MGE detailed information
MGE type: Prophage MGE length: 68672 bp
Accession: NZ_CP025707 Location: 156..68827 Organism: Escherichia coli strain YDC107 Replicon: chromosome
Accession: NZ_CP025707 Location: 156..68827 Organism: Escherichia coli strain YDC107 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YDC107_RS00005 () | 49..437 | + | 389 | Protein_0 | phage tail assembly protein T | - |
| YDC107_RS00010 () | 430..3005 | + | 2576 | Protein_1 | phage tail tape measure protein | - |
| YDC107_RS00015 () | 3002..3330 | + | 329 | Protein_2 | phage tail protein | - |
| YDC107_RS00020 () | 3330..4026 | + | 697 | Protein_3 | phage minor tail protein L | - |
| YDC107_RS00025 () | 4226..4778 | + | 553 | Protein_4 | endopeptidase | - |
| YDC107_RS00030 () | 4724..5346 | + | 623 | Protein_5 | tail assembly protein | - |
| YDC107_RS00035 () | 5392..5732 | - | 341 | Protein_6 | superoxide dismutase | - |
| YDC107_RS00040 () | 5686..6102 | + | 417 | WP_143358295.1 | hypothetical protein | - |
| YDC107_RS00045 () | 6221..6985 | + | 765 | Protein_8 | host specificity protein J | - |
| YDC107_RS00050 () | 7008..7250 | + | 243 | Protein_9 | hypothetical protein | - |
| YDC107_RS00055 () | 7622..8338 | + | 717 | WP_143358296.1 | DUF1983 domain-containing protein | - |
| YDC107_RS00060 () | 8260..8487 | + | 228 | WP_143358298.1 | hypothetical protein | - |
| YDC107_RS00065 () | 8605..8886 | + | 282 | WP_143358297.1 | hypothetical protein | - |
| YDC107_RS00070 () | 8954..9553 | + | 600 | Protein_13 | Outer membrane protein X | VF |
| YDC107_RS00075 () | 9618..11995 | + | 2378 | Protein_14 | phage tail protein | - |
| YDC107_RS00080 () | 11995..12276 | + | 282 | WP_105955746.1 | hypothetical protein | - |
| YDC107_RS00085 () | 12286..12864 | + | 579 | Protein_16 | hypothetical protein | - |
| YDC107_RS00090 () | 12877..13322 | + | 446 | Protein_17 | tail fiber domain-containing protein | - |
| YDC107_RS00095 () | 13365..13652 | + | 288 | WP_097499556.1 | hypothetical protein | - |
| YDC107_RS00100 () | 13688..14687 | - | 1000 | Protein_19 | ParB/RepB/Spo0J family plasmid partition protein | - |
| YDC107_RS00105 () | 14684..15853 | - | 1170 | WP_001555445.1 | plasmid-partitioning protein SopA | - |
| YDC107_RS00110 () | 16767..17936 | + | 1170 | WP_001555445.1 | plasmid-partitioning protein SopA | - |
| YDC107_RS00115 () | 17933..18922 | + | 990 | WP_001555444.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| YDC107_RS00120 () | 18971..19258 | - | 288 | WP_097499556.1 | hypothetical protein | - |
| YDC107_RS00125 () | 19301..20341 | - | 1041 | WP_105955747.1 | tail fiber domain-containing protein | - |
| YDC107_RS00130 () | 20351..20632 | - | 282 | WP_105955746.1 | hypothetical protein | - |
| YDC107_RS00135 () | 20632..23010 | - | 2379 | WP_105955748.1 | prophage tail fiber N-terminal domain-containing protein | - |
| YDC107_RS00140 () | 23075..23674 | - | 600 | WP_001228252.1 | Outer membrane protein X | VF |
| YDC107_RS00145 () | 23742..27221 | - | 3480 | WP_105955749.1 | host specificity protein J | - |
| YDC107_RS00150 () | 27282..27914 | - | 633 | WP_000090917.1 | tail assembly protein | - |
| YDC107_RS00155 () | 27851..28594 | - | 744 | WP_105955750.1 | C40 family peptidase | - |
| YDC107_RS00160 () | 28600..29298 | - | 699 | WP_001152622.1 | phage minor tail protein L | - |
| YDC107_RS00165 () | 29298..29627 | - | 330 | WP_000847331.1 | phage tail protein | - |
| YDC107_RS00170 () | 29624..32203 | - | 2580 | WP_000840197.1 | phage tail tape measure protein | - |
| YDC107_RS00175 () | 32196..32630 | - | 435 | WP_000459480.1 | phage tail assembly protein T | - |
| YDC107_RS00180 () | 32612..33025 | - | 414 | WP_105955751.1 | phage minor tail protein G | - |
| YDC107_RS00185 () | 33041..33667 | - | 627 | WP_077780745.1 | phage tail protein | - |
| YDC107_RS00190 () | 33646..33810 | - | 165 | WP_105955753.1 | hypothetical protein | - |
| YDC107_RS00195 () | 33788..34183 | - | 396 | WP_000683145.1 | phage minor tail U family protein | - |
| YDC107_RS00200 () | 34180..34758 | - | 579 | WP_000975070.1 | phage tail protein | - |
| YDC107_RS00205 () | 34770..35121 | - | 352 | Protein_40 | phage tail protein | - |
| YDC107_RS00210 () | 35133..35525 | - | 393 | Protein_41 | DNA-packaging protein FI | - |
| YDC107_RS00215 () | 35567..36591 | - | 1025 | Protein_42 | major capsid protein | - |
| YDC107_RS00220 () | 36646..36978 | - | 333 | WP_001708751.1 | head decoration protein | - |
| YDC107_RS00225 () | 36988..38307 | - | 1320 | WP_020233915.1 | S49 family peptidase | - |
| YDC107_RS00230 () | 38288..39889 | - | 1602 | WP_001309906.1 | phage portal protein | - |
| YDC107_RS00235 () | 39886..40092 | - | 207 | WP_000198149.1 | gpW family protein | - |
| YDC107_RS00240 () | 40089..42014 | - | 1926 | WP_105955754.1 | phage terminase large subunit family protein | - |
| YDC107_RS00245 () | 41989..42534 | - | 546 | WP_000453587.1 | DNA-packaging protein | - |
| YDC107_RS00250 () | 42923..43156 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| YDC107_RS00255 () | 43214..43624 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| YDC107_RS00260 () | 43776..43949 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| YDC107_RS00265 () | 44121..44276 | - | 156 | WP_001309517.1 | hypothetical protein | - |
| YDC107_RS00270 () | 44356..44421 | - | 66 | WP_120795388.1 | hypothetical protein | - |
| YDC107_RS00275 () | 44424..44612 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| YDC107_RS00280 () | 44623..44835 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| YDC107_RS00285 () | 45198..45695 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| YDC107_RS00290 () | 45692..46225 | - | 534 | WP_001092971.1 | lysozyme | - |
| YDC107_RS00295 () | 46222..46533 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| YDC107_RS00300 () | 46538..46753 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| YDC107_RS00305 () | 47507..47722 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| YDC107_RS00310 () | 48023..48235 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| YDC107_RS00315 () | 48290..48379 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| YDC107_RS00320 () | 48657..49409 | - | 753 | Protein_63 | antitermination protein | - |
| YDC107_RS00325 () | 49423..50472 | - | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| YDC107_RS00330 () | 50474..50752 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| YDC107_RS00335 () | 50819..51070 | - | 252 | WP_000980994.1 | hypothetical protein | - |
| YDC107_RS00340 () | 51287..51442 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| YDC107_RS00345 () | 51514..51801 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| YDC107_RS00350 () | 51801..52040 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| YDC107_RS00355 () | 52065..52370 | + | 306 | WP_001326990.1 | hypothetical protein | - |
| YDC107_RS00360 () | 52573..52905 | + | 333 | WP_001301033.1 | protein FlxA | - |
| YDC107_RS00365 () | 53342..54655 | - | 1314 | WP_105955755.1 | ISNCY family transposase ISCARN112 | Transposase |
| YDC107_RS00370 () | 54833..55015 | + | 183 | WP_000955178.1 | hypothetical protein | - |
| YDC107_RS00375 () | 54990..55169 | - | 180 | WP_000786209.1 | hypothetical protein | - |
| YDC107_RS00380 () | 55933..56337 | + | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| YDC107_RS00385 () | 56334..56681 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| YDC107_RS00390 () | 56730..58265 | + | 1536 | WP_001333339.1 | IS66 family transposase ISEc22 | Transposase |
| YDC107_RS00395 () | 58785..59141 | - | 357 | WP_001310834.1 | class I SAM-dependent methyltransferase | - |
| YDC107_RS00400 () | 59138..59560 | - | 423 | WP_001151262.1 | DUF977 family protein | - |
| YDC107_RS00405 () | 59601..60566 | - | 966 | WP_000054512.1 | hypothetical protein | - |
| YDC107_RS00410 () | 60547..61068 | - | 522 | WP_000705358.1 | hypothetical protein | - |
| YDC107_RS00415 () | 61052..61282 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| YDC107_RS00420 () | 61366..61773 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| YDC107_RS00425 () | 61940..62095 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| YDC107_RS00430 () | 62255..62473 | + | 219 | WP_001171942.1 | hypothetical protein | - |
| YDC107_RS00435 () | 62477..62641 | - | 165 | WP_001329848.1 | hypothetical protein | - |
| YDC107_RS00440 () | 63041..63229 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| YDC107_RS00445 () | 63226..63417 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| YDC107_RS00450 () | 63510..65981 | + | 2472 | WP_000048342.1 | exonuclease | - |
| YDC107_RS00455 () | 66069..66305 | + | 237 | WP_001296941.1 | excisionase family protein | - |
| YDC107_RS00460 () | 66340..67620 | + | 1281 | WP_000876958.1 | Putative defective protein IntQ ; Integrase | Integrase |
| YDC107_RS00465 () | 67640..67750 | - | 111 | WP_105955756.1 | transporter | - |
| YDC107_RS00470 () | 67808..68827 | - | 1020 | WP_000836037.1 | Zn-dependent oxidoreductase | - |
| YDC107_RS00475 () | 68839..70053 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| YDC107_RS00480 () | 70259..70585 | - | 327 | WP_001314753.1 | YnfA family protein | - |
| YDC107_RS00485 () | 70720..71061 | + | 342 | WP_000705205.1 | DUF1283 family protein | - |
| YDC107_RS00490 () | 71096..71656 | + | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| YDC107_RS00495 () | 71659..72369 | - | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| YDC107_RS00500 () | 72477..72782 | + | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|