MGE detailed information
MGE type: Genomic_island MGE length: 28154 bp
Accession: NZ_CP025707 Location: 3678223..3706376 Organism: Escherichia coli strain YDC107 Replicon: chromosome
Accession: NZ_CP025707 Location: 3678223..3706376 Organism: Escherichia coli strain YDC107 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YDC107_RS18020 () | 3673606..3674877 | - | 1272 | WP_001098396.1 | maltoporin | - |
| YDC107_RS18025 () | 3675148..3676218 | + | 1071 | WP_000837747.1 | LacI family DNA-binding transcriptional regulator | - |
| YDC107_RS18030 () | 3676349..3677046 | - | 698 | Protein_3510 | IS1 family transposase | - |
| YDC107_RS18035 () | 3677344..3677982 | - | 639 | WP_000684813.1 | RpiB/LacA/LacB family sugar-phosphate isomerase | - |
| YDC107_RS18040 () | 3678223..3679392 | + | 1170 | WP_001051733.1 | oligogalacturonate lyase | - |
| YDC107_RS18045 () | 3679425..3680225 | + | 801 | WP_000345753.1 | 5-keto-D-gluconate 5-reductase | VF |
| YDC107_RS18050 () | 3680280..3680603 | + | 324 | WP_000497518.1 | cupin domain-containing protein | - |
| YDC107_RS18055 () | 3680969..3682483 | + | 1515 | WP_000134162.1 | MFS transporter | - |
| YDC107_RS18060 () | 3682485..3684719 | + | 2235 | WP_042047048.1 | exopolygalacturonate lyase | - |
| YDC107_RS18065 () | 3684827..3685792 | + | 966 | WP_042047046.1 | hypothetical protein | - |
| YDC107_RS18070 () | 3686103..3686459 | - | 357 | WP_042047045.1 | CPBP family intramembrane metalloprotease | - |
| YDC107_RS18075 () | 3686555..3686740 | - | 186 | WP_020233942.1 | hypothetical protein | - |
| YDC107_RS18080 () | 3686739..3687719 | + | 981 | WP_020233941.1 | IS5 family transposase ISKpn26 | Transposase |
| YDC107_RS18085 () | 3687867..3690982 | - | 3116 | Protein_3521 | HsdR family type I site-specific deoxyribonuclease | - |
| YDC107_RS18090 () | 3691104..3692318 | - | 1215 | WP_042047042.1 | restriction endonuclease subunit S | - |
| YDC107_RS18095 () | 3692315..3693871 | - | 1557 | WP_000200813.1 | type I restriction-modification system subunit M | - |
| YDC107_RS18100 () | 3694135..3695007 | + | 873 | WP_001407301.1 | GTPase family protein | - |
| YDC107_RS18105 () | 3695379..3696416 | + | 1038 | WP_105955846.1 | AIDA repeat-containing protein | - |
| YDC107_RS18110 () | 3696432..3696908 | + | 477 | WP_001186727.1 | RadC family protein | - |
| YDC107_RS18115 () | 3696971..3697192 | + | 222 | WP_000692346.1 | DUF987 domain-containing protein | - |
| YDC107_RS18120 () | 3697207..3697851 | + | 645 | Protein_3528 | antitoxin of toxin-antitoxin stability system | - |
| YDC107_RS18125 () | 3697901..3698269 | + | 369 | WP_105955847.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| YDC107_RS18130 () | 3698359..3698736 | + | 378 | WP_000854726.1 | TA system toxin CbtA family protein | Toxin Detail |
| YDC107_RS18135 () | 3698733..3699221 | + | 489 | WP_042047259.1 | hypothetical protein | - |
| YDC107_RS18140 () | 3699233..3699430 | + | 198 | WP_000839267.1 | DUF957 domain-containing protein | - |
| YDC107_RS18145 () | 3699515..3700363 | + | 849 | WP_042047262.1 | DUF4942 domain-containing protein | - |
| YDC107_RS18150 () | 3700456..3701775 | - | 1320 | WP_020233731.1 | Prophage integrase IntA ; Integrase | Integrase |
| YDC107_RS18155 () | 3702001..3702159 | - | 159 | Protein_3535 | integrase | - |
| YDC107_RS18160 () | 3702251..3702353 | - | 103 | Protein_3536 | transcriptional regulator | - |
| YDC107_RS18165 () | 3702350..3702820 | - | 471 | WP_000201185.1 | hypothetical protein | - |
| YDC107_RS18170 () | 3702866..3703006 | - | 141 | WP_001308408.1 | ash family protein | - |
| YDC107_RS18175 () | 3703167..3706376 | - | 3210 | WP_020233732.1 | RNA-directed DNA polymerase | - |
| YDC107_RS18180 () | 3706671..3707474 | + | 804 | WP_023144380.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| YDC107_RS18185 () | 3707461..3708381 | + | 921 | WP_001521912.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| YDC107_RS18190 () | 3708464..3708709 | - | 246 | Protein_3542 | hypothetical protein | - |
| YDC107_RS18195 () | 3708815..3709699 | - | 885 | WP_001119037.1 | LysR family transcriptional regulator | - |
| YDC107_RS18200 () | 3709964..3711022 | + | 1059 | WP_122452191.1 | alpha/beta hydrolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|