Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 128216..128487 | Replicon | chromosome |
| Accession | NZ_CP025856 | ||
| Organism | Escherichia coli strain 504838 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 128346..128449 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 128216..128487 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXV93_RS00745 | 124771..125433 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CXV93_RS00750 | 125457..126113 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CXV93_RS00755 | 126215..126445 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CXV93_RS00760 | 126584..126958 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CXV93_RS00765 | 126962..127834 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CXV93_RS00770 | 127847..128188 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 128216..128487 | - | 272 | - | - | Antitoxin |
| - | 128346..128449 | + | 104 | - | - | Toxin |
| CXV93_RS00775 | 128584..129240 | + | 657 | WP_000812723.1 | protein-serine/threonine phosphatase | - |
| CXV93_RS00780 | 129241..129432 | - | 192 | WP_001338167.1 | YebW family protein | - |
| CXV93_RS00785 | 129537..129773 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CXV93_RS00790 | 129891..131330 | - | 1440 | WP_001352399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 56835..144327 | 87492 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T92140 NZ_CP025856:128346-128449 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT92140 NZ_CP025856:c128487-128216 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
