MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 107841 bp
Accession: NZ_CP024956 Location: 857268..965108 Organism: Pectobacterium atrosepticum strain 36A Replicon: chromosome
Accession: NZ_CP024956 Location: 857268..965108 Organism: Pectobacterium atrosepticum strain 36A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CVS35_RS04010 () | 853825..854046 | + | 222 | WP_010285252.1 | Flp family type IVb pilin | - |
| CVS35_RS04015 () | 854054..854605 | + | 552 | WP_039290057.1 | prepilin peptidase | - |
| CVS35_RS04020 () | 854654..855607 | + | 954 | WP_039290060.1 | Flp pilus assembly protein CpaB | - |
| CVS35_RS04025 () | 855688..857124 | + | 1437 | WP_011092396.1 | type II and III secretion system protein family protein | - |
| CVS35_RS04030 () | 857146..857832 | + | 687 | WP_011092397.1 | CpaD family pilus assembly protein | - |
| CVS35_RS04035 () | 857847..859046 | + | 1200 | WP_011092398.1 | hypothetical protein | - |
| CVS35_RS04040 () | 859086..860489 | + | 1404 | WP_011092399.1 | Putative conjugal transfer protein | VF |
| CVS35_RS04045 () | 860508..861488 | + | 981 | WP_011092400.1 | hypothetical protein | VF |
| CVS35_RS04050 () | 861503..862462 | + | 960 | WP_039290065.1 | hypothetical protein | VF |
| CVS35_RS04055 () | 862563..863414 | + | 852 | WP_011092402.1 | tetratricopeptide repeat protein | - |
| CVS35_RS04060 () | 863414..863974 | + | 561 | WP_039290066.1 | hypothetical protein | - |
| CVS35_RS04065 () | 863967..864599 | + | 633 | WP_039290067.1 | hypothetical protein | - |
| CVS35_RS04070 () | 864779..866410 | + | 1632 | WP_100675187.1 | Tad domain-containing protein | - |
| CVS35_RS04075 () | 866469..876164 | + | 9696 | WP_039290069.1 | beta-propeller fold lactonase family protein | - |
| CVS35_RS04080 () | 876419..878185 | + | 1767 | WP_039297572.1 | TolC family protein | - |
| CVS35_RS04085 () | 878185..878943 | + | 759 | WP_039297575.1 | efflux RND transporter periplasmic adaptor subunit | - |
| CVS35_RS04090 () | 878940..880298 | + | 1359 | WP_039297577.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| CVS35_RS04095 () | 880301..882430 | + | 2130 | WP_039297580.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| CVS35_RS04100 () | 882758..884494 | + | 1737 | WP_039297583.1 | rhamnogalacturonate lyase | - |
| CVS35_RS04105 () | 884623..885531 | - | 909 | WP_039297586.1 | Recombination-promoting nuclease RpnA | VF |
| CVS35_RS04110 () | 885786..887444 | - | 1659 | WP_011092413.1 | cation/acetate symporter ActP | - |
| CVS35_RS04115 () | 887441..887752 | - | 312 | WP_011092414.1 | DUF485 domain-containing protein | - |
| CVS35_RS04120 () | 887878..889839 | - | 1962 | WP_100675188.1 | acetate--CoA ligase | - |
| CVS35_RS04125 () | 890742..891134 | + | 393 | WP_011092415.1 | hypothetical protein | - |
| CVS35_RS04130 () | 891885..894254 | + | 2370 | WP_039297431.1 | TonB-dependent siderophore receptor | - |
| CVS35_RS04140 () | 894419..894943 | + | 525 | WP_039297437.1 | sigma-70 family RNA polymerase sigma factor | - |
| CVS35_RS04145 () | 894940..895887 | + | 948 | WP_039297440.1 | DUF4880 domain-containing protein | - |
| CVS35_RS04150 () | 896070..897080 | + | 1011 | WP_039297443.1 | AI-2E family transporter | - |
| CVS35_RS04155 () | 897232..897849 | + | 618 | WP_039297446.1 | hypothetical protein | - |
| CVS35_RS04160 () | 897924..899450 | - | 1527 | WP_011092422.1 | MFS transporter | - |
| CVS35_RS04165 () | 899833..900207 | + | 375 | WP_039297450.1 | hypothetical protein | - |
| CVS35_RS04170 () | 900200..901687 | - | 1488 | WP_039297452.1 | fructuronate reductase | - |
| CVS35_RS04175 () | 902009..903289 | + | 1281 | WP_039290114.1 | L-methionine gamma-lyase | VF |
| CVS35_RS04180 () | 903352..904443 | - | 1092 | WP_039290116.1 | putative L,D-transpeptidase YbiS | VF |
| CVS35_RS04185 () | 904625..905422 | - | 798 | WP_039290119.1 | deaminated glutathione amidase | - |
| CVS35_RS04190 () | 905444..905980 | - | 537 | WP_011092428.1 | cytochrome b561 | - |
| CVS35_RS04195 () | 906254..909787 | - | 3534 | WP_039290122.1 | pyruvate:ferredoxin (flavodoxin) oxidoreductase | - |
| CVS35_RS04200 () | 910177..910602 | + | 426 | WP_011092430.1 | hypothetical protein | - |
| CVS35_RS04210 () | 910962..911459 | + | 498 | WP_039290125.1 | GNAT family N-acetyltransferase | - |
| CVS35_RS04215 () | 911503..912129 | - | 627 | WP_011092432.1 | LysE family transporter | - |
| CVS35_RS04220 () | 912326..913108 | - | 783 | WP_011092433.1 | ABC transporter substrate-binding protein | - |
| CVS35_RS04230 () | 914732..915193 | - | 462 | Protein_795 | hypothetical protein | - |
| CVS35_RS04235 () | 916048..916680 | - | 633 | WP_158296417.1 | transglycosylase domain-containing protein | - |
| CVS35_RS22540 () | 916617..917237 | - | 621 | WP_158296418.1 | hypothetical protein | - |
| CVS35_RS04240 () | 917540..917919 | - | 380 | Protein_798 | winged helix-turn-helix domain-containing protein | - |
| CVS35_RS04245 () | 918341..918886 | + | 546 | WP_039282029.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | - |
| CVS35_RS04250 () | 918870..919070 | + | 201 | Protein_800 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| CVS35_RS04255 () | 919398..919682 | - | 285 | WP_039290137.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| CVS35_RS04260 () | 919672..919923 | - | 252 | WP_005973616.1 | prevent-host-death protein | Antitoxin Detail |
| CVS35_RS04265 () | 920183..922510 | - | 2328 | WP_039290139.1 | toprim domain-containing protein | - |
| CVS35_RS04270 () | 922521..922862 | - | 342 | WP_039290142.1 | DUF5375 family protein | - |
| CVS35_RS04275 () | 922859..923125 | - | 267 | WP_039290145.1 | hypothetical protein | - |
| CVS35_RS04280 () | 923122..923316 | - | 195 | WP_039294697.1 | hypothetical protein | - |
| CVS35_RS22545 () | 923309..923506 | - | 198 | WP_039294701.1 | host cell division inhibitor Icd-like protein | - |
| CVS35_RS04285 () | 923485..923853 | - | 369 | Protein_808 | ash family protein | - |
| CVS35_RS04290 () | 923862..924086 | - | 225 | WP_039281995.1 | hypothetical protein | - |
| CVS35_RS04295 () | 924083..924343 | - | 261 | WP_039290147.1 | AlpA family transcriptional regulator | - |
| CVS35_RS04300 () | 924890..925651 | + | 762 | WP_039290148.1 | hypothetical protein | - |
| CVS35_RS04305 () | 925648..925896 | + | 249 | WP_071598516.1 | ogr/Delta-like zinc finger family protein | - |
| CVS35_RS04315 () | 926290..927678 | + | 1389 | WP_039297459.1 | hypothetical protein | - |
| CVS35_RS04320 () | 927752..928939 | - | 1188 | WP_039297461.1 | Prophage integrase IntA ; Integrase | Integrase |
| CVS35_RS04325 () | 929682..929885 | + | 204 | WP_039290153.1 | AlpA family transcriptional regulator | - |
| CVS35_RS04330 () | 930804..931181 | - | 378 | WP_039290156.1 | hypothetical protein | - |
| CVS35_RS04335 () | 931218..931712 | - | 495 | WP_039290165.1 | DUF4755 domain-containing protein | - |
| CVS35_RS04340 () | 932075..933376 | - | 1302 | WP_051122315.1 | MobA/MobL family protein | - |
| CVS35_RS04345 () | 933717..933902 | + | 186 | WP_023214638.1 | hypothetical protein | - |
| CVS35_RS04350 () | 933899..934234 | + | 336 | WP_039290170.1 | hypothetical protein | - |
| CVS35_RS04355 () | 934224..934574 | + | 351 | WP_039290172.1 | hypothetical protein | - |
| CVS35_RS04360 () | 934567..934977 | + | 411 | WP_039290174.1 | hypothetical protein | - |
| CVS35_RS04365 () | 934974..935210 | + | 237 | WP_001528703.1 | hypothetical protein | - |
| CVS35_RS04370 () | 935212..935676 | + | 465 | WP_039290178.1 | hypothetical protein | - |
| CVS35_RS04375 () | 935878..937623 | - | 1746 | WP_039290181.1 | hypothetical protein | - |
| CVS35_RS04380 () | 937700..938929 | - | 1230 | WP_039290184.1 | Prophage integrase IntA ; Integrase | Integrase |
| CVS35_RS04390 () | 939507..939989 | - | 483 | WP_011092441.1 | SsrA-binding protein SmpB | - |
| CVS35_RS04395 () | 940145..940591 | + | 447 | WP_039290192.1 | type II toxin-antitoxin system RatA family toxin | - |
| CVS35_RS04400 () | 940572..940862 | + | 291 | WP_039290195.1 | RnfH family protein | - |
| CVS35_RS04405 () | 941100..941435 | - | 336 | WP_011092444.1 | outer membrane protein assembly factor BamE | - |
| CVS35_RS04410 () | 941590..943251 | - | 1662 | WP_039297464.1 | DNA repair protein RecN | VF |
| CVS35_RS04415 () | 943331..944209 | - | 879 | WP_011092446.1 | NAD(+) kinase | - |
| CVS35_RS04420 () | 944358..944945 | + | 588 | WP_039290202.1 | nucleotide exchange factor GrpE | - |
| CVS35_RS04425 () | 945382..946614 | + | 1233 | WP_011092448.1 | Nramp family divalent metal transporter | - |
| CVS35_RS04430 () | 946646..946849 | - | 204 | WP_010282462.1 | 4-oxalocrotonate tautomerase family protein | - |
| CVS35_RS04435 () | 946863..948029 | - | 1167 | WP_011092449.1 | MFS transporter | - |
| CVS35_RS04440 () | 948228..949325 | - | 1098 | WP_011092450.1 | glycerol dehydrogenase | - |
| CVS35_RS04445 () | 949703..950284 | + | 582 | WP_011092451.1 | GDP-mannose pyrophosphatase NudK | - |
| CVS35_RS04450 () | 950679..951944 | + | 1266 | WP_039290211.1 | extracellular solute-binding protein | - |
| CVS35_RS04455 () | 952008..952889 | + | 882 | WP_039290214.1 | sugar ABC transporter permease | - |
| CVS35_RS04460 () | 952891..953703 | + | 813 | WP_039290217.1 | carbohydrate ABC transporter permease | - |
| CVS35_RS04465 () | 953740..954825 | + | 1086 | WP_039290221.1 | Maltose/maltodextrin import ATP-binding protein MalK | VF |
| CVS35_RS04470 () | 955174..956697 | + | 1524 | WP_039290224.1 | glycosyl hydrolase 53 family protein | - |
| CVS35_RS04475 () | 956816..957847 | - | 1032 | WP_011092457.1 | LacI family DNA-binding transcriptional regulator | - |
| CVS35_RS04480 () | 957984..958745 | - | 762 | WP_039290228.1 | Arginine transport ATP-binding protein ArtM | VF |
| CVS35_RS04485 () | 958820..959764 | - | 945 | WP_039290231.1 | amino acid ABC transporter permease | - |
| CVS35_RS04490 () | 959761..960657 | - | 897 | WP_039290234.1 | ABC transporter substrate-binding protein | - |
| CVS35_RS04495 () | 961069..961917 | - | 849 | WP_080641362.1 | PRD domain-containing protein | - |
| CVS35_RS04500 () | 962066..963493 | - | 1428 | WP_039290236.1 | glycoside hydrolase family 1 protein | - |
| CVS35_RS04505 () | 963559..965478 | - | 1920 | WP_039294713.1 | beta-glucoside-specific PTS transporter subunit IIABC | - |
| CVS35_RS04515 () | 965795..967789 | - | 1995 | WP_048018344.1 | transketolase | - |
| CVS35_RS04520 () | 967805..968755 | - | 951 | WP_011092465.1 | transaldolase | - |
| CVS35_RS04525 () | 968954..969412 | - | 459 | WP_039290245.1 | ribose 5-phosphate isomerase B | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|