MGE detailed information
MGE type: Prophage MGE length: 51815 bp
Accession: NZ_CP025707 Location: 4916497..4968311 Organism: Escherichia coli strain YDC107 Replicon: chromosome
Accession: NZ_CP025707 Location: 4916497..4968311 Organism: Escherichia coli strain YDC107 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YDC107_RS23975 () | 4911778..4912806 | + | 1029 | WP_001523164.1 | HlyD family secretion protein | - |
| YDC107_RS23980 () | 4912806..4914317 | + | 1512 | WP_001523165.1 | DHA2 family efflux MFS transporter permease subunit | - |
| YDC107_RS23985 () | 4914512..4915075 | + | 564 | WP_001046832.1 | DNA endonuclease SmrA | - |
| YDC107_RS23990 () | 4915096..4916043 | - | 948 | WP_100190652.1 | sensor domain-containing diguanylate cyclase | - |
| YDC107_RS23995 () | 4916093..4916790 | + | 698 | Protein_4672 | IS1 family transposase | - |
| YDC107_RS24000 () | 4916806..4917105 | - | 300 | Protein_4673 | sensor domain-containing diguanylate cyclase | - |
| YDC107_RS24005 () | 4917360..4918343 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| YDC107_RS24010 () | 4918821..4920194 | + | 1374 | WP_000123748.1 | ATP-dependent RNA helicase DbpA | - |
| YDC107_RS24015 () | 4920323..4921258 | - | 936 | WP_001523172.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| YDC107_RS24020 () | 4921310..4922545 | - | 1236 | WP_000040839.1 | Putative defective protein IntQ ; Integrase | Integrase |
| YDC107_RS24025 () | 4922547..4922762 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| YDC107_RS24030 () | 4922862..4923050 | - | 189 | WP_001302840.1 | DUF1187 family protein | - |
| - () | 4922866..4923044 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4922866..4923044 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4922866..4923044 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4922866..4923044 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| YDC107_RS24035 () | 4923088..4923237 | - | 150 | WP_001443846.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| YDC107_RS24040 () | 4923293..4924102 | - | 810 | WP_000166313.1 | recombination protein RecT | - |
| YDC107_RS24045 () | 4924095..4926695 | - | 2601 | WP_000105140.1 | exodeoxyribonuclease VIII | - |
| YDC107_RS24050 () | 4926797..4927072 | - | 276 | WP_001344816.1 | hypothetical protein | - |
| YDC107_RS24055 () | 4927147..4927317 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| YDC107_RS24060 () | 4927317..4927538 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| YDC107_RS24065 () | 4927980..4928468 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| YDC107_RS24070 () | 4928465..4928620 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| YDC107_RS24075 () | 4928631..4928765 | - | 135 | WP_000233809.1 | phage protein | - |
| YDC107_RS24080 () | 4928798..4929016 | - | 219 | WP_015695616.1 | hypothetical protein | - |
| YDC107_RS24085 () | 4929053..4929472 | - | 420 | WP_000233319.1 | helix-turn-helix domain-containing protein | - |
| YDC107_RS24090 () | 4929552..4929806 | + | 255 | WP_001072342.1 | hypothetical protein | - |
| YDC107_RS24095 () | 4929803..4930225 | + | 423 | WP_000693803.1 | hypothetical protein | - |
| YDC107_RS24100 () | 4930303..4931091 | + | 789 | WP_001396581.1 | hypothetical protein | - |
| YDC107_RS24105 () | 4931098..4931844 | + | 747 | WP_020233967.1 | ATP-binding protein | - |
| YDC107_RS24110 () | 4931867..4932628 | + | 762 | WP_000450716.1 | DUF1627 domain-containing protein | - |
| YDC107_RS24115 () | 4932644..4933066 | + | 423 | WP_029702111.1 | DUF977 family protein | - |
| YDC107_RS24120 () | 4933228..4933731 | + | 504 | WP_000137958.1 | hypothetical protein | - |
| YDC107_RS24125 () | 4933725..4933811 | + | 87 | Protein_4698 | DUF551 domain-containing protein | - |
| YDC107_RS24130 () | 4933852..4934625 | - | 774 | WP_000200358.1 | KilA-N domain-containing protein | - |
| YDC107_RS24135 () | 4935148..4935273 | + | 126 | WP_001445775.1 | type I toxin-antitoxin system Hok family toxin | - |
| YDC107_RS24140 () | 4935356..4935697 | - | 342 | WP_001445776.1 | DUF1971 domain-containing protein | - |
| YDC107_RS24145 () | 4936565..4937164 | + | 600 | WP_000940344.1 | DUF1367 family protein | - |
| YDC107_RS24150 () | 4937164..4937454 | + | 291 | WP_000228032.1 | DUF1364 domain-containing protein | - |
| YDC107_RS24155 () | 4937451..4937993 | + | 543 | WP_000640106.1 | DUF1133 family protein | - |
| YDC107_RS24160 () | 4938215..4938784 | + | 570 | WP_105955869.1 | hypothetical protein | - |
| YDC107_RS24165 () | 4938753..4939055 | - | 303 | WP_001328752.1 | hypothetical protein | - |
| YDC107_RS24170 () | 4939132..4939473 | + | 342 | WP_000781775.1 | phage holin, lambda family | - |
| YDC107_RS24175 () | 4939477..4939953 | + | 477 | WP_023153991.1 | glycoside hydrolase family protein | - |
| YDC107_RS24180 () | 4940170..4940355 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| YDC107_RS24185 () | 4940552..4942009 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| YDC107_RS24190 () | 4942147..4942938 | + | 792 | WP_001291105.1 | ParB/Srx family N-terminal domain-containing protein | - |
| YDC107_RS24195 () | 4942931..4943863 | + | 933 | WP_020233805.1 | hypothetical protein | - |
| YDC107_RS24200 () | 4943841..4944050 | + | 210 | WP_000126788.1 | hypothetical protein | - |
| YDC107_RS24205 () | 4944054..4945148 | + | 1095 | WP_000089448.1 | terminase small subunit | - |
| YDC107_RS24210 () | 4945129..4946430 | + | 1302 | WP_000625348.1 | terminase family protein | - |
| YDC107_RS24215 () | 4946433..4947839 | + | 1407 | WP_000763701.1 | DUF4055 domain-containing protein | - |
| YDC107_RS24220 () | 4947823..4948935 | + | 1113 | WP_001363932.1 | hypothetical protein | - |
| YDC107_RS24225 () | 4949040..4949804 | + | 765 | WP_000770042.1 | hypothetical protein | - |
| YDC107_RS24230 () | 4949903..4951042 | + | 1140 | WP_020233804.1 | hypothetical protein | - |
| YDC107_RS24235 () | 4951265..4951660 | + | 396 | WP_000634214.1 | hypothetical protein | - |
| YDC107_RS24240 () | 4951660..4952043 | + | 384 | WP_000524260.1 | hypothetical protein | - |
| YDC107_RS24245 () | 4952044..4952424 | + | 381 | WP_001029815.1 | hypothetical protein | - |
| YDC107_RS24250 () | 4952421..4952813 | + | 393 | WP_000673077.1 | hypothetical protein | - |
| YDC107_RS24255 () | 4952840..4953802 | + | 963 | WP_001328756.1 | hypothetical protein | - |
| YDC107_RS24260 () | 4953953..4954312 | + | 360 | WP_122452218.1 | hypothetical protein | - |
| YDC107_RS24265 () | 4954420..4954620 | + | 201 | WP_032139919.1 | hypothetical protein | - |
| YDC107_RS24270 () | 4954784..4958017 | + | 3234 | WP_023153989.1 | phage tail tape measure protein | - |
| YDC107_RS24275 () | 4958052..4958347 | + | 296 | Protein_4728 | phage tail protein | - |
| YDC107_RS24280 () | 4958347..4959045 | + | 699 | WP_001152432.1 | phage minor tail protein L | - |
| YDC107_RS24285 () | 4959051..4959794 | + | 744 | WP_001351716.1 | C40 family peptidase | - |
| YDC107_RS24290 () | 4959731..4960333 | + | 603 | WP_049286672.1 | tail assembly protein | - |
| YDC107_RS24295 () | 4960394..4963873 | + | 3480 | WP_021523093.1 | host specificity protein J | - |
| YDC107_RS24300 () | 4963941..4964540 | + | 600 | WP_001542091.1 | Outer membrane protein X | VF |
| YDC107_RS24305 () | 4964605..4966980 | + | 2376 | WP_105955870.1 | prophage tail fiber N-terminal domain-containing protein | - |
| YDC107_RS24310 () | 4966980..4967261 | + | 282 | WP_000654155.1 | hypothetical protein | - |
| YDC107_RS24315 () | 4967271..4968311 | + | 1041 | WP_001314683.1 | tail fiber domain-containing protein | - |
| YDC107_RS24320 () | 4968354..4968647 | + | 294 | WP_001405873.1 | hypothetical protein | - |
| YDC107_RS24325 () | 4968917..4969068 | - | 152 | Protein_4738 | DinI family protein | - |
| YDC107_RS24330 () | 4969193..4969987 | - | 795 | WP_000354607.1 | hypothetical protein | - |
| YDC107_RS24335 () | 4970460..4971317 | - | 858 | WP_000968125.1 | iron/manganese ABC transporter permease subunit SitD | - |
| YDC107_RS24340 () | 4971314..4972171 | - | 858 | WP_001101728.1 | iron/manganese ABC transporter permease subunit SitC | - |
| YDC107_RS24345 () | 4972168..4972995 | - | 828 | WP_000983718.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|