MGE detailed information
MGE type: Prophage MGE length: 47281 bp
Accession: NZ_CP024473 Location: 3360475..3407755 Organism: Shigella flexneri 7b strain 94-3007 Replicon: chromosome
Accession: NZ_CP024473 Location: 3360475..3407755 Organism: Shigella flexneri 7b strain 94-3007 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPZ98_RS16935 () | 3356312..3357853 | + | 1542 | WP_001306544.1 | transcriptional regulator TyrR | - |
| CPZ98_RS16940 () | 3357897..3358403 | - | 507 | WP_000084387.1 | thiol peroxidase | - |
| CPZ98_RS16945 () | 3358522..3359481 | + | 960 | WP_005062222.1 | L-Ala-D/L-Glu epimerase | - |
| CPZ98_RS16950 () | 3359456..3360184 | - | 729 | WP_005061999.1 | murein tripeptide amidase MpaA | - |
| CPZ98_RS16955 () | 3360475..3361113 | - | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| CPZ98_RS16960 () | 3361131..3362066 | - | 936 | Protein_3264 | alpha/beta hydrolase | - |
| CPZ98_RS16970 () | 3362066..3362986 | - | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| CPZ98_RS16975 () | 3363124..3363558 | + | 435 | Protein_3266 | DNA-binding transcriptional regulator PgrR | - |
| CPZ98_RS16985 () | 3364863..3365273 | + | 411 | Protein_3268 | YdaU family protein | - |
| CPZ98_RS26500 () | 3367039..3367208 | + | 170 | Protein_3270 | hypothetical protein | - |
| CPZ98_RS17000 () | 3367354..3368097 | + | 744 | WP_000788999.1 | ATP-binding protein | - |
| CPZ98_RS17005 () | 3368112..3368534 | + | 423 | WP_001118167.1 | DUF977 family protein | - |
| CPZ98_RS17010 () | 3368592..3368948 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| CPZ98_RS17015 () | 3369041..3369259 | + | 219 | WP_000256998.1 | DUF4014 family protein | - |
| CPZ98_RS17020 () | 3369261..3369626 | + | 366 | WP_001229298.1 | HNH endonuclease signature motif containing protein | - |
| CPZ98_RS17025 () | 3369623..3370288 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| CPZ98_RS17030 () | 3370288..3370653 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - | 3371038..3371096 | - | 59 | - | - | Antitoxin Detail |
| CPZ98_RS17035 () | 3371108..3371263 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| CPZ98_RS17050 () | 3372600..3373199 | + | 600 | WP_000940329.1 | DUF1367 family protein | - |
| CPZ98_RS17055 () | 3373199..3373489 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| CPZ98_RS17060 () | 3373486..3374040 | + | 555 | WP_000640143.1 | DUF1133 family protein | - |
| CPZ98_RS17065 () | 3374193..3374366 | + | 174 | WP_000504450.1 | hypothetical protein | - |
| CPZ98_RS17070 () | 3374428..3375584 | + | 1157 | WP_094081550.1 | IS3-like element IS600 family transposase | - |
| CPZ98_RS17075 () | 3375577..3376137 | + | 561 | WP_072075205.1 | ORF6N domain-containing protein | - |
| CPZ98_RS17110 () | 3378087..3378512 | + | 426 | Protein_3287 | tyrosine-type recombinase/integrase | - |
| CPZ98_RS17115 () | 3379352..3379513 | + | 162 | Protein_3288 | Rha family transcriptional regulator | - |
| CPZ98_RS17120 () | 3379572..3380269 | + | 698 | WP_227804319.1 | IS1 family transposase | - |
| CPZ98_RS17125 () | 3380285..3381190 | + | 906 | Protein_3290 | IS3-like element IS600 family transposase | - |
| CPZ98_RS25995 () | 3381218..3381586 | + | 369 | WP_011069357.1 | hypothetical protein | - |
| CPZ98_RS17140 () | 3381610..3382154 | + | 545 | Protein_3292 | tail fiber assembly protein | - |
| CPZ98_RS17145 () | 3382178..3383367 | + | 1190 | Protein_3293 | prophage tail fiber N-terminal domain-containing protein | - |
| CPZ98_RS17150 () | 3383318..3383941 | + | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| CPZ98_RS17155 () | 3384142..3384999 | - | 858 | WP_000968134.1 | iron/manganese ABC transporter permease subunit SitD | - |
| CPZ98_RS17160 () | 3384996..3385853 | - | 858 | WP_001101728.1 | iron/manganese ABC transporter permease subunit SitC | - |
| CPZ98_RS17165 () | 3385850..3386677 | - | 828 | WP_000983722.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
| CPZ98_RS17170 () | 3386677..3387591 | - | 915 | WP_000555620.1 | iron/manganese ABC transporter substrate-binding protein SitA | - |
| CPZ98_RS17175 () | 3388064..3388705 | - | 642 | Protein_3299 | site-specific integrase | - |
| CPZ98_RS17180 () | 3388759..3389456 | + | 698 | WP_252968685.1 | IS1 family transposase | - |
| CPZ98_RS17185 () | 3389473..3389643 | - | 171 | Protein_3301 | DUF3596 domain-containing protein | - |
| CPZ98_RS17190 () | 3389645..3389812 | - | 168 | WP_005049823.1 | excisionase family protein | - |
| CPZ98_RS17195 () | 3389860..3391069 | - | 1210 | Protein_3303 | IS3 family transposase | - |
| CPZ98_RS17200 () | 3391144..3391383 | - | 240 | WP_000932577.1 | hypothetical protein | - |
| CPZ98_RS17210 () | 3392642..3392950 | - | 309 | WP_232046049.1 | host-nuclease inhibitor Gam family protein | - |
| CPZ98_RS17215 () | 3393049..3394205 | + | 1157 | WP_094190485.1 | IS3-like element IS600 family transposase | - |
| CPZ98_RS17220 () | 3394262..3395677 | - | 1416 | Protein_3308 | exodeoxyribonuclease VIII | - |
| CPZ98_RS17225 () | 3395777..3396052 | - | 276 | WP_005049830.1 | hypothetical protein | - |
| CPZ98_RS17230 () | 3396127..3396297 | - | 171 | WP_001359121.1 | YdaE family protein | - |
| CPZ98_RS17235 () | 3396297..3396518 | - | 222 | WP_000560226.1 | killing protein KilR | - |
| CPZ98_RS17245 () | 3397865..3398753 | - | 889 | Protein_3313 | Rha family transcriptional regulator | - |
| CPZ98_RS17250 () | 3399257..3399466 | + | 210 | WP_128832265.1 | hypothetical protein | - |
| CPZ98_RS26000 () | 3399976..3400356 | + | 381 | Protein_3315 | IS66-like element accessory protein TnpA | - |
| CPZ98_RS26005 () | 3400358..3400525 | + | 168 | Protein_3316 | phage tail protein | - |
| CPZ98_RS17260 () | 3400476..3401099 | + | 624 | WP_039064861.1 | DUF4376 domain-containing protein | - |
| CPZ98_RS17270 () | 3401279..3402985 | - | 1707 | WP_000936830.1 | T3SS effector E3 ubiquitin-protein ligase IpaH3 | - |
| CPZ98_RS17280 () | 3403736..3404182 | + | 447 | Protein_3319 | metallophosphoesterase | - |
| CPZ98_RS17285 () | 3404247..3405403 | + | 1157 | WP_094081550.1 | IS3-like element IS600 family transposase | - |
| CPZ98_RS17290 () | 3405447..3405635 | + | 189 | Protein_3321 | serine/threonine-protein phosphatase | - |
| CPZ98_RS17295 () | 3405660..3405851 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CPZ98_RS17300 () | 3405956..3406192 | - | 237 | WP_001295499.1 | YebV family protein | - |
| CPZ98_RS17305 () | 3406310..3407749 | - | 1440 | WP_000057029.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CPZ98_RS17310 () | 3407829..3410449 | - | 2621 | Protein_3325 | lipid-binding membrane homeostasis protein YebT | - |
| CPZ98_RS17315 () | 3410418..3411701 | - | 1284 | WP_001207281.1 | membrane integrity lipid transport subunit YebS | - |
| CPZ98_RS17320 () | 3411831..3412328 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|