MGE detailed information
MGE type: Prophage MGE length: 50428 bp
Accession: NZ_CP024862 Location: 4889037..4939464 Organism: Escherichia coli strain AR_0015 Replicon: chromosome
Accession: NZ_CP024862 Location: 4889037..4939464 Organism: Escherichia coli strain AR_0015 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM342_RS25115 () | 4884533..4884832 | - | 300 | Protein_4563 | sensor domain-containing diguanylate cyclase | - |
| AM342_RS28820 () | 4885026..4885073 | + | 48 | WP_211180494.1 | protein YnaN | - |
| AM342_RS25120 () | 4885087..4886070 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| AM342_RS25130 () | 4886548..4887921 | + | 1374 | WP_000123748.1 | ATP-dependent RNA helicase DbpA | - |
| AM342_RS25135 () | 4888050..4888985 | - | 936 | WP_001523172.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| AM342_RS25140 () | 4889037..4890272 | - | 1236 | WP_000040839.1 | Putative defective protein IntQ ; Integrase | Integrase |
| AM342_RS25145 () | 4890274..4890489 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| AM342_RS25150 () | 4890589..4890777 | - | 189 | WP_001302840.1 | DUF1187 family protein | - |
| - () | 4890593..4890771 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4890593..4890771 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4890593..4890771 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - () | 4890593..4890771 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| AM342_RS25155 () | 4890815..4890964 | - | 150 | WP_001443846.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| AM342_RS25160 () | 4891020..4891829 | - | 810 | WP_000166313.1 | recombination protein RecT | - |
| AM342_RS25165 () | 4891822..4894422 | - | 2601 | WP_000105140.1 | exodeoxyribonuclease VIII | - |
| AM342_RS25170 () | 4894524..4894799 | - | 276 | WP_001344816.1 | hypothetical protein | - |
| AM342_RS25175 () | 4894874..4895044 | - | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| AM342_RS25180 () | 4895044..4895265 | - | 222 | WP_000560223.1 | killing protein KilR | - |
| AM342_RS25190 () | 4895707..4896195 | + | 489 | WP_001312793.1 | superinfection exclusion protein B | - |
| AM342_RS25195 () | 4896192..4896347 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| AM342_RS25200 () | 4896358..4896537 | - | 180 | WP_001326317.1 | hypothetical protein | - |
| AM342_RS25210 () | 4896780..4897199 | - | 420 | WP_000233319.1 | helix-turn-helix domain-containing protein | - |
| AM342_RS25215 () | 4897279..4897533 | + | 255 | WP_001072342.1 | hypothetical protein | - |
| AM342_RS25220 () | 4897530..4897952 | + | 423 | WP_000693803.1 | hypothetical protein | - |
| AM342_RS25225 () | 4898030..4898818 | + | 789 | WP_001396581.1 | hypothetical protein | - |
| AM342_RS25230 () | 4898825..4899571 | + | 747 | WP_020233967.1 | ATP-binding protein | - |
| AM342_RS25235 () | 4899594..4900355 | + | 762 | WP_000450716.1 | DUF1627 domain-containing protein | - |
| AM342_RS25240 () | 4900371..4900793 | + | 423 | WP_029702111.1 | DUF977 family protein | - |
| AM342_RS28460 () | 4900955..4901458 | + | 504 | WP_000137958.1 | hypothetical protein | - |
| AM342_RS25255 () | 4901579..4902352 | - | 774 | WP_000200358.1 | KilA-N domain-containing protein | - |
| AM342_RS25260 () | 4902875..4903000 | + | 126 | WP_001445775.1 | type I toxin-antitoxin system Hok family toxin | - |
| AM342_RS25265 () | 4903083..4903424 | - | 342 | WP_001445776.1 | DUF1971 domain-containing protein | - |
| AM342_RS25270 () | 4904292..4904891 | + | 600 | WP_000940344.1 | DUF1367 family protein | - |
| AM342_RS25275 () | 4904891..4905181 | + | 291 | WP_000228032.1 | DUF1364 domain-containing protein | - |
| AM342_RS25280 () | 4905178..4905720 | + | 543 | WP_000640106.1 | DUF1133 family protein | - |
| AM342_RS25285 () | 4905942..4906511 | + | 570 | WP_001208722.1 | hypothetical protein | - |
| AM342_RS25290 () | 4906480..4906782 | - | 303 | WP_001328752.1 | hypothetical protein | - |
| AM342_RS25295 () | 4906859..4907200 | + | 342 | WP_000781775.1 | phage holin, lambda family | - |
| AM342_RS25300 () | 4907204..4907680 | + | 477 | WP_023153991.1 | glycoside hydrolase family protein | - |
| AM342_RS25305 () | 4907897..4908082 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| AM342_RS25310 () | 4908279..4909736 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| AM342_RS25320 () | 4909874..4910665 | + | 792 | WP_001291105.1 | ParB/Srx family N-terminal domain-containing protein | - |
| AM342_RS25325 () | 4910658..4911590 | + | 933 | WP_020233805.1 | hypothetical protein | - |
| AM342_RS25330 () | 4911526..4911777 | + | 252 | WP_000613571.1 | hypothetical protein | - |
| AM342_RS25335 () | 4911781..4912875 | + | 1095 | WP_000089448.1 | terminase small subunit | - |
| AM342_RS25340 () | 4912856..4914157 | + | 1302 | WP_000625348.1 | terminase family protein | - |
| AM342_RS25345 () | 4914160..4915566 | + | 1407 | WP_000763701.1 | DUF4055 domain-containing protein | - |
| AM342_RS25350 () | 4915550..4916662 | + | 1113 | WP_001363932.1 | hypothetical protein | - |
| AM342_RS25355 () | 4916767..4917531 | + | 765 | WP_029702112.1 | hypothetical protein | - |
| AM342_RS25360 () | 4917630..4918769 | + | 1140 | WP_020233804.1 | hypothetical protein | - |
| AM342_RS28635 () | 4918812..4918988 | + | 177 | WP_000908084.1 | hypothetical protein | - |
| AM342_RS25370 () | 4918992..4919387 | + | 396 | WP_000634214.1 | hypothetical protein | - |
| AM342_RS25375 () | 4919387..4919770 | + | 384 | WP_000524260.1 | hypothetical protein | - |
| AM342_RS25380 () | 4919771..4920151 | + | 381 | WP_001029815.1 | hypothetical protein | - |
| AM342_RS25385 () | 4920148..4920540 | + | 393 | WP_000673077.1 | hypothetical protein | - |
| AM342_RS25390 () | 4920567..4921529 | + | 963 | WP_001328756.1 | hypothetical protein | - |
| AM342_RS25395 () | 4921680..4922039 | + | 360 | WP_122452218.1 | hypothetical protein | - |
| AM342_RS25400 () | 4922147..4922347 | + | 201 | WP_032139919.1 | hypothetical protein | - |
| AM342_RS25405 () | 4922511..4925744 | + | 3234 | WP_023153989.1 | phage tail tape measure protein | - |
| AM342_RS25410 () | 4925737..4926075 | + | 339 | WP_000024051.1 | phage tail protein | - |
| AM342_RS25415 () | 4926075..4926773 | + | 699 | WP_001152432.1 | phage minor tail protein L | - |
| AM342_RS25420 () | 4926779..4927522 | + | 744 | WP_001351716.1 | C40 family peptidase | - |
| AM342_RS25425 () | 4927459..4928060 | + | 602 | Protein_4621 | tail assembly protein | - |
| AM342_RS25430 () | 4928121..4931600 | + | 3480 | WP_021523093.1 | host specificity protein J | - |
| AM342_RS25435 () | 4931668..4932267 | + | 600 | WP_001542091.1 | Outer membrane protein X | VF |
| AM342_RS25440 () | 4932332..4934731 | + | 2400 | WP_032152843.1 | prophage tail fiber N-terminal domain-containing protein | - |
| AM342_RS25445 () | 4934728..4935009 | + | 282 | WP_000654154.1 | hypothetical protein | - |
| AM342_RS25450 () | 4935019..4935723 | + | 705 | WP_000235967.1 | tail fiber domain-containing protein | - |
| AM342_RS25455 () | 4935734..4936027 | + | 294 | WP_000355609.1 | hypothetical protein | - |
| AM342_RS25460 () | 4936047..4936156 | + | 110 | Protein_4628 | tail fiber assembly protein | - |
| AM342_RS25465 () | 4936254..4936845 | - | 592 | Protein_4629 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| AM342_RS25470 () | 4937162..4937395 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| AM342_RS28465 () | 4937464..4937577 | - | 114 | WP_120795384.1 | hypothetical protein | - |
| AM342_RS25475 () | 4938181..4939464 | + | 1284 | Protein_4632 | MHS family MFS transporter YdfJ | - |
| AM342_RS25480 () | 4939553..4941013 | + | 1461 | WP_000527786.1 | mannitol dehydrogenase family protein | - |
| AM342_RS25485 () | 4941049..4941252 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| AM342_RS25490 () | 4941430..4942116 | - | 687 | WP_000215553.1 | DNA-binding transcriptional regulator YdfH | - |
| AM342_RS25495 () | 4942205..4942951 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|