MGE detailed information
MGE type: Genomic_island MGE length: 48058 bp
Accession: NZ_CP024473 Location: 3032880..3080937 Organism: Shigella flexneri 7b strain 94-3007 Replicon: chromosome
Accession: NZ_CP024473 Location: 3032880..3080937 Organism: Shigella flexneri 7b strain 94-3007 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPZ98_RS15120 (3028080) | 3028080..3030404 | - | 2325 | WP_000188248.1 | TonB-dependent Fe(3+) dicitrate receptor FecA | - |
| CPZ98_RS15125 (3030491) | 3030491..3031444 | - | 954 | WP_001068910.1 | ferric citrate uptake sigma factor regulator FecR | - |
| CPZ98_RS15130 (3031441) | 3031441..3031962 | - | 522 | WP_001283626.1 | RNA polymerase sigma factor FecI | - |
| CPZ98_RS26440 (3032099) | 3032099..3032167 | + | 69 | Protein_2913 | protein YkiE | - |
| CPZ98_RS15140 (3032436) | 3032436..3032540 | + | 105 | Protein_2914 | IS3 family transposase | - |
| CPZ98_RS15145 (3032880) | 3032880..3033137 | + | 258 | WP_000555341.1 | biofilm development regulator YmgB/AriR family protein | - |
| CPZ98_RS26445 (3033262) | 3033262..3033392 | - | 131 | Protein_2916 | IS5/IS1182 family transposase | - |
| CPZ98_RS15155 (3033457) | 3033457..3033588 | - | 132 | Protein_2917 | IS3 family transposase | - |
| CPZ98_RS15160 (3033870) | 3033870..3035228 | + | 1359 | WP_000823243.1 | esterase-like activity of phytase family protein | - |
| CPZ98_RS26450 (3035350) | 3035350..3035427 | - | 78 | Protein_2919 | DUF6404 family protein | - |
| CPZ98_RS15165 (3035467) | 3035467..3036852 | - | 1386 | WP_000998091.1 | IS66 family transposase | - |
| CPZ98_RS15170 (3036902) | 3036902..3037249 | - | 348 | WP_000612632.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| CPZ98_RS15175 (3037246) | 3037246..3037626 | - | 381 | WP_001171523.1 | transposase | - |
| CPZ98_RS15185 (3037981) | 3037981..3038415 | - | 435 | WP_001221615.1 | zinc-ribbon domain-containing protein | - |
| CPZ98_RS15190 (3038403) | 3038403..3038804 | - | 402 | WP_000270978.1 | putative zinc ribbon protein | - |
| CPZ98_RS15195 (3039064) | 3039064..3039633 | - | 570 | WP_000221544.1 | inovirus Gp2 family protein | - |
| CPZ98_RS26455 (3039832) | 3039832..3040032 | + | 201 | WP_001297219.1 | hypothetical protein | - |
| CPZ98_RS15205 (3040378) | 3040378..3040521 | - | 144 | Protein_2927 | Hha/YmoA family nucleoid-associated regulatory protein | - |
| CPZ98_RS15225 (3041262) | 3041262..3041468 | + | 207 | WP_000235221.1 | AlpA family transcriptional regulator | - |
| CPZ98_RS15230 (3041563) | 3041563..3042165 | + | 603 | WP_000813445.1 | hypothetical protein | - |
| CPZ98_RS15250 (3043365) | 3043365..3044282 | + | 918 | WP_096971999.1 | hypothetical protein | - |
| CPZ98_RS15255 (3044367) | 3044367..3045239 | + | 873 | WP_005061994.1 | GTPase family protein | - |
| CPZ98_RS15260 (3045457) | 3045457..3047841 | + | 2385 | WP_000544701.1 | dynamin family protein | - |
| CPZ98_RS15265 (3047838) | 3047838..3048743 | + | 906 | WP_000203522.1 | diguanylate cyclase regulator RdcB family protein | - |
| CPZ98_RS15270 (3048740) | 3048740..3049810 | + | 1071 | WP_000021107.1 | patatin-like phospholipase family protein | - |
| CPZ98_RS15275 (3050025) | 3050025..3050722 | + | 698 | WP_103215986.1 | IS1-like element IS1A family transposase | - |
| CPZ98_RS26460 (3050926) | 3050926..3051168 | + | 243 | WP_000348966.1 | DNA polymerase III subunit gamma/tau | - |
| CPZ98_RS15285 (3051288) | 3051288..3051461 | + | 174 | WP_000088744.1 | DUF905 family protein | - |
| CPZ98_RS15290 (3051561) | 3051561..3052382 | + | 822 | WP_001234584.1 | DUF932 domain-containing protein | - |
| CPZ98_RS15300 (3052724) | 3052724..3053197 | + | 474 | WP_005011597.1 | antirestriction protein | - |
| CPZ98_RS15305 (3053213) | 3053213..3053689 | + | 477 | WP_005011624.1 | RadC family protein | - |
| CPZ98_RS15310 (3053752) | 3053752..3053973 | + | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| CPZ98_RS15315 (3054136) | 3054136..3054510 | + | 375 | WP_001280958.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| CPZ98_RS15320 (3054557) | 3054557..3054931 | + | 375 | WP_000854917.1 | TA system toxin CbtA family protein | Toxin Detail |
| CPZ98_RS15325 (3054928) | 3054928..3055419 | + | 492 | WP_130862204.1 | DUF5983 family protein | - |
| CPZ98_RS15330 (3055431) | 3055431..3055628 | + | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| CPZ98_RS15335 (3055713) | 3055713..3056273 | + | 561 | Protein_2946 | DUF4942 domain-containing protein | - |
| CPZ98_RS15340 (3056345) | 3056345..3057349 | + | 1005 | WP_001179707.1 | IS110-like element ISSfl8 family transposase | - |
| CPZ98_RS15345 (3057631) | 3057631..3057912 | + | 282 | Protein_2948 | DUF4942 domain-containing protein | - |
| CPZ98_RS15355 (3058384) | 3058384..3059322 | + | 939 | Protein_2949 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| CPZ98_RS15360 (3059377) | 3059377..3060114 | + | 738 | WP_000283673.1 | zinc-binding phosphatase | - |
| CPZ98_RS15365 (3060138) | 3060138..3060692 | + | 555 | WP_001001917.1 | molecular chaperone YcdY | - |
| CPZ98_RS15370 (3060794) | 3060794..3061285 | + | 492 | WP_001297187.1 | DUF1097 domain-containing protein | - |
| CPZ98_RS15375 (3061349) | 3061349..3062124 | - | 776 | Protein_2953 | CsgG/HfaB family protein | - |
| CPZ98_RS15380 (3062151) | 3062151..3062567 | - | 417 | WP_001264088.1 | curli production assembly/transport protein CsgF | - |
| CPZ98_RS15385 (3062592) | 3062592..3062981 | - | 390 | WP_000833287.1 | curli production assembly/transport protein CsgE | - |
| CPZ98_RS15390 (3062986) | 3062986..3063636 | - | 651 | WP_000481500.1 | biofilm master transcriptional regulator CsgD | - |
| CPZ98_RS15395 (3064389) | 3064389..3064844 | + | 456 | WP_000791650.1 | curli minor subunit CsgB | - |
| CPZ98_RS15400 (3064885) | 3064885..3064992 | + | 108 | Protein_2958 | curlin | - |
| CPZ98_RS15405 (3065058) | 3065058..3066093 | + | 1036 | Protein_2959 | IS3 family transposase | - |
| CPZ98_RS15410 (3066120) | 3066120..3066485 | + | 366 | WP_001144017.1 | curli major subunit CsgA | - |
| CPZ98_RS15415 (3066544) | 3066544..3066678 | + | 135 | Protein_2961 | curli assembly protein CsgC | - |
| CPZ98_RS15420 (3066750) | 3066750..3067918 | + | 1169 | WP_000747032.1 | IS3-like element IS911 family transposase | - |
| CPZ98_RS15425 (3067983) | 3067983..3068516 | + | 534 | WP_000857408.1 | O-acetyl-ADP-ribose deacetylase | - |
| CPZ98_RS15430 (3068458) | 3068458..3069939 | + | 1482 | WP_011069326.1 | cardiolipin synthase ClsC | - |
| CPZ98_RS15435 (3069947) | 3069947..3071104 | - | 1158 | WP_001070350.1 | glucans biosynthesis protein MdoC | - |
| CPZ98_RS15440 (3071498) | 3071498..3073033 | + | 1536 | WP_011069327.1 | glucans biosynthesis protein MdoG | - |
| CPZ98_RS15445 (3073026) | 3073026..3075569 | + | 2544 | WP_001295445.1 | glucans biosynthesis glucosyltransferase MdoH | - |
| CPZ98_RS15450 (3075985) | 3075985..3077172 | - | 1188 | WP_000937567.1 | IS91 family transposase | - |
| CPZ98_RS15455 (3077172) | 3077172..3077537 | - | 366 | WP_000124119.1 | hypothetical protein | - |
| CPZ98_RS26465 (3077622) | 3077622..3078955 | + | 1334 | Protein_2970 | tape measure protein | - |
| CPZ98_RS15470 (3079029) | 3079029..3080197 | + | 1169 | WP_000747032.1 | IS3-like element IS911 family transposase | - |
| CPZ98_RS15475 (3080234) | 3080234..3080716 | - | 483 | Protein_2972 | recombinase family protein | - |
| CPZ98_RS15480 (3080752) | 3080752..3080937 | - | 186 | Protein_2973 | hypothetical protein | - |
| CPZ98_RS15485 (3081109) | 3081109..3082029 | - | 921 | WP_005062003.1 | kdo(2)-lipid IV(A) lauroyltransferase | - |
| CPZ98_RS15490 (3082254) | 3082254..3083306 | + | 1053 | WP_001144616.1 | rhodanese-related sulfurtransferase | - |
| CPZ98_RS15495 (3083348) | 3083348..3083923 | - | 576 | WP_000749269.1 | YceI family protein | - |
| CPZ98_RS15500 (3083927) | 3083927..3084493 | - | 567 | WP_000011108.1 | cytochrome b | - |
| CPZ98_RS15505 (3084754) | 3084754..3084867 | - | 114 | WP_001253418.1 | YceO family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|