MGE detailed information
MGE type: Prophage MGE length: 87493 bp
Accession: NZ_CP025856 Location: 56835..144327 Organism: Escherichia coli strain 504838 Replicon: chromosome
Accession: NZ_CP025856 Location: 56835..144327 Organism: Escherichia coli strain 504838 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXV93_RS00300 () | 53883..54854 | - | 972 | WP_000564745.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| CXV93_RS00305 () | 54851..55594 | - | 744 | WP_000019588.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| CXV93_RS00310 () | 55635..56030 | - | 396 | WP_000252980.1 | MAPEG family protein | - |
| CXV93_RS00315 () | 56083..56853 | - | 771 | WP_050489330.1 | DUF72 domain-containing protein | - |
| CXV93_RS00320 () | 56835..58148 | - | 1314 | WP_001696025.1 | hypothetical protein ; Integrase | Integrase |
| CXV93_RS00325 () | 58204..58440 | - | 237 | WP_000528717.1 | excisionase family protein | - |
| CXV93_RS00330 () | 58449..58595 | - | 147 | WP_001030144.1 | hypothetical protein | - |
| CXV93_RS00335 () | 58599..58841 | - | 243 | WP_001695576.1 | DUF4222 domain-containing protein | - |
| CXV93_RS00340 () | 58873..59244 | - | 372 | WP_001695578.1 | DUF5406 family protein | - |
| CXV93_RS00345 () | 59285..60112 | - | 828 | WP_000720008.1 | hypothetical protein | - |
| CXV93_RS00355 () | 60475..61056 | - | 582 | WP_001695583.1 | hypothetical protein | - |
| CXV93_RS00360 () | 61053..61241 | - | 189 | WP_001695585.1 | hypothetical protein | - |
| CXV93_RS00365 () | 61438..61644 | - | 207 | WP_000141090.1 | hypothetical protein | - |
| CXV93_RS00375 () | 61932..62480 | - | 549 | WP_032327430.1 | helix-turn-helix transcriptional regulator | - |
| CXV93_RS00380 () | 62626..63315 | - | 690 | WP_000800136.1 | LexA family transcriptional regulator | - |
| CXV93_RS00385 () | 63449..63721 | + | 273 | WP_001695592.1 | helix-turn-helix domain-containing protein | - |
| CXV93_RS00390 () | 63792..64085 | - | 294 | WP_000867914.1 | hypothetical protein | - |
| CXV93_RS00395 () | 64205..64912 | + | 708 | WP_001695593.1 | Rha family transcriptional regulator | - |
| CXV93_RS00400 () | 65025..65687 | + | 663 | WP_001695594.1 | ash family protein | - |
| CXV93_RS00405 () | 65684..65878 | + | 195 | WP_032327431.1 | hypothetical protein | - |
| CXV93_RS00410 () | 65875..66099 | + | 225 | WP_001695595.1 | hypothetical protein | - |
| CXV93_RS00415 () | 66096..67022 | + | 927 | WP_126125444.1 | helix-turn-helix domain-containing protein | - |
| CXV93_RS00420 () | 67033..67910 | + | 878 | Protein_78 | IS21 family transposase ISGur15 | Transposase |
| CXV93_RS00425 () | 67907..69298 | + | 1392 | WP_001695598.1 | replicative DNA helicase | - |
| CXV93_RS00430 () | 69295..69552 | + | 258 | WP_001695599.1 | hypothetical protein | - |
| CXV93_RS00435 () | 69552..69935 | + | 384 | WP_001695600.1 | phage antitermination Q family protein | - |
| CXV93_RS00440 () | 70125..71222 | - | 1098 | WP_001695601.1 | porin OmpC | - |
| CXV93_RS00445 () | 71675..71872 | + | 198 | WP_000917767.1 | hypothetical protein | - |
| CXV93_RS00450 () | 72023..73069 | + | 1047 | WP_032327577.1 | site-specific DNA-methyltransferase | - |
| CXV93_RS00475 () | 73704..73943 | + | 240 | WP_001695986.1 | hypothetical protein | - |
| CXV93_RS00480 () | 74187..74612 | + | 426 | WP_000466931.1 | tellurite/colicin resistance protein | - |
| CXV93_RS00485 () | 74609..74761 | + | 153 | WP_000833648.1 | DUF3927 family protein | - |
| CXV93_RS00490 () | 74853..75245 | + | 393 | WP_001695991.1 | hypothetical protein | - |
| CXV93_RS00495 () | 75235..75510 | + | 276 | WP_000950570.1 | phage holin family protein | - |
| CXV93_RS00500 () | 75516..75893 | + | 378 | WP_001117823.1 | M15 family metallopeptidase | - |
| CXV93_RS00505 () | 75908..76090 | + | 183 | WP_126125445.1 | hypothetical protein | - |
| CXV93_RS00510 () | 76123..76311 | + | 189 | WP_001695993.1 | hypothetical protein | - |
| CXV93_RS00520 () | 76758..77252 | + | 495 | WP_000373425.1 | DUF1441 family protein | - |
| CXV93_RS00525 () | 77252..79354 | + | 2103 | WP_000934105.1 | phage terminase large subunit family protein | - |
| CXV93_RS00530 () | 79351..79563 | + | 213 | WP_001072975.1 | hypothetical protein | - |
| CXV93_RS00535 () | 79491..81071 | + | 1581 | WP_126125447.1 | phage portal protein | - |
| CXV93_RS00540 () | 81016..83043 | + | 2028 | WP_099481767.1 | hypothetical protein | VF |
| CXV93_RS00545 () | 83130..83453 | + | 324 | WP_001097050.1 | DUF2190 family protein | - |
| CXV93_RS00550 () | 83446..83721 | + | 276 | WP_001283153.1 | DNA breaking-rejoining protein | - |
| CXV93_RS00555 () | 83733..84311 | + | 579 | WP_000677108.1 | phage tail protein | - |
| CXV93_RS00560 () | 84308..84709 | + | 402 | WP_001079398.1 | phage minor tail U family protein | - |
| CXV93_RS00565 () | 84720..85463 | + | 744 | WP_024241850.1 | phage tail protein | - |
| CXV93_RS00570 () | 85524..85910 | + | 387 | WP_001297778.1 | phage minor tail protein G | - |
| CXV93_RS00575 () | 85919..86248 | + | 330 | WP_001161009.1 | phage tail assembly protein T | - |
| CXV93_RS00580 () | 86220..89285 | + | 3066 | WP_001613112.1 | phage tail tape measure protein | - |
| CXV93_RS00585 () | 89285..89614 | + | 330 | WP_000447248.1 | phage tail protein | - |
| CXV93_RS00590 () | 89624..90322 | + | 699 | WP_001724602.1 | phage minor tail protein L | - |
| CXV93_RS00595 () | 90328..91071 | + | 744 | WP_024170790.1 | C40 family peptidase | - |
| CXV93_RS00600 () | 91008..91610 | + | 603 | WP_000090847.1 | tail assembly protein | - |
| CXV93_RS00605 () | 91671..95066 | + | 3396 | WP_126125448.1 | host specificity protein J | - |
| CXV93_RS00610 () | 95134..95733 | + | 600 | WP_099481765.1 | hypothetical protein | VF |
| CXV93_RS00615 () | 95798..99148 | + | 3351 | WP_126125449.1 | prophage tail fiber N-terminal domain-containing protein | - |
| CXV93_RS00620 () | 99148..99732 | + | 585 | WP_024181752.1 | tail fiber assembly protein | - |
| CXV93_RS00625 () | 100155..100721 | - | 567 | WP_000891611.1 | hydrolase | - |
| CXV93_RS00630 () | 101031..102803 | + | 1773 | WP_001258662.1 | aspartate--tRNA ligase | - |
| CXV93_RS00635 () | 102921..103373 | + | 453 | WP_001300367.1 | dihydroneopterin triphosphate diphosphatase | - |
| CXV93_RS00640 () | 103402..104142 | + | 741 | WP_000907234.1 | hypothetical protein | VF |
| CXV93_RS00645 () | 104177..104698 | + | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| CXV93_RS00650 () | 104700..105302 | - | 603 | WP_001024906.1 | YebB family permuted papain-like enzyme | - |
| CXV93_RS00655 () | 105373..105438 | + | 66 | WP_072094247.1 | stress response small protein YobI | - |
| CXV93_RS00660 () | 105577..106188 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| CXV93_RS00665 () | 106197..107207 | + | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| CXV93_RS00670 () | 107354..108139 | - | 786 | WP_000571465.1 | hypothetical protein | VF |
| CXV93_RS00675 () | 108136..108891 | - | 756 | WP_000202996.1 | hypothetical protein | VF |
| CXV93_RS00680 () | 108970..109902 | + | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| CXV93_RS00685 () | 109918..111240 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| CXV93_RS00690 () | 111360..112331 | + | 972 | WP_000448381.1 | hypothetical protein | VF |
| CXV93_RS00695 () | 112462..113904 | - | 1443 | WP_000091176.1 | pyruvate kinase | - |
| CXV93_RS00700 () | 114032..114901 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| CXV93_RS00705 () | 115239..116714 | + | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| CXV93_RS00710 () | 116949..118760 | + | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| CXV93_RS00715 () | 118797..119438 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| CXV93_RS00720 () | 119494..120672 | - | 1179 | WP_000173474.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| CXV93_RS00725 () | 120806..121096 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| CXV93_RS00730 () | 121163..121519 | + | 357 | WP_001295500.1 | protein YebF | - |
| CXV93_RS00735 () | 121846..122505 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| CXV93_RS00740 () | 122714..124774 | + | 2061 | WP_000936915.1 | oligopeptidase B | - |
| CXV93_RS00745 () | 124771..125433 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CXV93_RS00750 () | 125457..126113 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CXV93_RS00755 () | 126215..126445 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CXV93_RS00760 () | 126584..126958 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CXV93_RS00765 () | 126962..127834 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CXV93_RS00770 () | 127847..128188 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - () | 128216..128487 | - | 272 | - | - | Antitoxin Detail |
| - () | 128346..128449 | + | 104 | - | - | Toxin Detail |
| CXV93_RS00775 () | 128584..129240 | + | 657 | WP_000812723.1 | protein-serine/threonine phosphatase | - |
| CXV93_RS00780 () | 129241..129432 | - | 192 | WP_001338167.1 | YebW family protein | - |
| CXV93_RS00785 () | 129537..129773 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CXV93_RS00790 () | 129891..131330 | - | 1440 | WP_001352399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CXV93_RS00795 () | 131410..134043 | - | 2634 | WP_001297532.1 | hypothetical protein | VF |
| CXV93_RS00800 () | 134012..135295 | - | 1284 | WP_001301337.1 | membrane integrity lipid transport subunit YebS | - |
| CXV93_RS00805 () | 135425..135922 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| CXV93_RS00810 () | 136019..136717 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| CXV93_RS00815 () | 136737..138785 | + | 2049 | WP_001696313.1 | carboxy terminal-processing peptidase | - |
| CXV93_RS00820 () | 138977..139858 | + | 882 | WP_000984517.1 | protease HtpX | - |
| CXV93_RS00825 () | 139904..141277 | - | 1374 | WP_001127216.1 | MFS transporter | - |
| CXV93_RS00830 () | 141454..142245 | + | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| CXV93_RS00835 () | 142388..142627 | - | 240 | WP_001211011.1 | hypothetical protein | - |
| CXV93_RS00840 () | 142786..142929 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| CXV93_RS00845 () | 143004..143291 | + | 288 | WP_001696311.1 | YebO family protein | - |
| CXV93_RS00850 () | 143962..144105 | + | 144 | WP_001295496.1 | YobF family protein | - |
| CXV93_RS00855 () | 144118..144327 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| CXV93_RS00860 () | 144493..145302 | + | 810 | WP_000010107.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| CXV93_RS00865 () | 145299..145865 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| CXV93_RS00870 () | 146294..146752 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| CXV93_RS00875 () | 146807..147658 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| CXV93_RS00880 () | 147671..148471 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|