MGE detailed information
MGE type: Prophage MGE length: 45245 bp
Accession: NZ_CP024978 Location: 582..45826 Organism: Escherichia coli strain CV839-15 Replicon: chromosome
Accession: NZ_CP024978 Location: 582..45826 Organism: Escherichia coli strain CV839-15 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV83915_RS02260 () | 582..911 | - | 330 | WP_000847402.1 | phage tail protein | - |
| CV83915_RS02265 () | 908..3469 | - | 2562 | WP_063079327.1 | phage tail tape measure protein | - |
| CV83915_RS02270 () | 3462..3896 | - | 435 | WP_021544911.1 | phage tail assembly protein T | - |
| CV83915_RS02275 () | 3878..4300 | - | 423 | WP_063079325.1 | phage minor tail protein G | - |
| CV83915_RS02280 () | 4316..5056 | - | 741 | WP_063079328.1 | phage tail protein | - |
| CV83915_RS02285 () | 5064..5459 | - | 396 | WP_063079324.1 | phage minor tail U family protein | - |
| CV83915_RS02290 () | 5456..6034 | - | 579 | WP_033549010.1 | phage tail protein | - |
| CV83915_RS02295 () | 6046..6399 | - | 354 | WP_021531813.1 | head-tail joining protein | - |
| CV83915_RS02300 () | 6411..6809 | - | 399 | WP_000158862.1 | DNA-packaging protein FI | - |
| CV83915_RS02305 () | 6851..7876 | - | 1026 | WP_033549012.1 | major capsid protein | - |
| CV83915_RS02310 () | 7932..8264 | - | 333 | WP_001299443.1 | head decoration protein | - |
| CV83915_RS02315 () | 8274..9593 | - | 1320 | WP_103758520.1 | S49 family peptidase | - |
| CV83915_RS02320 () | 9574..11175 | - | 1602 | WP_001345555.1 | phage portal protein | - |
| CV83915_RS02325 () | 11172..11378 | - | 207 | WP_000198149.1 | gpW family protein | - |
| CV83915_RS02330 () | 11375..13300 | - | 1926 | WP_033549014.1 | phage terminase large subunit family protein | - |
| CV83915_RS02335 () | 13275..13820 | - | 546 | WP_016230698.1 | terminase small subunit | - |
| CV83915_RS02340 () | 14215..14400 | + | 186 | WP_001329960.1 | YlcI/YnfO family protein | - |
| CV83915_RS02345 () | 14533..14673 | - | 141 | WP_000347013.1 | hypothetical protein | - |
| CV83915_RS29020 () | 15086..15271 | - | 186 | WP_071587457.1 | Rz1 family lipoprotein | - |
| CV83915_RS29025 () | 15494..15625 | - | 132 | WP_001280932.1 | hypothetical protein | - |
| CV83915_RS02355 () | 15640..15822 | - | 183 | WP_001151823.1 | hypothetical protein | - |
| CV83915_RS02365 () | 15979..16512 | - | 534 | WP_000992072.1 | lysozyme | - |
| CV83915_RS02370 () | 16618..16890 | + | 273 | WP_074150484.1 | hypothetical protein | - |
| CV83915_RS02375 () | 16856..17200 | - | 345 | WP_000193278.1 | YdfR family protein | - |
| CV83915_RS02380 () | 17205..17420 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| CV83915_RS02395 () | 18219..18761 | - | 543 | WP_000640107.1 | DUF1133 family protein | - |
| CV83915_RS02400 () | 18758..19048 | - | 291 | WP_021552286.1 | DUF1364 domain-containing protein | - |
| CV83915_RS02405 () | 19048..19647 | - | 600 | WP_000940314.1 | DUF1367 family protein | - |
| CV83915_RS02410 () | 20326..21147 | + | 822 | Protein_29 | hypothetical protein | - |
| CV83915_RS02415 () | 21221..22201 | + | 981 | WP_021539078.1 | IS5-like element ISKpn26 family transposase | - |
| CV83915_RS02420 () | 22818..23975 | + | 1158 | WP_074150500.1 | hypothetical protein | - |
| CV83915_RS02425 () | 24075..24479 | - | 405 | WP_063104638.1 | DUF977 family protein | - |
| CV83915_RS02430 () | 24495..25256 | - | 762 | WP_000450662.1 | DUF1627 domain-containing protein | - |
| CV83915_RS02435 () | 25279..26025 | - | 747 | WP_000788970.1 | ATP-binding protein | - |
| CV83915_RS02440 () | 26032..26889 | - | 858 | WP_000899746.1 | DUF1376 domain-containing protein | - |
| CV83915_RS02445 () | 26902..27159 | - | 258 | Protein_36 | toxin YdaT domain-containing protein | - |
| CV83915_RS02455 () | 28443..28637 | - | 195 | WP_074150452.1 | hypothetical protein | - |
| CV83915_RS02460 () | 28660..28956 | - | 297 | WP_000712069.1 | toxin YdaS | - |
| CV83915_RS02465 () | 29080..29556 | + | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| CV83915_RS02475 () | 30010..30165 | + | 156 | WP_001169151.1 | YdaF family protein | - |
| CV83915_RS02480 () | 30162..30650 | - | 489 | WP_010377803.1 | superinfection exclusion B family protein | - |
| CV83915_RS02490 () | 31092..31313 | + | 222 | WP_000560223.1 | killing protein KilR | - |
| CV83915_RS02495 () | 31313..31483 | + | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| CV83915_RS02500 () | 31558..31833 | + | 276 | WP_000632297.1 | protein RacC | - |
| CV83915_RS02505 () | 31935..34535 | + | 2601 | WP_048230494.1 | exodeoxyribonuclease VIII | - |
| CV83915_RS02510 () | 34528..35337 | + | 810 | WP_000166319.1 | recombination protein RecT | - |
| CV83915_RS02515 () | 35394..35588 | + | 195 | WP_050491434.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| CV83915_RS02520 () | 35581..35791 | + | 211 | Protein_49 | double-strand break reduction protein RcbA | - |
| - () | 35587..35766 | - | 180 | NuclAT_1 | - | Antitoxin Detail |
| - () | 35587..35766 | - | 180 | NuclAT_1 | - | Antitoxin Detail |
| - () | 35587..35766 | - | 180 | NuclAT_1 | - | Antitoxin Detail |
| - () | 35587..35766 | - | 180 | NuclAT_1 | - | Antitoxin Detail |
| CV83915_RS02525 () | 35870..36085 | + | 216 | WP_000079604.1 | excisionase XisR | - |
| CV83915_RS02530 () | 36087..37322 | + | 1236 | WP_000040852.1 | site-specific integrase | - |
| CV83915_RS02535 () | 37374..38309 | + | 936 | WP_001157407.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| CV83915_RS02540 () | 38438..39811 | - | 1374 | WP_016244573.1 | ATP-dependent RNA helicase DbpA | - |
| CV83915_RS02550 () | 40289..41272 | - | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| CV83915_RS29580 () | 41286..41333 | - | 48 | WP_211180494.1 | protein YnaN | - |
| CV83915_RS02555 () | 41527..42759 | + | 1233 | WP_000628065.1 | diguanylate cyclase DgcM | - |
| CV83915_RS02560 () | 42780..43343 | - | 564 | WP_001046821.1 | DNA endonuclease SmrA | - |
| CV83915_RS02565 () | 43538..44146 | - | 609 | Protein_58 | MFS transporter | - |
| CV83915_RS02570 () | 44164..44861 | - | 698 | Protein_59 | IS1-like element IS1A family transposase | - |
| CV83915_RS02580 () | 44918..45829 | - | 912 | Protein_60 | DHA2 family efflux MFS transporter permease subunit | - |
| CV83915_RS02585 () | 45826..46853 | - | 1028 | Protein_61 | HlyD family secretion protein | - |
| CV83915_RS02590 () | 46950..47765 | + | 816 | WP_063079697.1 | helix-turn-helix transcriptional regulator | - |
| CV83915_RS02600 () | 48154..48297 | + | 144 | Protein_63 | AbgT family transporter | - |
| CV83915_RS02605 () | 48308..48823 | + | 516 | WP_000945005.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| CV83915_RS02610 () | 49018..49770 | + | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|