MGE detailed information
MGE type: Prophage MGE length: 77345 bp
Accession: NZ_CP024672 Location: 2090034..2167378 Organism: Citrobacter freundii strain HM38 Replicon: chromosome
Accession: NZ_CP024672 Location: 2090034..2167378 Organism: Citrobacter freundii strain HM38 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUC52_RS10135 () | 2085742..2086200 | + | 459 | WP_003021010.1 | DUF986 family protein | - |
| CUC52_RS10145 () | 2086633..2087199 | + | 567 | WP_003021013.1 | manganese efflux pump MntP | - |
| CUC52_RS10150 () | 2087196..2088005 | - | 810 | WP_003841628.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| CUC52_RS10155 () | 2088069..2089814 | - | 1746 | WP_003021017.1 | peptidoglycan glycosyltransferase FtsI | - |
| CUC52_RS10160 () | 2090034..2090243 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| CUC52_RS10165 () | 2090256..2090399 | - | 144 | WP_003034983.1 | YobF family protein | - |
| CUC52_RS10170 () | 2091036..2091320 | - | 285 | WP_003841991.1 | YebO family protein | - |
| CUC52_RS10175 () | 2091395..2091538 | - | 144 | WP_003034977.1 | PhoP/PhoQ regulator MgrB | - |
| CUC52_RS10180 () | 2091703..2091942 | + | 240 | WP_003841988.1 | hypothetical protein | - |
| CUC52_RS10185 () | 2092057..2092848 | - | 792 | WP_003833778.1 | DNA-binding transcriptional regulator KdgR | - |
| CUC52_RS10190 () | 2093023..2094396 | + | 1374 | WP_048232221.1 | MFS transporter | - |
| CUC52_RS10195 () | 2094443..2095324 | - | 882 | WP_003034964.1 | protease HtpX | - |
| CUC52_RS10200 () | 2095517..2097565 | - | 2049 | WP_003034960.1 | carboxy terminal-processing peptidase | - |
| CUC52_RS10205 () | 2097585..2098271 | - | 687 | WP_003034957.1 | RNA chaperone ProQ | - |
| CUC52_RS10210 () | 2098368..2098865 | - | 498 | WP_003034953.1 | GAF domain-containing protein | - |
| CUC52_RS10215 () | 2098994..2100277 | + | 1284 | WP_003841983.1 | membrane integrity lipid transport subunit YebS | - |
| CUC52_RS10220 () | 2100246..2102879 | + | 2634 | WP_003034947.1 | hypothetical protein | VF |
| CUC52_RS10225 () | 2102992..2104380 | + | 1389 | WP_060854927.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CUC52_RS10230 () | 2104481..2104717 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| CUC52_RS10235 () | 2104820..2105011 | + | 192 | WP_003841978.1 | YebW family protein | - |
| CUC52_RS10240 () | 2105012..2105653 | - | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| CUC52_RS24230 () | 2106006..2106113 | + | 108 | Protein_1958 | DinI-like family protein | - |
| CUC52_RS10250 () | 2106401..2106910 | + | 510 | WP_081092925.1 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | VF |
| CUC52_RS10255 () | 2107090..2107581 | - | 492 | WP_121528472.1 | tail fiber domain-containing protein | - |
| CUC52_RS10260 () | 2107765..2108181 | - | 417 | Protein_1961 | phage tail protein | - |
| CUC52_RS10265 () | 2108191..2109135 | - | 945 | WP_060855148.1 | hypothetical protein | - |
| CUC52_RS10270 () | 2109135..2111855 | - | 2721 | WP_060855147.1 | DUF1983 domain-containing protein | - |
| CUC52_RS10275 () | 2111855..2112253 | - | 399 | WP_060855146.1 | hypothetical protein | - |
| CUC52_RS10280 () | 2112260..2112844 | - | 585 | WP_060855145.1 | hypothetical protein | - |
| CUC52_RS10285 () | 2112844..2113437 | - | 594 | WP_060855144.1 | hypothetical protein | - |
| CUC52_RS24235 () | 2113782..2113958 | - | 177 | WP_155643922.1 | hypothetical protein | - |
| CUC52_RS10295 () | 2114000..2116474 | - | 2475 | WP_060855142.1 | phage tail tape measure protein | - |
| CUC52_RS10300 () | 2116530..2116817 | - | 288 | WP_046671179.1 | hypothetical protein | - |
| CUC52_RS24325 () | 2116885..2117061 | - | 177 | WP_196491839.1 | hypothetical protein | - |
| CUC52_RS10310 () | 2117172..2117552 | - | 381 | WP_060855141.1 | phage tail assembly chaperone family protein, TAC | - |
| CUC52_RS10315 () | 2117605..2118096 | - | 492 | WP_046671182.1 | phage major tail protein | - |
| CUC52_RS10320 () | 2118155..2118520 | - | 366 | WP_060855140.1 | DUF3168 domain-containing protein | - |
| CUC52_RS10325 () | 2118517..2119056 | - | 540 | WP_060855139.1 | HK97 gp10 family phage protein | - |
| CUC52_RS10330 () | 2119049..2119381 | - | 333 | WP_060855138.1 | phage head closure protein | - |
| CUC52_RS10335 () | 2119383..2119616 | - | 234 | WP_060855137.1 | hypothetical protein | - |
| CUC52_RS10340 () | 2119686..2120003 | - | 318 | WP_060855136.1 | head-tail connector protein | - |
| CUC52_RS10345 () | 2120081..2121319 | - | 1239 | WP_060855135.1 | phage major capsid protein | - |
| CUC52_RS10350 () | 2121329..2121928 | - | 600 | WP_060855134.1 | HK97 family phage prohead protease | - |
| CUC52_RS10355 () | 2121921..2123147 | - | 1227 | WP_060855133.1 | phage portal protein | - |
| CUC52_RS10360 () | 2123295..2125052 | - | 1758 | WP_060855132.1 | terminase large subunit | - |
| CUC52_RS10365 () | 2125052..2125549 | - | 498 | WP_003841734.1 | phage terminase small subunit P27 family | - |
| CUC52_RS10370 () | 2125706..2126056 | - | 351 | WP_072271950.1 | HNH endonuclease | - |
| CUC52_RS24240 () | 2126044..2126259 | - | 216 | WP_060855130.1 | hypothetical protein | - |
| CUC52_RS10380 () | 2126426..2126821 | - | 396 | WP_060855129.1 | hypothetical protein | - |
| CUC52_RS10385 () | 2126952..2127152 | - | 201 | WP_072271949.1 | hypothetical protein | - |
| CUC52_RS10390 () | 2127109..2127378 | - | 270 | WP_060855128.1 | hypothetical protein | - |
| CUC52_RS10395 () | 2127386..2128000 | - | 615 | WP_060855127.1 | glycoside hydrolase family 19 protein | - |
| CUC52_RS10400 () | 2128156..2128437 | - | 282 | WP_072271948.1 | phage holin family protein | - |
| CUC52_RS10405 () | 2128424..2128810 | - | 387 | WP_060855126.1 | phage holin family protein | - |
| CUC52_RS10410 () | 2128900..2129088 | - | 189 | WP_060855125.1 | hypothetical protein | - |
| CUC52_RS10415 () | 2129311..2129817 | - | 507 | WP_060855124.1 | hypothetical protein | - |
| CUC52_RS10420 () | 2129829..2130125 | - | 297 | WP_060855123.1 | hypothetical protein | - |
| CUC52_RS10425 () | 2130338..2131168 | - | 831 | WP_060855122.1 | antitermination protein | - |
| CUC52_RS10430 () | 2131186..2132226 | - | 1041 | WP_060855121.1 | DUF968 domain-containing protein | - |
| CUC52_RS10435 () | 2132223..2132582 | - | 360 | WP_060855120.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CUC52_RS10440 () | 2132585..2132785 | - | 201 | WP_060855119.1 | hypothetical protein | - |
| CUC52_RS10445 () | 2132915..2133160 | - | 246 | WP_060855118.1 | hypothetical protein | - |
| CUC52_RS10450 () | 2133206..2133439 | - | 234 | WP_060855117.1 | DinI-like family protein | - |
| CUC52_RS10455 () | 2133930..2134493 | + | 564 | WP_170973743.1 | hypothetical protein | - |
| CUC52_RS10465 () | 2135194..2135574 | + | 381 | WP_060855115.1 | hypothetical protein | - |
| CUC52_RS10475 () | 2135818..2135931 | - | 114 | WP_053271637.1 | 3'-5' exoribonuclease | - |
| CUC52_RS10480 () | 2136085..2136546 | - | 462 | Protein_2003 | DUF550 domain-containing protein | - |
| CUC52_RS10495 () | 2136946..2137284 | - | 339 | WP_060855152.1 | DUF977 family protein | - |
| CUC52_RS10500 () | 2137290..2137706 | - | 417 | WP_016150448.1 | PerC family transcriptional regulator | - |
| CUC52_RS10505 () | 2137722..2138393 | - | 672 | WP_072271946.1 | replication protein | - |
| CUC52_RS10515 () | 2139343..2139897 | - | 555 | WP_060855150.1 | hypothetical protein | - |
| CUC52_RS10520 () | 2139901..2140113 | - | 213 | WP_003832309.1 | helix-turn-helix transcriptional regulator | - |
| CUC52_RS10525 () | 2140219..2140599 | + | 381 | WP_003832307.1 | helix-turn-helix domain-containing protein | - |
| CUC52_RS24330 () | 2140818..2141030 | + | 213 | WP_153070801.1 | hypothetical protein | - |
| CUC52_RS10530 () | 2141092..2141418 | + | 327 | WP_060855149.1 | Rrf2 family transcriptional regulator | - |
| CUC52_RS10535 () | 2141560..2144031 | + | 2472 | WP_060855113.1 | exonuclease | - |
| CUC52_RS10540 () | 2144095..2144355 | + | 261 | WP_072211989.1 | hypothetical protein | - |
| CUC52_RS10545 () | 2144333..2145412 | + | 1080 | WP_016150458.1 | hypothetical protein ; Integrase | Integrase |
| - () | 2145542..2145683 | + | 142 | - | - | Antitoxin Detail |
| - () | 2145545..2145648 | - | 104 | - | - | Toxin Detail |
| CUC52_RS10550 () | 2145804..2146142 | - | 339 | WP_060855112.1 | YebY family protein | - |
| CUC52_RS10555 () | 2146163..2147035 | - | 873 | WP_060855111.1 | copper homeostasis membrane protein CopD | - |
| CUC52_RS10560 () | 2147039..2147413 | - | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| CUC52_RS10565 () | 2147557..2147787 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| CUC52_RS10570 () | 2147894..2148550 | + | 657 | WP_060855110.1 | carbon-nitrogen hydrolase family protein | - |
| CUC52_RS10575 () | 2148574..2149236 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| CUC52_RS10580 () | 2149227..2151281 | - | 2055 | WP_196491837.1 | oligopeptidase B | - |
| CUC52_RS10585 () | 2151368..2152027 | - | 660 | WP_060855108.1 | tellurite resistance TerB family protein | - |
| CUC52_RS10590 () | 2152122..2152475 | - | 354 | WP_003034909.1 | protein YebF | - |
| CUC52_RS10595 () | 2152597..2152887 | - | 291 | WP_003034906.1 | DNA damage-inducible protein YebG | - |
| CUC52_RS10600 () | 2153019..2154197 | + | 1179 | WP_060855107.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| CUC52_RS10605 () | 2154265..2154906 | - | 642 | WP_003034901.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| CUC52_RS10610 () | 2154941..2156752 | - | 1812 | WP_003841668.1 | phosphogluconate dehydratase | - |
| CUC52_RS10615 () | 2156986..2158461 | - | 1476 | WP_003034896.1 | glucose-6-phosphate dehydrogenase | - |
| CUC52_RS10625 () | 2158829..2159698 | + | 870 | WP_003034893.1 | MurR/RpiR family transcriptional regulator | - |
| CUC52_RS10630 () | 2159817..2161259 | + | 1443 | WP_003034890.1 | pyruvate kinase | - |
| CUC52_RS10635 () | 2161303..2162274 | - | 972 | WP_003841672.1 | Lipid A biosynthesis myristoyltransferase | VF |
| CUC52_RS10640 () | 2162394..2163713 | - | 1320 | WP_003034883.1 | murein DD-endopeptidase MepM | - |
| CUC52_RS10645 () | 2163729..2164673 | - | 945 | WP_003844151.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| CUC52_RS10650 () | 2164752..2165507 | + | 756 | WP_060855106.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| CUC52_RS10655 () | 2165504..2166289 | + | 786 | WP_060855105.1 | hypothetical protein | VF |
| CUC52_RS10660 () | 2166368..2167378 | - | 1011 | WP_003034872.1 | Holliday junction branch migration DNA helicase RuvB | - |
| CUC52_RS10665 () | 2167387..2167998 | - | 612 | WP_003034869.1 | Holliday junction branch migration protein RuvA | - |
| CUC52_RS10670 () | 2168079..2168600 | - | 522 | WP_003034867.1 | crossover junction endodeoxyribonuclease RuvC | - |
| CUC52_RS10675 () | 2168635..2169378 | - | 744 | WP_003034865.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| CUC52_RS10680 () | 2169407..2169850 | - | 444 | WP_060855104.1 | dihydroneopterin triphosphate diphosphatase | - |
| CUC52_RS10685 () | 2169852..2171624 | - | 1773 | WP_003034862.1 | aspartate--tRNA ligase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|