MGE detailed information
MGE type: Prophage MGE length: 72493 bp
Accession: NZ_CP025916 Location: 4699507..4771999 Organism: Escherichia coli strain 120899 Replicon: chromosome
Accession: NZ_CP025916 Location: 4699507..4771999 Organism: Escherichia coli strain 120899 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXW56_RS23290 () | 4695405..4696625 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| CXW56_RS23295 () | 4696750..4697445 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| CXW56_RS23300 () | 4697398..4698690 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| CXW56_RS23305 () | 4698850..4699464 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| CXW56_RS23310 () | 4699507..4700361 | - | 855 | WP_000526492.1 | dimethyl sulfoxide reductase anchor subunit | - |
| CXW56_RS23315 () | 4700363..4700980 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| CXW56_RS23320 () | 4700991..4703414 | - | 2424 | WP_001340362.1 | dimethyl sulfoxide reductase subunit A | - |
| CXW56_RS23325 () | 4703475..4705901 | - | 2427 | WP_000041685.1 | dimethyl sulfoxide reductase subunit A | - |
| CXW56_RS23330 () | 4706100..4706405 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| CXW56_RS23335 () | 4706513..4707223 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| CXW56_RS23340 () | 4707226..4707786 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| CXW56_RS23345 () | 4707821..4708162 | - | 342 | WP_000705214.1 | DUF1283 family protein | - |
| CXW56_RS23350 () | 4708297..4708623 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| CXW56_RS23355 () | 4708829..4710043 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| CXW56_RS23360 () | 4710055..4711074 | + | 1020 | WP_000836079.1 | Zn-dependent oxidoreductase | - |
| CXW56_RS23365 () | 4711132..4711239 | + | 108 | WP_072131185.1 | transporter | - |
| CXW56_RS23370 () | 4711262..4712557 | - | 1296 | WP_001355842.1 | Putative defective protein IntQ ; Integrase | Integrase |
| CXW56_RS23375 () | 4712577..4712828 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| CXW56_RS23380 () | 4712898..4715378 | - | 2481 | WP_000048591.1 | exonuclease | - |
| CXW56_RS23385 () | 4715458..4715661 | - | 204 | WP_001090551.1 | DUF1482 family protein | - |
| CXW56_RS23390 () | 4715658..4715846 | - | 189 | WP_000449194.1 | cell division inhibition protein DicB | - |
| CXW56_RS23400 () | 4716415..4716633 | - | 219 | WP_001171952.1 | hypothetical protein | - |
| CXW56_RS23405 () | 4716793..4716948 | - | 156 | WP_071608135.1 | DUF1391 family protein | - |
| CXW56_RS23410 () | 4717221..4717937 | - | 717 | WP_000103684.1 | helix-turn-helix domain-containing protein | - |
| CXW56_RS23415 () | 4717987..4718202 | + | 216 | WP_000471549.1 | transcriptional regulator | - |
| CXW56_RS23420 () | 4718199..4718624 | + | 426 | WP_000693850.1 | Rha family transcriptional regulator | - |
| CXW56_RS23425 () | 4718696..4719766 | + | 1071 | WP_001262391.1 | DNA-binding protein | - |
| CXW56_RS23430 () | 4719807..4720229 | + | 423 | WP_001151151.1 | DUF977 family protein | - |
| CXW56_RS23440 () | 4721735..4722517 | - | 783 | WP_126130100.1 | IS21 family transposase IS100kyp | Transposase |
| CXW56_RS23445 () | 4722514..4723536 | - | 1023 | WP_001356151.1 | IS21 family transposase IS100kyp | Transposase |
| CXW56_RS23455 () | 4723790..4725787 | + | 1998 | WP_005032116.1 | choline BCCT transporter BetT | - |
| CXW56_RS23465 () | 4725851..4727128 | + | 1278 | WP_000625667.1 | DUF2254 domain-containing protein | - |
| CXW56_RS23470 () | 4727411..4728106 | - | 696 | WP_032190252.1 | hypothetical protein | - |
| CXW56_RS23475 () | 4728109..4728615 | - | 507 | WP_000130123.1 | hypothetical protein | - |
| CXW56_RS23480 () | 4728612..4729442 | - | 831 | WP_001399639.1 | Sporulation initiation inhibitor protein Soj | VF |
| - () | 4730386..4730444 | - | 59 | - | - | Antitoxin Detail |
| CXW56_RS23495 () | 4730456..4730611 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| CXW56_RS23500 () | 4730778..4731056 | + | 279 | WP_001410105.1 | hypothetical protein | - |
| CXW56_RS23505 () | 4731058..4732104 | + | 1047 | WP_001265103.1 | DUF968 domain-containing protein | - |
| CXW56_RS23510 () | 4732117..4732488 | + | 372 | WP_001217451.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CXW56_RS23515 () | 4732478..4732831 | + | 354 | WP_000532207.1 | antitermination protein Q | - |
| CXW56_RS23520 () | 4733038..4734321 | - | 1284 | WP_000123148.1 | hypothetical protein | - |
| CXW56_RS23525 () | 4734578..4734772 | + | 195 | WP_001355891.1 | hypothetical protein | - |
| CXW56_RS23530 () | 4734922..4735968 | + | 1047 | WP_000799652.1 | site-specific DNA-methyltransferase | - |
| CXW56_RS23550 () | 4737038..4737430 | + | 393 | WP_001398932.1 | phage holin | - |
| CXW56_RS23555 () | 4737420..4737698 | + | 279 | WP_001398933.1 | phage holin family protein | - |
| CXW56_RS23560 () | 4737700..4738245 | + | 546 | WP_000836754.1 | glycoside hydrolase family 108 protein | - |
| CXW56_RS23565 () | 4738465..4738578 | + | 114 | WP_001305859.1 | hypothetical protein | - |
| CXW56_RS27545 () | 4738607..4738762 | + | 156 | WP_001138277.1 | hypothetical protein | - |
| CXW56_RS23570 () | 4738934..4739227 | - | 294 | WP_000738421.1 | increased serum survival lipoprotein Iss | - |
| CXW56_RS23575 () | 4739588..4739782 | - | 195 | WP_001415975.1 | YlcI/YnfO family protein | - |
| CXW56_RS23580 () | 4740171..4740716 | + | 546 | WP_000453576.1 | DNA-packaging protein | - |
| CXW56_RS23585 () | 4740691..4742106 | + | 1416 | WP_095908821.1 | phage terminase large subunit family protein | - |
| CXW56_RS23590 () | 4742027..4743598 | - | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| CXW56_RS23595 () | 4743618..4743965 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| CXW56_RS23600 () | 4743965..4744642 | - | 678 | WP_001711999.1 | IS66 family transposase ISCro1 | Transposase |
| CXW56_RS23605 () | 4744709..4745323 | + | 615 | WP_071597534.1 | phage terminase large subunit family protein | - |
| CXW56_RS23610 () | 4745320..4745526 | + | 207 | WP_000198149.1 | gpW family protein | - |
| CXW56_RS23615 () | 4745523..4747124 | + | 1602 | WP_001355924.1 | phage portal protein | - |
| CXW56_RS23620 () | 4747105..4748424 | + | 1320 | WP_000123336.1 | S49 family peptidase | - |
| CXW56_RS23625 () | 4748434..4748766 | + | 333 | WP_001299443.1 | head decoration protein | - |
| CXW56_RS23630 () | 4748822..4749847 | + | 1026 | WP_000063254.1 | major capsid protein | - |
| CXW56_RS23635 () | 4749889..4750275 | + | 387 | WP_000158859.1 | DNA-packaging protein FI | - |
| CXW56_RS23640 () | 4750287..4750640 | + | 354 | WP_000752994.1 | head-tail joining protein | - |
| CXW56_RS23645 () | 4750652..4751230 | + | 579 | WP_000985130.1 | phage tail protein | - |
| CXW56_RS23650 () | 4751227..4751622 | + | 396 | WP_000683119.1 | phage minor tail U family protein | - |
| CXW56_RS23655 () | 4751630..4752370 | + | 741 | WP_001711723.1 | phage tail protein | - |
| CXW56_RS23660 () | 4752386..4752808 | + | 423 | WP_000479153.1 | phage minor tail protein G | - |
| CXW56_RS23665 () | 4752790..4753224 | + | 435 | WP_000459458.1 | phage tail assembly protein T | - |
| CXW56_RS23670 () | 4753217..4755796 | + | 2580 | WP_000840312.1 | phage tail tape measure protein | - |
| CXW56_RS23675 () | 4755793..4756122 | + | 330 | WP_000847379.1 | phage tail protein | - |
| CXW56_RS23680 () | 4756122..4756820 | + | 699 | WP_001152639.1 | phage minor tail protein L | - |
| CXW56_RS23685 () | 4756826..4757569 | + | 744 | WP_001725868.1 | C40 family peptidase | - |
| CXW56_RS23690 () | 4757506..4758108 | + | 603 | WP_000090844.1 | tail assembly protein | - |
| CXW56_RS23695 () | 4758169..4761564 | + | 3396 | WP_095908820.1 | host specificity protein J | - |
| CXW56_RS23700 () | 4761632..4762231 | + | 600 | WP_001233545.1 | Outer membrane protein X | VF |
| CXW56_RS23705 () | 4762296..4764050 | + | 1755 | Protein_4518 | prophage tail fiber N-terminal domain-containing protein | - |
| CXW56_RS23710 () | 4764261..4764827 | + | 567 | WP_001165996.1 | DUF4376 domain-containing protein | - |
| CXW56_RS23715 () | 4764910..4764987 | - | 78 | Protein_4520 | DinI family protein | - |
| CXW56_RS23720 () | 4765047..4766330 | + | 1284 | Protein_4521 | MHS family MFS transporter YdfJ | - |
| CXW56_RS23725 () | 4766419..4767879 | + | 1461 | WP_126130101.1 | mannitol dehydrogenase family protein | - |
| CXW56_RS23730 () | 4767915..4768118 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| CXW56_RS23735 () | 4768296..4768982 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator YdfH | - |
| CXW56_RS23740 () | 4769071..4769817 | - | 747 | WP_000636571.1 | NADP-dependent 3-hydroxy acid dehydrogenase YdfG | VF |
| CXW56_RS23745 () | 4769954..4771999 | + | 2046 | WP_001315525.1 | peptidyl-dipeptidase Dcp | - |
| CXW56_RS23750 () | 4772044..4772562 | - | 519 | WP_001024809.1 | 2-oxo-tetronate isomerase | - |
| CXW56_RS23755 () | 4772838..4773230 | + | 393 | WP_000671742.1 | YdeI family stress tolerance OB fold protein | - |
| CXW56_RS23760 () | 4773485..4774375 | + | 891 | WP_000592814.1 | diguanylate cyclase DgcZ | - |
| CXW56_RS23765 () | 4774594..4774689 | - | 96 | WP_000901367.1 | protein MgtS | - |
| CXW56_RS23770 () | 4774816..4776003 | - | 1188 | WP_001054217.1 | efflux MFS transporter YdeE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|