.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| C1A20_RS01380 () | 53492..53773 | + | 282 | WP_000549793.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| C1A20_RS01385 () | 53760..54305 | + | 546 | WP_000059817.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| C1A20_RS01390 () | 54235..54609 | + | 375 | WP_071776752.1 | P-type conjugative transfer protein TrbJ | - |
| C1A20_RS01395 () | 54563..54955 | + | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| C1A20_RS01400 () | 54942..56315 | + | 1374 | WP_000944325.1 | conjugal transfer protein TraH | - |
| C1A20_RS01405 () | 56312..59128 | + | 2817 | WP_015059018.1 | conjugal transfer mating pair stabilization protein TraG | - |
| C1A20_RS01410 () | 59161..59682 | + | 522 | WP_000632668.1 | conjugal transfer entry exclusion protein TraS | - |
| C1A20_RS01415 () | 59707..60438 | + | 732 | WP_021559024.1 | complement resistance protein TraT | - |
| C1A20_RS01420 () | 60641..61378 | + | 738 | WP_148251816.1 | hypothetical protein | - |
| C1A20_RS01425 () | 61429..63654 | + | 2226 | WP_000009363.1 | type IV conjugative transfer system coupling protein TraD | - |
| C1A20_RS01430 () | 63654..68924 | + | 5271 | WP_061093447.1 | Multifunctional conjugation protein TraI | Relaxase |
| C1A20_RS01435 () | 68944..69690 | + | 747 | WP_000205770.1 | conjugal transfer pilus acetylase TraX | - |
| C1A20_RS01440 () | 69745..70305 | + | 561 | WP_000139328.1 | fertility inhibition protein FinO | - |
| C1A20_RS01445 () | 70437..70637 | + | 201 | WP_015059022.1 | hypothetical protein | - |
| C1A20_RS01450 () | 71023..71622 | + | 600 | WP_032083981.1 | hypothetical protein | - |
| C1A20_RS01455 () | 71786..72016 | + | 231 | WP_001736714.1 | hypothetical protein | - |
| - () | 72217..72276 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 72217..72276 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 72217..72276 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| - () | 72217..72276 | - | 60 | NuclAT_1 | - | Antitoxin Detail |
| C1A20_RS01465 () | 72321..72470 | + | 150 | WP_001312851.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| C1A20_RS01470 () | 72754..73002 | + | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|