Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2145542..2145683 | Replicon | chromosome |
| Accession | NZ_CP024672 | ||
| Organism | Citrobacter freundii strain HM38 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2145545..2145648 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2145542..2145683 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CUC52_RS24330 | 2140818..2141030 | + | 213 | WP_153070801.1 | hypothetical protein | - |
| CUC52_RS10530 | 2141092..2141418 | + | 327 | WP_060855149.1 | Rrf2 family transcriptional regulator | - |
| CUC52_RS10535 | 2141560..2144031 | + | 2472 | WP_060855113.1 | exonuclease | - |
| CUC52_RS10540 | 2144095..2144355 | + | 261 | WP_072211989.1 | hypothetical protein | - |
| CUC52_RS10545 | 2144333..2145412 | + | 1080 | WP_016150458.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2145542..2145683 | + | 142 | - | - | Antitoxin |
| - | 2145545..2145648 | - | 104 | - | - | Toxin |
| CUC52_RS10550 | 2145804..2146142 | - | 339 | WP_060855112.1 | YebY family protein | - |
| CUC52_RS10555 | 2146163..2147035 | - | 873 | WP_060855111.1 | copper homeostasis membrane protein CopD | - |
| CUC52_RS10560 | 2147039..2147413 | - | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| CUC52_RS10565 | 2147557..2147787 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| CUC52_RS10570 | 2147894..2148550 | + | 657 | WP_060855110.1 | carbon-nitrogen hydrolase family protein | - |
| CUC52_RS10575 | 2148574..2149236 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2090034..2167378 | 77344 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T88216 NZ_CP024672:c2145648-2145545 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 142 bp
>AT88216 NZ_CP024672:2145542-2145683 [Citrobacter freundii]
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
GATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGG
CATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
