MGE detailed information
MGE type: Prophage MGE length: 41647 bp
Accession: NZ_CP024473 Location: 3994078..4035724 Organism: Shigella flexneri 7b strain 94-3007 Replicon: chromosome
Accession: NZ_CP024473 Location: 3994078..4035724 Organism: Shigella flexneri 7b strain 94-3007 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPZ98_RS20430 () | 3989502..3991196 | - | 1695 | Protein_3929 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
| CPZ98_RS20435 () | 3991367..3991549 | - | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| CPZ98_RS20440 () | 3991628..3992545 | - | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| CPZ98_RS20445 () | 3992718..3993638 | + | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| CPZ98_RS20450 () | 3993627..3994097 | - | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| CPZ98_RS20455 () | 3994078..3995496 | - | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| CPZ98_RS20460 () | 3995563..3996103 | - | 541 | Protein_3935 | phosphohydrolase | - |
| CPZ98_RS20465 () | 3996143..3996400 | - | 258 | WP_032155863.1 | cell division protein DrpB | - |
| CPZ98_RS20480 () | 3998691..3998801 | - | 111 | Protein_3939 | transposase | - |
| CPZ98_RS20485 () | 3998867..3999631 | + | 765 | Protein_3940 | porin | - |
| CPZ98_RS20495 () | 4000962..4001141 | + | 180 | Protein_3942 | porin | - |
| CPZ98_RS20500 () | 4001769..4002466 | + | 698 | WP_223368647.1 | IS1 family transposase | - |
| CPZ98_RS20505 () | 4002478..4003425 | - | 948 | Protein_3944 | two-component system sensor histidine kinase HprS | - |
| CPZ98_RS20510 () | 4003425..4004096 | - | 672 | WP_001347103.1 | response regulator transcription factor HprR | - |
| CPZ98_RS20515 () | 4004229..4004642 | + | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| CPZ98_RS20520 () | 4004751..4005755 | + | 1005 | Protein_3947 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| CPZ98_RS20525 () | 4005756..4006391 | + | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| CPZ98_RS20530 () | 4006649..4007299 | + | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| CPZ98_RS20540 () | 4008377..4008646 | - | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| CPZ98_RS20545 () | 4008703..4009371 | + | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| CPZ98_RS20550 () | 4009687..4011330 | + | 1644 | WP_011110600.1 | NEL-type E3 ubiquitin ligase domain-containing protein | - |
| CPZ98_RS20560 () | 4011510..4011989 | - | 480 | Protein_3953 | DUF4376 domain-containing protein | - |
| CPZ98_RS20565 () | 4012030..4012887 | - | 858 | Protein_3954 | IS3-like element IS600 family transposase | - |
| CPZ98_RS20570 () | 4012945..4013642 | + | 698 | WP_223368647.1 | IS1 family transposase | - |
| CPZ98_RS20575 () | 4013735..4014217 | - | 483 | WP_000594909.1 | hypothetical protein | - |
| CPZ98_RS20580 () | 4014285..4016234 | - | 1950 | WP_000785377.1 | phage tail tape measure protein | - |
| CPZ98_RS20585 () | 4016319..4016654 | - | 336 | WP_001251340.1 | phage tail assembly protein | - |
| CPZ98_RS20590 () | 4016654..4017010 | - | 357 | WP_001062338.1 | phage tail tube protein | - |
| CPZ98_RS20595 () | 4017010..4018506 | - | 1497 | WP_000155744.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CPZ98_RS20600 () | 4018503..4018664 | - | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| CPZ98_RS20605 () | 4018674..4019033 | - | 360 | Protein_3962 | hypothetical protein | - |
| CPZ98_RS20615 () | 4020280..4020504 | - | 225 | Protein_3964 | hypothetical protein | - |
| CPZ98_RS20620 () | 4020501..4021025 | - | 525 | WP_001076765.1 | hypothetical protein | - |
| CPZ98_RS20625 () | 4020991..4021407 | - | 417 | WP_000702444.1 | phage head closure protein | - |
| CPZ98_RS20630 () | 4021404..4021727 | - | 324 | WP_000924704.1 | head-tail connector protein | - |
| CPZ98_RS20635 () | 4021881..4022693 | - | 813 | Protein_3968 | IS66-like element ISSfl3 family transposase | - |
| CPZ98_RS20640 () | 4022690..4023040 | - | 351 | WP_005049241.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| CPZ98_RS20645 () | 4023037..4023711 | - | 675 | WP_004967157.1 | IS66-like element accessory protein TnpA | - |
| CPZ98_RS20650 () | 4023810..4024025 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| CPZ98_RS20680 () | 4024821..4025509 | - | 689 | Protein_3972 | bacteriophage antitermination protein Q | - |
| CPZ98_RS20685 () | 4025506..4025871 | - | 366 | WP_128832266.1 | RusA family crossover junction endodeoxyribonuclease | - |
| CPZ98_RS20690 () | 4025872..4026930 | - | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| CPZ98_RS20695 () | 4026932..4027210 | - | 279 | WP_011069426.1 | hypothetical protein | - |
| CPZ98_RS20705 () | 4027378..4027533 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 4027545..4027603 | + | 59 | - | - | Antitoxin Detail |
| CPZ98_RS20720 () | 4028185..4028601 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| CPZ98_RS20725 () | 4028628..4028768 | + | 141 | Protein_3978 | DUF4224 domain-containing protein | - |
| CPZ98_RS20730 () | 4028768..4029808 | + | 1041 | WP_005096324.1 | tyrosine-type recombinase/integrase | - |
| CPZ98_RS20740 () | 4030019..4030816 | + | 798 | WP_024260703.1 | DgsA anti-repressor MtfA | - |
| CPZ98_RS20750 () | 4031154..4032416 | + | 1263 | Protein_3981 | tyrosine-type recombinase/integrase | - |
| CPZ98_RS20760 () | 4033765..4034253 | + | 489 | Protein_3983 | MFS transporter | - |
| CPZ98_RS20765 () | 4034318..4035517 | + | 1200 | Protein_3984 | IS3 family transposase | - |
| CPZ98_RS20770 () | 4035518..4035724 | + | 207 | WP_000466572.1 | hypothetical protein | - |
| CPZ98_RS20775 () | 4035826..4037280 | + | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| CPZ98_RS20780 () | 4037623..4038339 | + | 717 | WP_000532920.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| CPZ98_RS20790 () | 4038971..4040598 | - | 1628 | Protein_3988 | toxic metabolite efflux MATE transporter YeeO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|