MGE detailed information
MGE type: Conjugative plasmid MGE length: 84952 bp
Accession: NZ_CP025625 Location: 1..84952 Organism: Escherichia coli strain SCEC020007 Replicon: plasmid pBOKZ_020007
Accession: NZ_CP025625 Location: 1..84952 Organism: Escherichia coli strain SCEC020007 Replicon: plasmid pBOKZ_020007
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0634_RS25975 () | 1..873 | + | 873 | WP_000729438.1 | incFII family plasmid replication initiator RepA | - |
| C0634_RS26370 () | 1568..1726 | + | 159 | WP_032151498.1 | hypothetical protein | - |
| C0634_RS00020 () | 1781..2050 | + | 270 | WP_000079928.1 | hypothetical protein | Antitoxin Detail |
| C0634_RS00025 () | 2047..2328 | + | 282 | WP_025750222.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| C0634_RS00035 () | 2842..3459 | - | 618 | WP_025750220.1 | hypothetical protein | - |
| C0634_RS00040 () | 3768..4465 | - | 698 | Protein_5 | IS1 family transposase | - |
| C0634_RS00055 () | 4699..6018 | - | 1320 | WP_160470889.1 | cation:dicarboxylase symporter family transporter | - |
| C0634_RS00060 () | 6230..6927 | + | 698 | Protein_7 | IS1 family transposase | - |
| C0634_RS26375 () | 6963..7394 | - | 432 | Protein_8 | hypothetical protein | - |
| C0634_RS26380 () | 7388..7717 | + | 330 | Protein_9 | tyrosine-type recombinase/integrase | - |
| C0634_RS00075 () | 8301..8933 | + | 633 | WP_000312331.1 | ParA family protein | - |
| C0634_RS26385 () | 8933..9307 | + | 375 | WP_000752652.1 | hypothetical protein | - |
| C0634_RS00085 () | 9545..10519 | + | 975 | WP_025749785.1 | StbA family protein | - |
| C0634_RS00090 () | 10523..10915 | + | 393 | WP_000272884.1 | plasmid partitioning/stability family protein | - |
| C0634_RS00105 () | 11596..12498 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| C0634_RS00110 () | 12495..12806 | + | 312 | WP_031942433.1 | hypothetical protein | - |
| C0634_RS00115 () | 12882..13565 | + | 684 | WP_000086147.1 | DNA methylase | - |
| C0634_RS00120 () | 13566..13787 | + | 222 | WP_001104893.1 | hypothetical protein | - |
| C0634_RS00125 () | 13801..14235 | + | 435 | WP_001578114.1 | DUF1380 family protein | - |
| C0634_RS26560 () | 14280..15050 | + | 771 | WP_001584932.1 | hypothetical protein | - |
| C0634_RS00140 () | 15587..15889 | + | 303 | WP_001589340.1 | antirestriction protein | - |
| C0634_RS00145 () | 15936..16358 | + | 423 | WP_000271732.1 | DUF1380 family protein | - |
| C0634_RS00150 () | 16355..16546 | + | 192 | WP_001024836.1 | hypothetical protein | - |
| C0634_RS26565 () | 16879..16947 | - | 69 | Protein_23 | pilus protein | - |
| C0634_RS00165 () | 17316..17843 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| C0634_RS00170 () | 17901..18134 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| C0634_RS00175 () | 18193..20151 | + | 1959 | WP_025749133.1 | ParB/RepB/Spo0J family partition protein | - |
| C0634_RS00180 () | 20206..20640 | + | 435 | WP_025749130.1 | conjugation system SOS inhibitor PsiB | - |
| C0634_RS00185 () | 20637..21356 | + | 720 | WP_025749128.1 | plasmid SOS inhibition protein A | - |
| C0634_RS00190 () | 21353..21949 | + | 597 | WP_000977998.1 | hypothetical protein | - |
| C0634_RS00200 () | 22411..22911 | + | 501 | WP_014065718.1 | antirestriction protein ArdA | - |
| C0634_RS00215 () | 23644..24078 | + | 435 | WP_000218862.1 | hypothetical protein | - |
| C0634_RS00220 () | 24171..24437 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| C0634_RS00225 () | 24614..25003 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| C0634_RS00230 () | 25000..25890 | + | 891 | WP_087523565.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| C0634_RS00235 () | 25890..26135 | + | 246 | WP_001260882.1 | hypothetical protein | - |
| C0634_RS00240 () | 26166..26417 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| C0634_RS00245 () | 26451..26648 | - | 198 | Protein_37 | hypothetical protein | - |
| C0634_RS00255 () | 26997..27845 | + | 849 | WP_013307867.1 | DUF4942 domain-containing protein | - |
| C0634_RS00260 () | 27932..28267 | - | 336 | WP_000157091.1 | hypothetical protein | - |
| C0634_RS00265 () | 28500..28832 | + | 333 | WP_001291057.1 | hypothetical protein | - |
| C0634_RS00270 () | 28844..31564 | + | 2721 | WP_000991405.1 | relaxase/mobilization nuclease domain-containing protein | - |
| C0634_RS00275 () | 31785..34085 | - | 2301 | WP_013307869.1 | TraM recognition domain-containing protein | - |
| C0634_RS00280 () | 34066..35190 | - | 1125 | WP_000152382.1 | DsbC family protein | - |
| C0634_RS26000 () | 35187..36512 | - | 1326 | WP_024186660.1 | IncI1-type conjugal transfer protein TrbA | - |
| C0634_RS00290 () | 37153..37404 | + | 252 | WP_001081067.1 | hypothetical protein | - |
| C0634_RS26400 () | 37467..37643 | - | 177 | WP_001054907.1 | hypothetical protein | - |
| C0634_RS00295 () | 37793..38260 | - | 468 | WP_000598962.1 | thermonuclease family protein | - |
| C0634_RS00300 () | 38419..39042 | + | 624 | WP_001155247.1 | DNA-binding protein | - |
| C0634_RS00310 () | 39240..39455 | - | 216 | WP_000266543.1 | hypothetical protein | - |
| C0634_RS00315 () | 39459..39827 | - | 369 | WP_125922850.1 | hypothetical protein | - |
| C0634_RS00325 () | 40118..40360 | - | 243 | WP_000650923.1 | hypothetical protein | - |
| C0634_RS00330 () | 40690..40842 | + | 153 | WP_001335079.1 | Hok/Gef family protein | - |
| C0634_RS00335 () | 40980..42566 | - | 1587 | WP_000004564.1 | TnsA endonuclease N-terminal domain-containing protein | - |
| C0634_RS00340 () | 42840..43487 | - | 648 | WP_087523569.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| C0634_RS00345 () | 43575..45734 | - | 2160 | WP_000691811.1 | DotA/TraY family protein | - |
| C0634_RS00350 () | 45809..46378 | - | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
| C0634_RS00355 () | 46375..47580 | - | 1206 | WP_001189548.1 | conjugal transfer protein TraW | - |
| C0634_RS00360 () | 47538..48158 | - | 621 | WP_087523571.1 | conjugal transfer protein TraV | - |
| C0634_RS00365 () | 48158..51202 | - | 3045 | WP_001024766.1 | conjugal transfer protein | - |
| C0634_RS00375 () | 51497..52315 | - | 819 | WP_000753550.1 | hypothetical protein | - |
| C0634_RS00380 () | 52230..52481 | - | 252 | WP_001277573.1 | hypothetical protein | - |
| C0634_RS00385 () | 52538..52936 | - | 399 | WP_000088813.1 | hypothetical protein | - |
| C0634_RS00390 () | 52983..53510 | - | 528 | WP_001407937.1 | conjugal transfer protein TraQ | - |
| C0634_RS00395 () | 53510..54223 | - | 714 | WP_087523572.1 | conjugal transfer protein TraP | - |
| C0634_RS00400 () | 54220..55551 | - | 1332 | WP_001288254.1 | conjugal transfer protein TraO | - |
| C0634_RS00405 () | 55555..56529 | - | 975 | WP_000547383.1 | conjugal transfer protein TraN | - |
| C0634_RS00410 () | 56540..57235 | - | 696 | WP_001681668.1 | DotI/IcmL family type IV secretion protein | - |
| C0634_RS00415 () | 57247..57597 | - | 351 | WP_001056367.1 | hypothetical protein | - |
| C0634_RS00420 () | 57614..61675 | - | 4062 | WP_087523573.1 | DNA primase | - |
| C0634_RS00425 () | 62029..62610 | - | 582 | WP_025750394.1 | hypothetical protein | - |
| C0634_RS00430 () | 62842..63132 | - | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| C0634_RS00435 () | 63129..64277 | - | 1149 | WP_013307876.1 | plasmid transfer ATPase TraJ | - |
| C0634_RS00440 () | 64261..65097 | - | 837 | WP_000745049.1 | type IV secretory system conjugative DNA transfer family protein | - |
| C0634_RS00445 () | 65094..65552 | - | 459 | WP_001170111.1 | DotD/TraH family lipoprotein | - |
| C0634_RS00450 () | 65656..66858 | - | 1203 | WP_013307879.1 | conjugal transfer protein TraF | - |
| C0634_RS00455 () | 66960..67781 | - | 822 | WP_087523574.1 | conjugal transfer protein TraE | - |
| C0634_RS00460 () | 67994..69118 | - | 1125 | WP_013307880.1 | site-specific integrase | - |
| C0634_RS00465 () | 69215..69412 | + | 198 | WP_001356717.1 | hypothetical protein | - |
| C0634_RS00485 () | 70272..70649 | + | 378 | WP_052972533.1 | phage tail protein | - |
| C0634_RS00490 () | 70654..71976 | - | 1323 | WP_053904788.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| C0634_RS00495 () | 71994..72620 | - | 627 | WP_013307883.1 | prepilin peptidase | - |
| C0634_RS00500 () | 72636..73121 | - | 486 | WP_001080767.1 | lytic transglycosylase domain-containing protein | - |
| C0634_RS00505 () | 73166..73702 | - | 537 | WP_000111521.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| C0634_RS00510 () | 73764..74858 | - | 1095 | WP_000697154.1 | type II secretion system F family protein | - |
| C0634_RS00515 () | 74860..76368 | - | 1509 | WP_000880806.1 | Flp pilus assembly complex ATPase component TadA | - |
| C0634_RS00520 () | 76471..76929 | - | 459 | WP_000095887.1 | type IV pilus biogenesis protein PilP | - |
| C0634_RS00525 () | 76919..78214 | - | 1296 | WP_000129885.1 | type 4b pilus protein PilO2 | - |
| C0634_RS00530 () | 78235..79854 | - | 1620 | WP_001035562.1 | PilN family type IVB pilus formation outer membrane protein | - |
| C0634_RS00535 () | 79886..80323 | - | 438 | WP_000539952.1 | type IV pilus biogenesis protein PilM | - |
| C0634_RS00540 () | 80327..81397 | - | 1071 | WP_000730430.1 | TcpQ domain-containing protein | - |
| C0634_RS00545 () | 81638..81958 | - | 321 | WP_001447108.1 | hypothetical protein | - |
| C0634_RS00550 () | 82074..82316 | - | 243 | WP_021515452.1 | PilI type IV pilus biogenesis protein | - |
| C0634_RS26405 () | 82397..82540 | - | 144 | WP_000176500.1 | hypothetical protein | - |
| C0634_RS00560 () | 82807..83469 | - | 663 | WP_005082527.1 | hypothetical protein | - |
| C0634_RS00565 () | 83609..84250 | - | 642 | WP_021515453.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|