MGE detailed information
MGE type: Prophage MGE length: 45599 bp
Accession: NZ_CP024996 Location: 2323228..2368826 Organism: Herbaspirillum rubrisubalbicans strain DSM 11543 Replicon: chromosome
Accession: NZ_CP024996 Location: 2323228..2368826 Organism: Herbaspirillum rubrisubalbicans strain DSM 11543 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RC54_RS10440 () | 2319544..2319747 | - | 204 | WP_008328299.1 | DNA-directed RNA polymerase subunit omega | - |
| RC54_RS10445 () | 2319823..2320461 | - | 639 | WP_017451015.1 | guanylate kinase | - |
| RC54_RS10450 () | 2320527..2321441 | - | 915 | WP_082686017.1 | YicC family protein | - |
| RC54_RS10455 () | 2321770..2322498 | + | 729 | WP_061788826.1 | ribonuclease PH | - |
| RC54_RS10460 () | 2322641..2323231 | + | 591 | WP_061788827.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| RC54_RS10465 () | 2323228..2324481 | + | 1254 | WP_061788828.1 | hypothetical protein | VF |
| RC54_RS10470 () | 2324624..2325823 | + | 1200 | WP_058895263.1 | HDOD domain-containing protein | - |
| RC54_RS10475 () | 2325829..2327922 | + | 2094 | WP_061788829.1 | hypothetical protein | VF |
| RC54_RS10480 () | 2328170..2328703 | + | 534 | WP_058895265.1 | hypothetical protein | VF |
| RC54_RS10485 () | 2328751..2329062 | - | 312 | WP_058895266.1 | HigA family addiction module antidote protein | Antitoxin Detail |
| RC54_RS10490 () | 2329073..2329360 | - | 288 | WP_061788830.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| RC54_RS10495 () | 2329705..2329953 | - | 249 | WP_208652674.1 | AlpA family phage regulatory protein | - |
| RC54_RS10500 () | 2329950..2330840 | - | 891 | WP_061788831.1 | DUF3850 domain-containing protein | - |
| RC54_RS10505 () | 2330837..2331739 | - | 903 | WP_082803063.1 | hypothetical protein | - |
| RC54_RS10510 () | 2331736..2332497 | - | 762 | WP_061788832.1 | hypothetical protein | - |
| RC54_RS10515 () | 2332494..2332958 | - | 465 | WP_061788833.1 | hypothetical protein | - |
| RC54_RS10520 () | 2332955..2334787 | - | 1833 | WP_164471199.1 | ParB/RepB/Spo0J family partition protein | - |
| RC54_RS25110 () | 2334801..2335079 | - | 279 | WP_164471200.1 | hypothetical protein | - |
| RC54_RS10525 () | 2335084..2335335 | - | 252 | WP_123020424.1 | hypothetical protein | - |
| RC54_RS25115 () | 2335332..2335472 | - | 141 | WP_156481375.1 | hypothetical protein | - |
| RC54_RS10530 () | 2335469..2335774 | - | 306 | WP_123020425.1 | hypothetical protein | - |
| RC54_RS10535 () | 2335771..2336052 | - | 282 | WP_061790768.1 | hypothetical protein | - |
| RC54_RS25120 () | 2336049..2336207 | - | 159 | WP_156481383.1 | hypothetical protein | - |
| RC54_RS10540 () | 2336393..2336788 | - | 396 | WP_123020426.1 | helix-turn-helix domain-containing protein | - |
| RC54_RS10545 () | 2336861..2337136 | + | 276 | WP_061790692.1 | helix-turn-helix domain-containing protein | - |
| RC54_RS25125 () | 2337479..2338093 | + | 615 | WP_156481363.1 | hypothetical protein | - |
| RC54_RS10560 () | 2338345..2338785 | + | 441 | WP_082803228.1 | hypothetical protein | - |
| RC54_RS10565 () | 2338775..2341285 | + | 2511 | WP_061790687.1 | hypothetical protein | - |
| RC54_RS10575 () | 2341646..2341990 | + | 345 | WP_156481362.1 | hypothetical protein | - |
| RC54_RS10580 () | 2342001..2342702 | + | 702 | WP_061790684.1 | hypothetical protein | - |
| RC54_RS10585 () | 2342858..2343319 | + | 462 | WP_156481361.1 | hypothetical protein | - |
| RC54_RS10590 () | 2343458..2344045 | + | 588 | WP_061790682.1 | hypothetical protein | - |
| RC54_RS10595 () | 2344161..2344676 | + | 516 | WP_082803227.1 | terminase small subunit | - |
| RC54_RS10600 () | 2344657..2346696 | + | 2040 | WP_061790680.1 | phage terminase large subunit family protein | - |
| RC54_RS10605 () | 2346705..2346938 | + | 234 | WP_061790679.1 | hypothetical protein | - |
| RC54_RS10610 () | 2346935..2348503 | + | 1569 | WP_123020427.1 | phage portal protein | - |
| RC54_RS10615 () | 2348556..2349986 | + | 1431 | WP_123020428.1 | S49 family peptidase | - |
| RC54_RS10620 () | 2350031..2350405 | + | 375 | WP_061790765.1 | DUF2190 family protein | - |
| RC54_RS10625 () | 2350460..2351392 | + | 933 | WP_123020429.1 | phage capsid protein | - |
| RC54_RS25130 () | 2351463..2351624 | + | 162 | WP_156481372.1 | hypothetical protein | - |
| RC54_RS10630 () | 2351631..2351927 | + | 297 | WP_123020430.1 | hypothetical protein | - |
| RC54_RS10635 () | 2351929..2352468 | + | 540 | WP_061790741.1 | hypothetical protein | - |
| RC54_RS10640 () | 2352479..2352667 | + | 189 | WP_061790740.1 | DUF2635 domain-containing protein | - |
| RC54_RS10645 () | 2352664..2354148 | + | 1485 | WP_123020431.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| RC54_RS10650 () | 2354161..2354523 | + | 363 | WP_061790767.1 | phage tail tube protein | - |
| RC54_RS10655 () | 2354520..2354960 | + | 441 | WP_123020432.1 | phage tail assembly protein | - |
| RC54_RS25135 () | 2355115..2355300 | + | 186 | WP_061790722.1 | hypothetical protein | - |
| RC54_RS10660 () | 2355370..2356968 | + | 1599 | WP_156481368.1 | hypothetical protein | - |
| RC54_RS10665 () | 2356981..2358180 | + | 1200 | WP_082803237.1 | DNA circularization N-terminal domain-containing protein | - |
| RC54_RS10670 () | 2358183..2359355 | + | 1173 | WP_061790719.1 | hypothetical protein | - |
| RC54_RS10675 () | 2359352..2359945 | + | 594 | WP_082803236.1 | phage baseplate assembly protein V | - |
| RC54_RS10680 () | 2359945..2360412 | + | 468 | WP_061790717.1 | phage GP46 family protein | - |
| RC54_RS10685 () | 2360412..2361467 | + | 1056 | WP_123020433.1 | baseplate J/gp47 family protein | - |
| RC54_RS10690 () | 2361458..2362054 | + | 597 | WP_061790735.1 | DUF2313 domain-containing protein | - |
| RC54_RS10695 () | 2362051..2362878 | + | 828 | WP_082803241.1 | hypothetical protein | - |
| RC54_RS10700 () | 2362935..2363321 | + | 387 | WP_061790736.1 | hypothetical protein | - |
| RC54_RS10705 () | 2363363..2363800 | + | 438 | WP_061790737.1 | hypothetical protein | - |
| RC54_RS10710 () | 2363797..2364096 | + | 300 | WP_061790738.1 | hypothetical protein | - |
| RC54_RS10715 () | 2364093..2364668 | + | 576 | WP_123020434.1 | pyocin R, lytic enzyme | - |
| RC54_RS10720 () | 2364665..2365165 | + | 501 | WP_061790402.1 | lysis system i-spanin subunit Rz | - |
| RC54_RS10725 () | 2365192..2366085 | - | 894 | WP_164471201.1 | hypothetical protein | - |
| RC54_RS10730 () | 2366511..2367203 | + | 693 | WP_061790404.1 | FRG domain-containing protein | - |
| RC54_RS25140 () | 2367320..2367490 | + | 171 | WP_156481336.1 | hypothetical protein | - |
| RC54_RS10735 () | 2367594..2368826 | - | 1233 | WP_061790405.1 | hypothetical protein ; Integrase | Integrase |
| RC54_RS10745 () | 2369229..2370482 | - | 1254 | WP_061790406.1 | aspartate kinase | - |
| RC54_RS10750 () | 2371011..2371289 | - | 279 | WP_061790407.1 | DUF4148 domain-containing protein | - |
| RC54_RS10755 () | 2371540..2372451 | + | 912 | WP_061790408.1 | LysR family transcriptional regulator | - |
| RC54_RS10760 () | 2372472..2372900 | - | 429 | WP_017451028.1 | thioredoxin family protein | - |
| RC54_RS10765 () | 2373012..2373731 | + | 720 | WP_061790409.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|