MGE detailed information
MGE type: Conjugative plasmid MGE length: 77062 bp
Accession: NZ_CP024480 Location: 1..77062 Organism: Escherichia coli strain 2011C-4315 Replicon: plasmid unnamed1
Accession: NZ_CP024480 Location: 1..77062 Organism: Escherichia coli strain 2011C-4315 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A5958_RS28430 () | 30..851 | - | 822 | WP_001302199.1 | polysaccharide deacetylase family protein | - |
| A5958_RS28450 () | 3583..3876 | - | 294 | Protein_3 | hypothetical protein | - |
| A5958_RS28460 () | 4175..4390 | - | 216 | Protein_4 | IS3 family transposase IS1203 | Transposase |
| A5958_RS28465 () | 4465..4866 | - | 402 | WP_001222322.1 | GspS family T2SS pilot lipoprotein variant EptO | - |
| A5958_RS28470 () | 4960..5793 | - | 834 | WP_000088802.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| A5958_RS28475 () | 5845..6360 | - | 516 | WP_000998852.1 | Type II secretion system protein M | VF |
| A5958_RS28480 () | 6347..7519 | - | 1173 | WP_001368870.1 | Type II secretion system protein L | VF |
| A5958_RS28485 () | 7558..8535 | - | 978 | WP_000842182.1 | Putative type II secretion system protein K | VF |
| A5958_RS28490 () | 8532..9131 | - | 600 | WP_000082784.1 | Type II secretion system protein J | VF |
| A5958_RS28495 () | 9128..9475 | - | 348 | WP_024173653.1 | Type II secretion system protein I | VF |
| A5958_RS28500 () | 9490..10041 | - | 552 | WP_000082928.1 | type II secretion system minor pseudopilin GspH | - |
| A5958_RS28505 () | 10038..10472 | - | 435 | WP_001231213.1 | Type II secretion system protein G | VF |
| A5958_RS28510 () | 10503..11726 | - | 1224 | WP_001173149.1 | Type II secretion system protein F | VF |
| A5958_RS28515 () | 11728..13230 | - | 1503 | WP_001368867.1 | Type II secretion system protein E | VF |
| A5958_RS28520 () | 13227..15197 | - | 1971 | WP_001368872.1 | Type II secretion system protein D | VF |
| A5958_RS28525 () | 15198..16073 | - | 876 | WP_074399358.1 | Type II secretion system protein C | VF |
| A5958_RS28530 () | 16157..18817 | - | 2661 | WP_000770130.1 | Metalloprotease StcE | VF |
| A5958_RS28535 () | 19450..20663 | + | 1214 | WP_162860176.1 | IS3 family transposase IS629 | Transposase |
| A5958_RS28545 () | 21028..21411 | - | 384 | WP_001151541.1 | relaxosome protein TraM | - |
| A5958_RS28550 () | 21693..22334 | + | 642 | WP_169072575.1 | hypothetical protein | VF |
| A5958_RS28555 () | 22455..23792 | - | 1338 | WP_001368890.1 | IS4 family transposase ISCro3 | Transposase |
| A5958_RS28560 () | 24071..24888 | - | 818 | Protein_23 | DUF932 domain-containing protein | - |
| A5958_RS28565 () | 25007..25204 | - | 198 | WP_045174704.1 | hypothetical protein | - |
| A5958_RS30120 () | 25318..25524 | - | 207 | WP_000275847.1 | hypothetical protein | - |
| A5958_RS28585 () | 26070..26261 | - | 192 | WP_001024839.1 | hypothetical protein | - |
| A5958_RS28590 () | 26258..26680 | - | 423 | WP_000271758.1 | DUF1380 family protein | - |
| A5958_RS28595 () | 26727..27005 | - | 279 | WP_072131700.1 | antirestriction protein | - |
| A5958_RS30125 () | 27545..28321 | - | 777 | WP_001005019.1 | hypothetical protein | - |
| A5958_RS28610 () | 28367..28801 | - | 435 | WP_000274488.1 | DUF1380 family protein | - |
| A5958_RS28615 () | 28813..29034 | - | 222 | WP_001104880.1 | hypothetical protein | - |
| A5958_RS28620 () | 29035..29718 | - | 684 | WP_000085940.1 | DNA methylase | - |
| A5958_RS28625 () | 29795..30100 | - | 306 | WP_032162675.1 | hypothetical protein | - |
| A5958_RS28630 () | 30104..30521 | - | 418 | Protein_34 | DUF1281 domain-containing protein | - |
| A5958_RS28635 () | 30402..31564 | + | 1163 | Protein_35 | DUF4113 domain-containing protein | - |
| A5958_RS28640 () | 31705..32667 | - | 963 | WP_000756329.1 | ParB/RepB/Spo0J family partition protein | - |
| A5958_RS28645 () | 32664..33869 | - | 1206 | WP_000817643.1 | Plasmid partition protein A | VF |
| A5958_RS30010 () | 34240..34413 | + | 174 | WP_001435278.1 | hypothetical protein | - |
| A5958_RS28660 () | 34587..34838 | + | 252 | WP_001132895.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| A5958_RS28665 () | 34835..35122 | + | 288 | WP_001270421.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| A5958_RS28670 () | 35124..35529 | + | 406 | Protein_41 | DDE-type integrase/transposase/recombinase | - |
| A5958_RS28680 () | 36175..37152 | + | 978 | WP_000361617.1 | RepB family plasmid replication initiator protein | - |
| A5958_RS28685 () | 37436..38176 | - | 741 | WP_001066926.1 | IS91 family transposase ISMno23 | Transposase |
| A5958_RS28690 () | 38300..38440 | - | 141 | Protein_44 | serine/threonine protein kinase | - |
| A5958_RS28695 () | 38491..38652 | + | 162 | Protein_45 | epoxyqueuosine reductase QueH | - |
| A5958_RS28700 () | 38963..39337 | - | 375 | WP_001368887.1 | hypothetical protein | - |
| A5958_RS28705 () | 39540..39719 | + | 180 | WP_000526860.1 | hypothetical protein | VF |
| A5958_RS28710 () | 40091..40405 | + | 315 | WP_001435275.1 | hypothetical protein | - |
| A5958_RS28720 () | 40527..40939 | + | 413 | Protein_49 | transposase | - |
| A5958_RS28725 () | 41124..41333 | - | 210 | WP_001302200.1 | hemolysin expression modulator Hha | - |
| A5958_RS28730 () | 41379..41840 | - | 462 | WP_001233850.1 | thermonuclease family protein | - |
| A5958_RS28735 () | 42085..42297 | - | 213 | WP_001302189.1 | ANR family transcriptional regulator | - |
| A5958_RS28740 () | 42430..42990 | - | 561 | WP_000840467.1 | fertility inhibition protein FinO | - |
| A5958_RS28745 () | 43093..43953 | - | 861 | WP_000704522.1 | putative protein YcjY | VF |
| A5958_RS28750 () | 44012..44758 | - | 747 | WP_000205763.1 | conjugal transfer pilus acetylase TraX | - |
| A5958_RS28755 () | 44778..50048 | - | 5271 | WP_000987003.1 | Multifunctional conjugation protein TraI | Relaxase |
| A5958_RS28760 () | 50048..52201 | - | 2154 | WP_001368869.1 | type IV conjugative transfer system coupling protein TraD | - |
| A5958_RS28765 () | 52453..53184 | - | 732 | WP_000850424.1 | complement resistance protein TraT | - |
| A5958_RS28770 () | 53216..53719 | - | 504 | WP_000605510.1 | hypothetical protein | - |
| A5958_RS28775 () | 53734..56555 | - | 2822 | Protein_60 | conjugal transfer mating pair stabilization protein TraG | - |
| A5958_RS28780 () | 56552..57436 | - | 885 | Protein_61 | conjugal transfer protein TraH | - |
| A5958_RS28790 () | 58806..59195 | - | 390 | WP_001172748.1 | cytochrome b562 family protein | - |
| A5958_RS28795 () | 59239..61449 | - | 2211 | WP_000592771.1 | Catalase-peroxidase | VF |
| A5958_RS28815 () | 63271..63786 | + | 516 | WP_000839950.1 | Hemolysin-activating lysine-acyltransferase HlyC | VF |
| A5958_RS28820 () | 63788..66784 | + | 2997 | WP_000217740.1 | Hemolysin, chromosomal | VF |
| A5958_RS28825 () | 66834..68954 | + | 2121 | WP_000987096.1 | Alpha-hemolysin translocation ATP-binding protein HlyB | VF |
| A5958_RS28830 () | 68958..70397 | + | 1440 | WP_001213545.1 | Hemolysin secretion protein D, chromosomal | VF |
| A5958_RS28835 () | 70589..70750 | + | 162 | Protein_70 | lipid II-degrading bacteriocin | - |
| A5958_RS28840 () | 70800..71153 | - | 354 | WP_000864811.1 | colicin M immunity protein | - |
| A5958_RS28845 () | 71405..72618 | + | 1214 | WP_162860177.1 | IS3 family transposase IS629 | Transposase |
| A5958_RS28855 () | 72658..72939 | - | 282 | WP_032211616.1 | transposase | - |
| A5958_RS28860 () | 73103..74101 | - | 999 | WP_077625898.1 | Lipid A biosynthesis myristoyltransferase | VF |
| A5958_RS28865 () | 74175..75896 | - | 1722 | WP_000550558.1 | phosphoethanolamine transferase CptA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|